RNA–Protein interactions for RNA: ENST00000370544.9

LMO4-202, Transcript of LIM domain only 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMO4, Length 5,405 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4-202ENST00000370544 MKI67P46013 3256 aaKnown RBP11.89□□□□□ -0.51
LMO4-202ENST00000370544 A0A1B0GU33 70 aa11.88□□□□□ -0.51
LMO4-202ENST00000370544 Q5W150 140 aa11.86□□□□□ -0.51
LMO4-202ENST00000370544 KRTAP10-1P60331 282 aa11.83□□□□□ -0.52
LMO4-202ENST00000370544 Q75L30 129 aa11.83□□□□□ -0.52
LMO4-202ENST00000370544 CFAP54Q96N23 3096 aa11.83□□□□□ -0.52
LMO4-202ENST00000370544 KRTAP10-2P60368 255 aa11.82□□□□□ -0.52
LMO4-202ENST00000370544 LINC01558Q9Y6Z2 57 aa11.79□□□□□ -0.52
LMO4-202ENST00000370544 LCE6AA0A183 80 aa11.79□□□□□ -0.52
LMO4-202ENST00000370544 CYSTM1Q9H1C7 97 aa11.79□□□□□ -0.52
LMO4-202ENST00000370544 S4R3F8 94 aa11.78□□□□□ -0.52
LMO4-202ENST00000370544 Q5VSD8 79 aa11.78□□□□□ -0.52
LMO4-202ENST00000370544 AKAP13Q12802 2813 aa11.77□□□□□ -0.53
LMO4-202ENST00000370544 LINC00483Q53H64 154 aa11.76□□□□□ -0.53
LMO4-202ENST00000370544 CHD6Q8TD26 2715 aa11.76□□□□□ -0.53
LMO4-202ENST00000370544 M0R2T5 61 aa11.76□□□□□ -0.53
LMO4-202ENST00000370544 CSAG1Q6PB30 78 aa11.75□□□□□ -0.53
LMO4-202ENST00000370544 CAMK2N1Q7Z7J9 78 aa11.75□□□□□ -0.53
LMO4-202ENST00000370544 SPINK7P58062 85 aa11.74□□□□□ -0.53
LMO4-202ENST00000370544 TEX15Q9BXT5 2789 aa11.73□□□□□ -0.53
LMO4-202ENST00000370544 BRCA2P51587 3418 aa11.73□□□□□ -0.53
LMO4-202ENST00000370544 TEP1Q99973 2627 aaKnown RBP11.7□□□□□ -0.54
LMO4-202ENST00000370544 KRTAP4-16G5E9R7 235 aaPredicted RBP11.7□□□□□ -0.54
LMO4-202ENST00000370544 PANO1I0J062 215 aa11.7□□□□□ -0.54
LMO4-202ENST00000370544 Q5XG85 94 aa11.67□□□□□ -0.54
LMO4-202ENST00000370544 DMAC1Q96GE9 116 aa11.66□□□□□ -0.54
LMO4-202ENST00000370544 STAB1Q9NY15 2570 aa11.66□□□□□ -0.54
LMO4-202ENST00000370544 WDFY4Q6ZS81 3184 aa11.66□□□□□ -0.54
LMO4-202ENST00000370544 FP248Q71RG6 208 aaPredicted RBP11.66□□□□□ -0.54
LMO4-202ENST00000370544 Q6ZR54 194 aa11.65□□□□□ -0.54
LMO4-202ENST00000370544 A0A0C4DFX4 3053 aa11.65□□□□□ -0.54
LMO4-202ENST00000370544 UNC79Q9P2D8 2635 aa11.63□□□□□ -0.55
LMO4-202ENST00000370544 SEC61BP60468 96 aaKnown RBP11.62□□□□□ -0.55
LMO4-202ENST00000370544 GCN1Q92616 2671 aaKnown RBP11.61□□□□□ -0.55
LMO4-202ENST00000370544 COL6A5A8TX70 2615 aa11.61□□□□□ -0.55
LMO4-202ENST00000370544 IGSF10Q6WRI0 2623 aa11.61□□□□□ -0.55
LMO4-202ENST00000370544 LAMA2P24043 3122 aaKnown RBP11.61□□□□□ -0.55
LMO4-202ENST00000370544 Q5VV11 94 aa11.59□□□□□ -0.55
LMO4-202ENST00000370544 DSPP15924 2871 aaKnown RBP11.58□□□□□ -0.56
LMO4-202ENST00000370544 PRUNE2Q8WUY3 3088 aa11.57□□□□□ -0.56
LMO4-202ENST00000370544 NBEAL1Q6ZS30 2694 aa11.52□□□□□ -0.56
LMO4-202ENST00000370544 LUZP6Q538Z0 58 aa11.52□□□□□ -0.56
LMO4-202ENST00000370544 TRIOO75962 3097 aa11.51□□□□□ -0.57
LMO4-202ENST00000370544 A0A087X002 238 aa11.51□□□□□ -0.57
LMO4-202ENST00000370544 UNC80Q8N2C7 3258 aa11.51□□□□□ -0.57
LMO4-202ENST00000370544 R4GN34 69 aa11.5□□□□□ -0.57
LMO4-202ENST00000370544 KRTAP29-1A8MX34 341 aaPredicted RBP11.49□□□□□ -0.57
LMO4-202ENST00000370544 NOTCH1P46531 2555 aa11.47□□□□□ -0.57
LMO4-202ENST00000370544 SETXQ7Z333 2677 aaKnown RBP11.47□□□□□ -0.57
LMO4-202ENST00000370544 XIRP2A4UGR9 3374 aa11.44□□□□□ -0.58
LMO4-202ENST00000370544 Q6ZRN7 208 aaPredicted RBP11.43□□□□□ -0.58
LMO4-202ENST00000370544 KRTAP11-1Q8IUC1 163 aa11.43□□□□□ -0.58
LMO4-202ENST00000370544 PRAC1Q96KF2 57 aa11.42□□□□□ -0.58
LMO4-202ENST00000370544 OXTP01178 125 aa11.4□□□□□ -0.58
LMO4-202ENST00000370544 NBEAL2Q6ZNJ1 2754 aa11.39□□□□□ -0.59
LMO4-202ENST00000370544 CDH23Q9H251 3354 aa11.39□□□□□ -0.59
LMO4-202ENST00000370544 BAHCC1Q9P281 2608 aa11.37□□□□□ -0.59
LMO4-202ENST00000370544 H1FX-AS1Q4G0G2 97 aa11.35□□□□□ -0.59
LMO4-202ENST00000370544 KRTAP7-1Q8IUC3 87 aa11.35□□□□□ -0.59
LMO4-202ENST00000370544 NOTCH2NLQ7Z3S9 236 aa11.35□□□□□ -0.59
LMO4-202ENST00000370544 RPL37P61927 97 aaKnown RBP11.34□□□□□ -0.59
LMO4-202ENST00000370544 VPS13AQ96RL7 3174 aa11.34□□□□□ -0.59
LMO4-202ENST00000370544 FRYQ5TBA9 3013 aa11.34□□□□□ -0.59
LMO4-202ENST00000370544 MAP1AP78559 2803 aaPredicted RBP11.33□□□□□ -0.6
LMO4-202ENST00000370544 UBR5O95071 2799 aaPredicted RBP11.33□□□□□ -0.6
LMO4-202ENST00000370544 M0QZ58 72 aa11.31□□□□□ -0.6
LMO4-202ENST00000370544 ASB16-AS1Q495Z4 193 aa11.31□□□□□ -0.6
LMO4-202ENST00000370544 RPS29P62273 56 aaKnown RBP11.27□□□□□ -0.61
LMO4-202ENST00000370544 ROMO1P60602 79 aa11.24□□□□□ -0.61
LMO4-202ENST00000370544 ADM2Q7Z4H4 148 aa11.24□□□□□ -0.61
LMO4-202ENST00000370544 ITPR2Q14571 2701 aa11.23□□□□□ -0.61
LMO4-202ENST00000370544 KRTAP13-1Q8IUC0 172 aa11.2□□□□□ -0.62
LMO4-202ENST00000370544 SPATA8Q6RVD6 105 aa11.19□□□□□ -0.62
LMO4-202ENST00000370544 KRTAP13-2Q52LG2 175 aa11.18□□□□□ -0.62
LMO4-202ENST00000370544 NSD1Q96L73 2696 aaPredicted RBP11.18□□□□□ -0.62
LMO4-202ENST00000370544 ITPR1Q14643 2758 aa11.18□□□□□ -0.62
LMO4-202ENST00000370544 CELSR3Q9NYQ7 3312 aa11.14□□□□□ -0.63
LMO4-202ENST00000370544 SZT2Q5T011 3432 aa11.13□□□□□ -0.63
LMO4-202ENST00000370544 FLNCQ14315 2725 aa11.08□□□□□ -0.64
LMO4-202ENST00000370544 ATMQ13315 3056 aa11.08□□□□□ -0.64
LMO4-202ENST00000370544 PLAC4Q8WY50 150 aa11.07□□□□□ -0.64
LMO4-202ENST00000370544 DMBT1Q9UGM3 2413 aaPredicted RBP11.06□□□□□ -0.64
LMO4-202ENST00000370544 STAB2Q8WWQ8 2551 aa11.05□□□□□ -0.64
LMO4-202ENST00000370544 KALRNO60229 2985 aa11.05□□□□□ -0.64
LMO4-202ENST00000370544 KRTAP21-3Q3LHN1 58 aa11.03□□□□□ -0.64
LMO4-202ENST00000370544 LAMA1P25391 3075 aa11.02□□□□□ -0.64
LMO4-202ENST00000370544 FLG2Q5D862 2391 aaPredicted RBP11.02□□□□□ -0.64
LMO4-202ENST00000370544 VCANP13611 3396 aa11.02□□□□□ -0.65
LMO4-202ENST00000370544 KMT2BQ9UMN6 2715 aaPredicted RBP11.01□□□□□ -0.65
LMO4-202ENST00000370544 TACC2O95359 2948 aa10.98□□□□□ -0.65
LMO4-202ENST00000370544 COL12A1Q99715 3063 aa10.98□□□□□ -0.65
LMO4-202ENST00000370544 DNAH14Q0VDD8 3507 aa10.97□□□□□ -0.65
LMO4-202ENST00000370544 LRBAP50851 2863 aa10.94□□□□□ -0.66
LMO4-202ENST00000370544 UTP20O75691 2785 aaKnown RBP10.94□□□□□ -0.66
LMO4-202ENST00000370544 FREM2Q5SZK8 3169 aa10.93□□□□□ -0.66
LMO4-202ENST00000370544 FRYLO94915 3013 aa10.93□□□□□ -0.66
LMO4-202ENST00000370544 HIVEP1P15822 2718 aa10.92□□□□□ -0.66
LMO4-202ENST00000370544 H3BS24 57 aa10.91□□□□□ -0.66
LMO4-202ENST00000370544 A8MUU9 505 aa10.9□□□□□ -0.66
LMO4-202ENST00000370544 ADGRG4Q8IZF6 3080 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms