RNA–Protein interactions for RNA: ENST00000427191.6

PTPN13-203, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,487 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-203ENST00000427191 RPL37P61927 97 aaKnown RBP8.96□□□□□ -0.98
PTPN13-203ENST00000427191 PLAC8Q9NZF1 115 aa8.95□□□□□ -0.98
PTPN13-203ENST00000427191 CASC10Q5T4H9 136 aa8.95□□□□□ -0.98
PTPN13-203ENST00000427191 SPRR1AP35321 89 aa8.94□□□□□ -0.98
PTPN13-203ENST00000427191 STAB1Q9NY15 2570 aa8.94□□□□□ -0.98
PTPN13-203ENST00000427191 Q5W150 140 aa8.94□□□□□ -0.98
PTPN13-203ENST00000427191 SPRR1BP22528 89 aa8.93□□□□□ -0.98
PTPN13-203ENST00000427191 FLNBO75369 2602 aaKnown RBP8.93□□□□□ -0.98
PTPN13-203ENST00000427191 FP248Q71RG6 208 aaPredicted RBP8.93□□□□□ -0.98
PTPN13-203ENST00000427191 SEC61BP60468 96 aaKnown RBP8.92□□□□□ -0.98
PTPN13-203ENST00000427191 ITPR3Q14573 2671 aa8.91□□□□□ -0.98
PTPN13-203ENST00000427191 AKAP13Q12802 2813 aa8.9□□□□□ -0.98
PTPN13-203ENST00000427191 LINC00472Q9H8W2 130 aa8.9□□□□□ -0.98
PTPN13-203ENST00000427191 CFAP46Q8IYW2 2715 aa8.89□□□□□ -0.99
PTPN13-203ENST00000427191 DMBT1Q9UGM3 2413 aaPredicted RBP8.89□□□□□ -0.99
PTPN13-203ENST00000427191 CENPEQ02224 2701 aa8.87□□□□□ -0.99
PTPN13-203ENST00000427191 A0A0C4DFX4 3053 aa8.87□□□□□ -0.99
PTPN13-203ENST00000427191 CFAP54Q96N23 3096 aa8.86□□□□□ -0.99
PTPN13-203ENST00000427191 LAMA2P24043 3122 aaKnown RBP8.85□□□□□ -0.99
PTPN13-203ENST00000427191 PRAC1Q96KF2 57 aa8.85□□□□□ -0.99
PTPN13-203ENST00000427191 H1FX-AS1Q4G0G2 97 aa8.83□□□□□ -1
PTPN13-203ENST00000427191 BRCA2P51587 3418 aa8.82□□□□□ -1
PTPN13-203ENST00000427191 HELZ2Q9BYK8 2649 aaKnown RBP8.81□□□□□ -1
PTPN13-203ENST00000427191 CELSR3Q9NYQ7 3312 aa8.79□□□□□ -1
PTPN13-203ENST00000427191 Q6ZR54 194 aa8.79□□□□□ -1
PTPN13-203ENST00000427191 KRTAP1-3Q8IUG1 177 aa8.77□□□□□ -1.01
PTPN13-203ENST00000427191 PLAC4Q8WY50 150 aa8.75□□□□□ -1.01
PTPN13-203ENST00000427191 KRTAP16-1A8MUX0 517 aa8.73□□□□□ -1.01
PTPN13-203ENST00000427191 M0QZ58 72 aa8.73□□□□□ -1.01
PTPN13-203ENST00000427191 REV3LO60673 3130 aa8.7□□□□□ -1.02
PTPN13-203ENST00000427191 RANBP2P49792 3224 aaKnown RBP8.69□□□□□ -1.02
PTPN13-203ENST00000427191 KRTAP1-1Q07627 177 aa8.68□□□□□ -1.02
PTPN13-203ENST00000427191 KRTAP26-1Q6PEX3 210 aa8.68□□□□□ -1.02
PTPN13-203ENST00000427191 CYSTM1Q9H1C7 97 aa8.67□□□□□ -1.02
PTPN13-203ENST00000427191 KMT2BQ9UMN6 2715 aaPredicted RBP8.65□□□□□ -1.02
PTPN13-203ENST00000427191 CHD6Q8TD26 2715 aa8.64□□□□□ -1.03
PTPN13-203ENST00000427191 TRIOO75962 3097 aa8.64□□□□□ -1.03
PTPN13-203ENST00000427191 SPATA8Q6RVD6 105 aa8.64□□□□□ -1.03
PTPN13-203ENST00000427191 CDH23Q9H251 3354 aa8.63□□□□□ -1.03
PTPN13-203ENST00000427191 SZT2Q5T011 3432 aa8.63□□□□□ -1.03
PTPN13-203ENST00000427191 PANO1I0J062 215 aa8.63□□□□□ -1.03
PTPN13-203ENST00000427191 NOTCH1P46531 2555 aa8.63□□□□□ -1.03
PTPN13-203ENST00000427191 UNC79Q9P2D8 2635 aa8.62□□□□□ -1.03
PTPN13-203ENST00000427191 LAMA3Q16787 3333 aa8.62□□□□□ -1.03
PTPN13-203ENST00000427191 GCN1Q92616 2671 aaKnown RBP8.61□□□□□ -1.03
PTPN13-203ENST00000427191 OXTP01178 125 aa8.6□□□□□ -1.03
PTPN13-203ENST00000427191 STAB2Q8WWQ8 2551 aa8.6□□□□□ -1.03
PTPN13-203ENST00000427191 ADM2Q7Z4H4 148 aa8.58□□□□□ -1.04
PTPN13-203ENST00000427191 RPS29P62273 56 aaKnown RBP8.58□□□□□ -1.04
PTPN13-203ENST00000427191 TEX15Q9BXT5 2789 aa8.58□□□□□ -1.04
PTPN13-203ENST00000427191 Q8NDZ9 215 aa8.57□□□□□ -1.04
PTPN13-203ENST00000427191 A0A087X002 238 aa8.56□□□□□ -1.04
PTPN13-203ENST00000427191 Q5VSD8 79 aa8.54□□□□□ -1.04
PTPN13-203ENST00000427191 VPS13AQ96RL7 3174 aa8.54□□□□□ -1.04
PTPN13-203ENST00000427191 KRTAP25-1Q3LHN0 102 aa8.53□□□□□ -1.04
PTPN13-203ENST00000427191 KRTAP29-1A8MX34 341 aaPredicted RBP8.52□□□□□ -1.05
PTPN13-203ENST00000427191 CHD7Q9P2D1 2997 aa8.51□□□□□ -1.05
PTPN13-203ENST00000427191 COL6A5A8TX70 2615 aa8.49□□□□□ -1.05
PTPN13-203ENST00000427191 FREM2Q5SZK8 3169 aa8.48□□□□□ -1.05
PTPN13-203ENST00000427191 KRTAP4-16G5E9R7 235 aaPredicted RBP8.47□□□□□ -1.05
PTPN13-203ENST00000427191 LCE6AA0A183 80 aa8.45□□□□□ -1.06
PTPN13-203ENST00000427191 A6NN06 94 aa8.45□□□□□ -1.06
PTPN13-203ENST00000427191 TEP1Q99973 2627 aaKnown RBP8.44□□□□□ -1.06
PTPN13-203ENST00000427191 PRUNE2Q8WUY3 3088 aa8.42□□□□□ -1.06
PTPN13-203ENST00000427191 C20orf166-AS1Q96NR2 134 aa8.41□□□□□ -1.06
PTPN13-203ENST00000427191 USP34Q70CQ2 3546 aa8.4□□□□□ -1.07
PTPN13-203ENST00000427191 UNC80Q8N2C7 3258 aa8.37□□□□□ -1.07
PTPN13-203ENST00000427191 KRTAP1-5Q9BYS1 174 aa8.36□□□□□ -1.07
PTPN13-203ENST00000427191 COL6A3P12111 3177 aa8.36□□□□□ -1.07
PTPN13-203ENST00000427191 SPTBN5Q9NRC6 3674 aaKnown RBP8.36□□□□□ -1.07
PTPN13-203ENST00000427191 KRTAP10-1P60331 282 aa8.35□□□□□ -1.07
PTPN13-203ENST00000427191 VCANP13611 3396 aa8.34□□□□□ -1.07
PTPN13-203ENST00000427191 A8MUU9 505 aa8.34□□□□□ -1.07
PTPN13-203ENST00000427191 LAMA1P25391 3075 aa8.32□□□□□ -1.08
PTPN13-203ENST00000427191 ITPR2Q14571 2701 aa8.31□□□□□ -1.08
PTPN13-203ENST00000427191 PP632Q6XCG6 107 aa8.3□□□□□ -1.08
PTPN13-203ENST00000427191 HTTP42858 3142 aa8.28□□□□□ -1.08
PTPN13-203ENST00000427191 TNP1P09430 55 aa8.28□□□□□ -1.08
PTPN13-203ENST00000427191 NSD1Q96L73 2696 aaPredicted RBP8.27□□□□□ -1.09
PTPN13-203ENST00000427191 MYO15AQ9UKN7 3530 aa8.27□□□□□ -1.09
PTPN13-203ENST00000427191 WDFY3Q8IZQ1 3526 aa8.27□□□□□ -1.09
PTPN13-203ENST00000427191 NDUFAF8A1L188 74 aa8.25□□□□□ -1.09
PTPN13-203ENST00000427191 KRTAP10-2P60368 255 aa8.25□□□□□ -1.09
PTPN13-203ENST00000427191 FRYQ5TBA9 3013 aa8.23□□□□□ -1.09
PTPN13-203ENST00000427191 ZNF292O60281 2723 aa8.23□□□□□ -1.09
PTPN13-203ENST00000427191 NOTCH2NLQ7Z3S9 236 aa8.23□□□□□ -1.09
PTPN13-203ENST00000427191 MGAQ8IWI9 3026 aa8.22□□□□□ -1.09
PTPN13-203ENST00000427191 SETXQ7Z333 2677 aaKnown RBP8.22□□□□□ -1.09
PTPN13-203ENST00000427191 WDFY4Q6ZS81 3184 aa8.18□□□□□ -1.1
PTPN13-203ENST00000427191 BAHCC1Q9P281 2608 aa8.16□□□□□ -1.1
PTPN13-203ENST00000427191 APCP25054 2843 aa8.16□□□□□ -1.1
PTPN13-203ENST00000427191 KALRNO60229 2985 aa8.14□□□□□ -1.11
PTPN13-203ENST00000427191 LRBAP50851 2863 aa8.14□□□□□ -1.11
PTPN13-203ENST00000427191 TRANK1O15050 2925 aa8.14□□□□□ -1.11
PTPN13-203ENST00000427191 A8MU10 97 aa8.13□□□□□ -1.11
PTPN13-203ENST00000427191 SPEGQ15772 3267 aa8.13□□□□□ -1.11
PTPN13-203ENST00000427191 IGSF10Q6WRI0 2623 aa8.12□□□□□ -1.11
PTPN13-203ENST00000427191 KRTAP11-1Q8IUC1 163 aa8.11□□□□□ -1.11
PTPN13-203ENST00000427191 NBEAL2Q6ZNJ1 2754 aa8.1□□□□□ -1.11
PTPN13-203ENST00000427191 C10orf95Q9H7T3 257 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms