RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 CCL22O00626 93 aa-0.8□□□□□ -2.54
SCN1A-205ENST00000473295 SCGB1A1P11684 91 aa-0.8□□□□□ -2.54
SCN1A-205ENST00000473295 ARPC4P59998 168 aa-0.8□□□□□ -2.54
SCN1A-205ENST00000473295 UBE2L3P68036 154 aaKnown RBP-0.8□□□□□ -2.54
SCN1A-205ENST00000473295 SMCO1Q147U7 214 aa-0.8□□□□□ -2.54
SCN1A-205ENST00000473295 KIF21BO75037 1637 aa-0.8□□□□□ -2.54
SCN1A-205ENST00000473295 FAM135AQ9P2D6 1515 aa-0.8□□□□□ -2.54
SCN1A-205ENST00000473295 ATP10BO94823 1461 aa-0.8□□□□□ -2.54
SCN1A-205ENST00000473295 PDE4DIPQ5VU43 2346 aa-0.81□□□□□ -2.54
SCN1A-205ENST00000473295 TLN1Q9Y490 2541 aaKnown RBP-0.81□□□□□ -2.54
SCN1A-205ENST00000473295 PCNTO95613 3336 aa-0.81□□□□□ -2.54
SCN1A-205ENST00000473295 LOC285095A0A1B0GVY8 99 aa-0.81□□□□□ -2.54
SCN1A-205ENST00000473295 IQCF6A8MYZ5 107 aa-0.81□□□□□ -2.54
SCN1A-205ENST00000473295 F6UZH7 168 aa-0.81□□□□□ -2.54
SCN1A-205ENST00000473295 DLEU1O43261 78 aa-0.81□□□□□ -2.54
SCN1A-205ENST00000473295 TRAPPC2P0DI81 140 aa-0.81□□□□□ -2.54
SCN1A-205ENST00000473295 TRAPPC2BP0DI82 140 aa-0.81□□□□□ -2.54
SCN1A-205ENST00000473295 S100A5P33763 92 aa-0.81□□□□□ -2.54
SCN1A-205ENST00000473295 LSM3P62310 102 aaKnown RBP-0.81□□□□□ -2.54
SCN1A-205ENST00000473295 PPP3R2Q96LZ3 170 aa-0.81□□□□□ -2.54
SCN1A-205ENST00000473295 PRO1933Q9H354 126 aa-0.81□□□□□ -2.54
SCN1A-205ENST00000473295 SPANXCQ9NY87 97 aa-0.81□□□□□ -2.54
SCN1A-205ENST00000473295 COPZ2Q9P299 210 aa-0.81□□□□□ -2.54
SCN1A-205ENST00000473295 PRUNE2Q8WUY3 3088 aa-0.81□□□□□ -2.54
SCN1A-205ENST00000473295 RICTORQ6R327 1708 aa-0.81□□□□□ -2.54
SCN1A-205ENST00000473295 EP400Q96L91 3159 aa-0.82□□□□□ -2.54
SCN1A-205ENST00000473295 MUC3AQ02505 3323 aa-0.82□□□□□ -2.54
SCN1A-205ENST00000473295 DMDP11532 3685 aa-0.82□□□□□ -2.54
SCN1A-205ENST00000473295 RGPD8O14715 1765 aaPredicted RBP-0.82□□□□□ -2.54
SCN1A-205ENST00000473295 RGPD5Q99666 1765 aa-0.82□□□□□ -2.54
SCN1A-205ENST00000473295 ARFGEF2Q9Y6D5 1785 aa-0.82□□□□□ -2.54
SCN1A-205ENST00000473295 FREM2Q5SZK8 3169 aa-0.82□□□□□ -2.54
SCN1A-205ENST00000473295 CRYM-AS1A6NIL9 109 aa-0.82□□□□□ -2.54
SCN1A-205ENST00000473295 TSTD3H0UI37 97 aa-0.82□□□□□ -2.54
SCN1A-205ENST00000473295 H3BQF6 201 aa-0.82□□□□□ -2.54
SCN1A-205ENST00000473295 GNGT2O14610 69 aa-0.82□□□□□ -2.54
SCN1A-205ENST00000473295 APOC2P02655 101 aa-0.82□□□□□ -2.54
SCN1A-205ENST00000473295 GNGT1P63211 74 aa-0.82□□□□□ -2.54
SCN1A-205ENST00000473295 SPA17Q15506 151 aa-0.82□□□□□ -2.54
SCN1A-205ENST00000473295 C12orf73Q69YU5 71 aa-0.82□□□□□ -2.54
SCN1A-205ENST00000473295 SERP2Q8N6R1 65 aa-0.82□□□□□ -2.54
SCN1A-205ENST00000473295 C14orf144Q96I85 54 aa-0.82□□□□□ -2.54
SCN1A-205ENST00000473295 GAFA1Q96PS6 74 aa-0.82□□□□□ -2.54
SCN1A-205ENST00000473295 HSPB11Q9Y547 144 aa-0.82□□□□□ -2.54
SCN1A-205ENST00000473295 IER3IP1Q9Y5U9 82 aa-0.82□□□□□ -2.54
SCN1A-205ENST00000473295 LRRC9Q6ZRR7 1453 aa-0.82□□□□□ -2.54
SCN1A-205ENST00000473295 A0A1B0GUL6 1792 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 FRYLO94915 3013 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 NALCNQ8IZF0 1738 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 M0QZ58 72 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 CORTO00230 105 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 LEPROTL1O95214 131 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 DBIP07108 87 aaKnown RBP-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 ACYP1P07311 99 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 COX6CP09669 75 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 C3orf79P0CE67 100 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 AKAIN1P0CW23 69 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 SMIM6P0DI80 62 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 SELENOWP63302 87 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 WHAMMP3Q1A5X7 153 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 NMSQ5H8A3 153 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 NCMAPQ5T1S8 102 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 SMIM15Q7Z3B0 74 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 CROCCP2Q86T23 111 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 C8orf59Q8N0T1 100 aaPredicted RBP-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 SKA2Q8WVK7 121 aaPredicted RBP-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 C12orf57Q99622 126 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 CGREF1Q99674 301 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 CCDC167Q9P0B6 97 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 UQCR10Q9UDW1 63 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 PIK3C2BO00750 1634 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 DIP2AQ14689 1571 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 DNMBPQ6XZF7 1577 aa-0.83□□□□□ -2.54
SCN1A-205ENST00000473295 LRRIQ1Q96JM4 1722 aa-0.84□□□□□ -2.54
SCN1A-205ENST00000473295 ERVK-7P63135 1459 aa-0.84□□□□□ -2.54
SCN1A-205ENST00000473295 ABCC10Q5T3U5 1492 aa-0.84□□□□□ -2.54
SCN1A-205ENST00000473295 RAPGEF2Q9Y4G8 1499 aa-0.84□□□□□ -2.54
SCN1A-205ENST00000473295 CEP290O15078 2479 aa-0.84□□□□□ -2.54
SCN1A-205ENST00000473295 C20orf202A1L168 122 aa-0.84□□□□□ -2.54
SCN1A-205ENST00000473295 D6R8Y8 96 aa-0.84□□□□□ -2.54
SCN1A-205ENST00000473295 NDUFA4O00483 81 aa-0.84□□□□□ -2.54
SCN1A-205ENST00000473295 MUSTN1Q8IVN3 82 aa-0.84□□□□□ -2.54
SCN1A-205ENST00000473295 LEAP2Q969E1 77 aa-0.84□□□□□ -2.54
SCN1A-205ENST00000473295 SNHG12Q9BXW3 62 aa-0.84□□□□□ -2.54
SCN1A-205ENST00000473295 KCNQ1DNQ9H478 68 aa-0.84□□□□□ -2.54
SCN1A-205ENST00000473295 PAIP2BQ9ULR5 123 aaKnown RBP-0.84□□□□□ -2.54
SCN1A-205ENST00000473295 LTN1O94822 1766 aa-0.84□□□□□ -2.54
SCN1A-205ENST00000473295 DCHS1Q96JQ0 3298 aa-0.84□□□□□ -2.54
SCN1A-205ENST00000473295 TCHHQ07283 1943 aa-0.84□□□□□ -2.54
SCN1A-205ENST00000473295 NRKQ7Z2Y5 1582 aa-0.84□□□□□ -2.54
SCN1A-205ENST00000473295 ITSN1Q15811 1721 aa-0.84□□□□□ -2.54
SCN1A-205ENST00000473295 MAGI3Q5TCQ9 1506 aa-0.84□□□□□ -2.54
SCN1A-205ENST00000473295 SPEGQ15772 3267 aa-0.84□□□□□ -2.54
SCN1A-205ENST00000473295 NHSQ6T4R5 1651 aa-0.84□□□□□ -2.54
SCN1A-205ENST00000473295 KIF20BQ96Q89 1820 aa-0.85□□□□□ -2.54
SCN1A-205ENST00000473295 FANCAO15360 1455 aa-0.85□□□□□ -2.55
SCN1A-205ENST00000473295 WDFY4Q6ZS81 3184 aa-0.85□□□□□ -2.55
SCN1A-205ENST00000473295 NAP1L6A6NFF2 107 aa-0.85□□□□□ -2.55
SCN1A-205ENST00000473295 K7EMI3 77 aa-0.85□□□□□ -2.55
SCN1A-205ENST00000473295 SNAPC5O75971 98 aa-0.85□□□□□ -2.55
Retrieved 100 of 20,778 RNA–protein pairs in 103.7 ms