RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 AEBP2Q6ZN18 517 aaPredicted RBP21.1■□□□□ 0.97
SCN1A-205ENST00000473295 CHIC1Q5VXU3 224 aa20.35■□□□□ 0.85
SCN1A-205ENST00000473295 SENP3Q9H4L4 574 aaPredicted RBP18.1■□□□□ 0.49
SCN1A-205ENST00000473295 PHF23Q9BUL5 403 aaPredicted RBP17.83■□□□□ 0.44
SCN1A-205ENST00000473295 FOXD1Q16676 465 aa16.74■□□□□ 0.27
SCN1A-205ENST00000473295 PLPPR3Q6T4P5 718 aa16.43■□□□□ 0.22
SCN1A-205ENST00000473295 PPP6R1Q9UPN7 881 aa15.78■□□□□ 0.12
SCN1A-205ENST00000473295 ADRA2BP18089 450 aa15.77■□□□□ 0.12
SCN1A-205ENST00000473295 PIAS4Q8N2W9 510 aaPredicted RBP15.75■□□□□ 0.11
SCN1A-205ENST00000473295 MSH5O43196 834 aa15.7■□□□□ 0.1
SCN1A-205ENST00000473295 POTEDQ86YR6 584 aa14.82□□□□□ -0.04
SCN1A-205ENST00000473295 SCAF1Q9H7N4 1312 aaKnown RBP14.6□□□□□ -0.07
SCN1A-205ENST00000473295 MAPK8IP2Q13387 824 aaPredicted RBP14.39□□□□□ -0.11
SCN1A-205ENST00000473295 PPP4R3CPQ6ZMV5 832 aa14.38□□□□□ -0.11
SCN1A-205ENST00000473295 DMRT2Q9Y5R5 561 aa14.35□□□□□ -0.11
SCN1A-205ENST00000473295 CNKSR2Q8WXI2 1034 aa14.1□□□□□ -0.15
SCN1A-205ENST00000473295 NCBP3Q53F19 620 aaKnown RBP13.99□□□□□ -0.17
SCN1A-205ENST00000473295 HOXD11P31277 338 aaPredicted RBP13.92□□□□□ -0.18
SCN1A-205ENST00000473295 RNF216Q9NWF9 866 aaPredicted RBP13.91□□□□□ -0.18
SCN1A-205ENST00000473295 DCAF8L1A6NGE4 600 aa13.74□□□□□ -0.21
SCN1A-205ENST00000473295 NPM3O75607 178 aaKnown RBP13.67□□□□□ -0.22
SCN1A-205ENST00000473295 KCNA4P22459 653 aa13.58□□□□□ -0.24
SCN1A-205ENST00000473295 DNAJC5BQ9UF47 199 aa13.48□□□□□ -0.25
SCN1A-205ENST00000473295 RNF39Q9H2S5 420 aa13.35□□□□□ -0.27
SCN1A-205ENST00000473295 CACNB1Q02641 598 aaPredicted RBP13.28□□□□□ -0.28
SCN1A-205ENST00000473295 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.28□□□□□ -0.283e-6■□□□□ 11.3
SCN1A-205ENST00000473295 C1QBPQ07021 282 aaKnown RBP13.22□□□□□ -0.29
SCN1A-205ENST00000473295 U3KPZ7 1027 aaPredicted RBP12.97□□□□□ -0.33
SCN1A-205ENST00000473295 SLC4A2P04920 1241 aa12.96□□□□□ -0.33
SCN1A-205ENST00000473295 SLC4A1APQ9BWU0 796 aaKnown RBP12.93□□□□□ -0.34
SCN1A-205ENST00000473295 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.83□□□□□ -0.36
SCN1A-205ENST00000473295 HNRNPUL2Q1KMD3 747 aaKnown RBP12.83□□□□□ -0.36
SCN1A-205ENST00000473295 APLP2Q06481 763 aa12.82□□□□□ -0.36
SCN1A-205ENST00000473295 SAMD1Q6SPF0 538 aaPredicted RBP12.73□□□□□ -0.37
SCN1A-205ENST00000473295 CAPN15O75808 1086 aa12.72□□□□□ -0.37
SCN1A-205ENST00000473295 MYCNP04198 464 aaPredicted RBP12.72□□□□□ -0.37
SCN1A-205ENST00000473295 SPINK5Q9NQ38 1064 aaPredicted RBP12.69□□□□□ -0.38
SCN1A-205ENST00000473295 FOXD4L1Q9NU39 408 aa12.69□□□□□ -0.38
SCN1A-205ENST00000473295 ZNF219Q9P2Y4 722 aaPredicted RBP12.63□□□□□ -0.39
SCN1A-205ENST00000473295 DSG3P32926 999 aa12.57□□□□□ -0.4
SCN1A-205ENST00000473295 TRHP20396 242 aaPredicted RBP12.56□□□□□ -0.4
SCN1A-205ENST00000473295 ZBTB22O15209 634 aa12.45□□□□□ -0.42
SCN1A-205ENST00000473295 ABCB7O75027 752 aa12.4□□□□□ -0.42
SCN1A-205ENST00000473295 ATXN8OSP0DMR3 200 aa12.33□□□□□ -0.44
SCN1A-205ENST00000473295 ATF5Q9Y2D1 282 aaPredicted RBP12.27□□□□□ -0.45
SCN1A-205ENST00000473295 POLA2Q14181 598 aa12.26□□□□□ -0.45
SCN1A-205ENST00000473295 ZBTB12Q9Y330 459 aaPredicted RBP12.16□□□□□ -0.46
SCN1A-205ENST00000473295 CSRNP3Q8WYN3 585 aa12.13□□□□□ -0.47
SCN1A-205ENST00000473295 EHMT2Q96KQ7 1210 aa12.1□□□□□ -0.47
SCN1A-205ENST00000473295 RBM42Q9BTD8 480 aaKnown RBP12.1□□□□□ -0.47
SCN1A-205ENST00000473295 FBLN2P98095 1184 aa11.93□□□□□ -0.5
SCN1A-205ENST00000473295 OSCARQ8IYS5 282 aa11.86□□□□□ -0.51
SCN1A-205ENST00000473295 AKT1S1Q96B36 256 aa11.83□□□□□ -0.52
SCN1A-205ENST00000473295 SPDYE2BA6NHP3 402 aa11.76□□□□□ -0.53
SCN1A-205ENST00000473295 SPDYE6P0CI01 402 aa11.76□□□□□ -0.53
SCN1A-205ENST00000473295 SPDYE2Q495Y8 402 aa11.76□□□□□ -0.53
SCN1A-205ENST00000473295 MKRN4PQ13434 485 aaPredicted RBP11.73□□□□□ -0.53
SCN1A-205ENST00000473295 POTEHQ6S545 545 aa11.69□□□□□ -0.54
SCN1A-205ENST00000473295 REM2Q8IYK8 340 aaPredicted RBP11.66□□□□□ -0.54
SCN1A-205ENST00000473295 CHRDL2Q6WN34 429 aa11.65□□□□□ -0.54
SCN1A-205ENST00000473295 ZNF692Q9BU19 519 aaPredicted RBP11.62□□□□□ -0.55
SCN1A-205ENST00000473295 SSUH2Q9Y2M2 353 aa11.58□□□□□ -0.56
SCN1A-205ENST00000473295 PITPNM1O00562 1244 aa11.52□□□□□ -0.57
SCN1A-205ENST00000473295 SPDYE1Q8NFV5 336 aaPredicted RBP11.5□□□□□ -0.57
SCN1A-205ENST00000473295 PABPN1Q86U42 306 aaKnown RBP eCLIP11.43□□□□□ -0.58
SCN1A-205ENST00000473295 CLEC11AQ9Y240 323 aa11.42□□□□□ -0.58
SCN1A-205ENST00000473295 FXR2P51116 673 aaKnown RBP eCLIP11.4□□□□□ -0.58
SCN1A-205ENST00000473295 PIP4P2Q8N4L2 257 aa11.4□□□□□ -0.58
SCN1A-205ENST00000473295 SPDYE4A6NLX3 237 aa11.37□□□□□ -0.59
SCN1A-205ENST00000473295 PRR29P0C7W0 189 aa11.29□□□□□ -0.6
SCN1A-205ENST00000473295 STAG3Q9UJ98 1225 aa11.28□□□□□ -0.6
SCN1A-205ENST00000473295 PRKAR2AP13861 404 aaKnown RBP11.24□□□□□ -0.61
SCN1A-205ENST00000473295 HAX1O00165 279 aa11.16□□□□□ -0.62
SCN1A-205ENST00000473295 PROM2Q8N271 834 aa11.13□□□□□ -0.63
SCN1A-205ENST00000473295 CHADLQ6NUI6 762 aa11.12□□□□□ -0.63
SCN1A-205ENST00000473295 SP7Q8TDD2 431 aaPredicted RBP11.08□□□□□ -0.64
SCN1A-205ENST00000473295 FKBP8Q14318 412 aa11.03□□□□□ -0.64
SCN1A-205ENST00000473295 FARP1Q9Y4F1 1045 aaPredicted RBP11.03□□□□□ -0.64
SCN1A-205ENST00000473295 C19orf67A6NJJ6 358 aa11.02□□□□□ -0.65
SCN1A-205ENST00000473295 CREBZFQ9NS37 354 aa11.01□□□□□ -0.65
SCN1A-205ENST00000473295 PLEKHG5O94827 1062 aa10.92□□□□□ -0.66
SCN1A-205ENST00000473295 NPM1P06748 294 aaKnown RBP eCLIP10.92□□□□□ -0.66
SCN1A-205ENST00000473295 CD44P16070 742 aaKnown RBP10.92□□□□□ -0.66
SCN1A-205ENST00000473295 EVX2Q03828 476 aa10.92□□□□□ -0.66
SCN1A-205ENST00000473295 CLCN6P51797 869 aa10.86□□□□□ -0.67
SCN1A-205ENST00000473295 PAK3O75914 559 aaPredicted RBP10.85□□□□□ -0.67
SCN1A-205ENST00000473295 FBXO3Q9UK99 471 aa10.84□□□□□ -0.67
SCN1A-205ENST00000473295 MNX1P50219 401 aaPredicted RBP10.83□□□□□ -0.68
SCN1A-205ENST00000473295 MIER1Q8N108 512 aa10.83□□□□□ -0.68
SCN1A-205ENST00000473295 PLCD3Q8N3E9 789 aa10.8□□□□□ -0.68
SCN1A-205ENST00000473295 ZBTB47Q9UFB7 747 aaPredicted RBP10.79□□□□□ -0.68
SCN1A-205ENST00000473295 ZRANB1Q9UGI0 708 aa10.79□□□□□ -0.68
SCN1A-205ENST00000473295 GABBR2O75899 941 aa10.78□□□□□ -0.68
SCN1A-205ENST00000473295 ZNF579Q8NAF0 562 aaKnown RBP10.77□□□□□ -0.69
SCN1A-205ENST00000473295 TSPYL2Q9H2G4 693 aaPredicted RBP10.64□□□□□ -0.71
SCN1A-205ENST00000473295 VASPP50552 380 aaPredicted RBP10.61□□□□□ -0.71
SCN1A-205ENST00000473295 PHF12Q96QT6 1004 aa10.61□□□□□ -0.71
SCN1A-205ENST00000473295 DCBLD2Q96PD2 775 aa10.6□□□□□ -0.71
SCN1A-205ENST00000473295 RASEFQ8IZ41 740 aa10.58□□□□□ -0.72
SCN1A-205ENST00000473295 CCDC61Q9Y6R9 512 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 122.4 ms