RNA–Protein interactions for RNA: ENST00000344722.5

SMC4-201, Transcript of structural maintenance of chromosomes 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC4, Length 5,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-201ENST00000344722 SMR3BP02814 79 aaPredicted RBP10.81□□□□□ -0.68
SMC4-201ENST00000344722 ROMO1P60602 79 aa10.81□□□□□ -0.68
SMC4-201ENST00000344722 CHD9Q3L8U1 2897 aa10.79□□□□□ -0.68
SMC4-201ENST00000344722 FASNP49327 2511 aaKnown RBP10.79□□□□□ -0.68
SMC4-201ENST00000344722 H1FX-AS1Q4G0G2 97 aa10.76□□□□□ -0.69
SMC4-201ENST00000344722 RPL37P61927 97 aaKnown RBP10.74□□□□□ -0.69
SMC4-201ENST00000344722 COX6B2Q6YFQ2 88 aa10.71□□□□□ -0.69
SMC4-201ENST00000344722 A0A0A0MQY5 61 aa10.71□□□□□ -0.7
SMC4-201ENST00000344722 KRTAP1-5Q9BYS1 174 aa10.71□□□□□ -0.7
SMC4-201ENST00000344722 FLNAP21333 2647 aaKnown RBP10.69□□□□□ -0.7
SMC4-201ENST00000344722 S4R3F8 94 aa10.69□□□□□ -0.7
SMC4-201ENST00000344722 A8MU10 97 aa10.68□□□□□ -0.7
SMC4-201ENST00000344722 CFAP54Q96N23 3096 aa10.67□□□□□ -0.7
SMC4-201ENST00000344722 HTTP42858 3142 aa10.62□□□□□ -0.71
SMC4-201ENST00000344722 KRTAP25-1Q3LHN0 102 aa10.62□□□□□ -0.71
SMC4-201ENST00000344722 USP24Q9UPU5 2620 aa10.62□□□□□ -0.71
SMC4-201ENST00000344722 A0A087X002 238 aa10.6□□□□□ -0.71
SMC4-201ENST00000344722 CAMK2N1Q7Z7J9 78 aa10.59□□□□□ -0.71
SMC4-201ENST00000344722 NOTCH2NLQ7Z3S9 236 aa10.58□□□□□ -0.72
SMC4-201ENST00000344722 ADM2Q7Z4H4 148 aa10.58□□□□□ -0.72
SMC4-201ENST00000344722 TRANK1O15050 2925 aa10.57□□□□□ -0.72
SMC4-201ENST00000344722 Q6ZSA8 131 aa10.57□□□□□ -0.72
SMC4-201ENST00000344722 ITPR3Q14573 2671 aa10.55□□□□□ -0.72
SMC4-201ENST00000344722 KRTAP7-1Q8IUC3 87 aa10.51□□□□□ -0.73
SMC4-201ENST00000344722 ATRQ13535 2644 aa10.51□□□□□ -0.73
SMC4-201ENST00000344722 J3QL48 77 aa10.5□□□□□ -0.73
SMC4-201ENST00000344722 PANO1I0J062 215 aa10.49□□□□□ -0.73
SMC4-201ENST00000344722 MGAM2Q2M2H8 2515 aa10.47□□□□□ -0.73
SMC4-201ENST00000344722 KRTAP16-1A8MUX0 517 aa10.46□□□□□ -0.73
SMC4-201ENST00000344722 KRTAP11-1Q8IUC1 163 aa10.44□□□□□ -0.74
SMC4-201ENST00000344722 GCN1Q92616 2671 aaKnown RBP10.42□□□□□ -0.74
SMC4-201ENST00000344722 HECTD1Q9ULT8 2610 aa10.42□□□□□ -0.74
SMC4-201ENST00000344722 R4GN34 69 aa10.41□□□□□ -0.74
SMC4-201ENST00000344722 MKI67P46013 3256 aaKnown RBP10.4□□□□□ -0.74
SMC4-201ENST00000344722 CHD6Q8TD26 2715 aa10.4□□□□□ -0.75
SMC4-201ENST00000344722 LAMA2P24043 3122 aaKnown RBP10.4□□□□□ -0.75
SMC4-201ENST00000344722 UNC79Q9P2D8 2635 aa10.36□□□□□ -0.75
SMC4-201ENST00000344722 MGAQ8IWI9 3026 aa10.35□□□□□ -0.75
SMC4-201ENST00000344722 KRTAP13-1Q8IUC0 172 aa10.34□□□□□ -0.75
SMC4-201ENST00000344722 AKAP13Q12802 2813 aa10.33□□□□□ -0.76
SMC4-201ENST00000344722 KRTAP10-1P60331 282 aa10.28□□□□□ -0.76
SMC4-201ENST00000344722 TRIOO75962 3097 aa10.28□□□□□ -0.76
SMC4-201ENST00000344722 M0QZ58 72 aa10.26□□□□□ -0.77
SMC4-201ENST00000344722 RANBP2P49792 3224 aaKnown RBP10.25□□□□□ -0.77
SMC4-201ENST00000344722 KRTAP10-2P60368 255 aa10.25□□□□□ -0.77
SMC4-201ENST00000344722 NDUFAF8A1L188 74 aa10.23□□□□□ -0.77
SMC4-201ENST00000344722 CENPEQ02224 2701 aa10.22□□□□□ -0.77
SMC4-201ENST00000344722 FRYQ5TBA9 3013 aa10.22□□□□□ -0.77
SMC4-201ENST00000344722 RPS29P62273 56 aaKnown RBP10.21□□□□□ -0.77
SMC4-201ENST00000344722 MAST4O15021 2626 aa10.21□□□□□ -0.77
SMC4-201ENST00000344722 NBEAL2Q6ZNJ1 2754 aa10.21□□□□□ -0.78
SMC4-201ENST00000344722 NBEAL1Q6ZS30 2694 aa10.2□□□□□ -0.78
SMC4-201ENST00000344722 A8MUU9 505 aa10.18□□□□□ -0.78
SMC4-201ENST00000344722 Q6ZRN7 208 aaPredicted RBP10.17□□□□□ -0.78
SMC4-201ENST00000344722 CFAP46Q8IYW2 2715 aa10.15□□□□□ -0.78
SMC4-201ENST00000344722 ZNF292O60281 2723 aa10.14□□□□□ -0.79
SMC4-201ENST00000344722 LAMA3Q16787 3333 aa10.13□□□□□ -0.79
SMC4-201ENST00000344722 FLNBO75369 2602 aaKnown RBP10.1□□□□□ -0.79
SMC4-201ENST00000344722 DSPP15924 2871 aaKnown RBP10.1□□□□□ -0.79
SMC4-201ENST00000344722 KRTAP13-2Q52LG2 175 aa10.1□□□□□ -0.79
SMC4-201ENST00000344722 WDFY4Q6ZS81 3184 aa10.09□□□□□ -0.79
SMC4-201ENST00000344722 HELZ2Q9BYK8 2649 aaKnown RBP10.07□□□□□ -0.8
SMC4-201ENST00000344722 VPS13AQ96RL7 3174 aa10.06□□□□□ -0.8
SMC4-201ENST00000344722 NBEAQ8NFP9 2946 aa10.06□□□□□ -0.8
SMC4-201ENST00000344722 BRCA2P51587 3418 aa10.05□□□□□ -0.8
SMC4-201ENST00000344722 UNC80Q8N2C7 3258 aa10.05□□□□□ -0.8
SMC4-201ENST00000344722 SEC61BP60468 96 aaKnown RBP10.04□□□□□ -0.8
SMC4-201ENST00000344722 KALRNO60229 2985 aa10.04□□□□□ -0.8
SMC4-201ENST00000344722 DMBT1Q9UGM3 2413 aaPredicted RBP10.03□□□□□ -0.8
SMC4-201ENST00000344722 SETXQ7Z333 2677 aaKnown RBP9.98□□□□□ -0.81
SMC4-201ENST00000344722 FREM2Q5SZK8 3169 aa9.98□□□□□ -0.81
SMC4-201ENST00000344722 NOTCH1P46531 2555 aa9.98□□□□□ -0.81
SMC4-201ENST00000344722 TEX15Q9BXT5 2789 aa9.97□□□□□ -0.81
SMC4-201ENST00000344722 Q5VSD8 79 aa9.94□□□□□ -0.82
SMC4-201ENST00000344722 PLAC4Q8WY50 150 aa9.94□□□□□ -0.82
SMC4-201ENST00000344722 ITPR1Q14643 2758 aa9.93□□□□□ -0.82
SMC4-201ENST00000344722 M0R2T5 61 aa9.91□□□□□ -0.82
SMC4-201ENST00000344722 DNAH14Q0VDD8 3507 aa9.9□□□□□ -0.83
SMC4-201ENST00000344722 H0YAA0 97 aa9.89□□□□□ -0.83
SMC4-201ENST00000344722 CELSR3Q9NYQ7 3312 aa9.89□□□□□ -0.83
SMC4-201ENST00000344722 TEP1Q99973 2627 aaKnown RBP9.89□□□□□ -0.83
SMC4-201ENST00000344722 XIRP2A4UGR9 3374 aa9.89□□□□□ -0.83
SMC4-201ENST00000344722 MAP1AP78559 2803 aaPredicted RBP9.88□□□□□ -0.83
SMC4-201ENST00000344722 C20orf166-AS1Q96NR2 134 aa9.88□□□□□ -0.83
SMC4-201ENST00000344722 BAHCC1Q9P281 2608 aa9.87□□□□□ -0.83
SMC4-201ENST00000344722 STAB1Q9NY15 2570 aa9.86□□□□□ -0.83
SMC4-201ENST00000344722 CDH23Q9H251 3354 aa9.84□□□□□ -0.83
SMC4-201ENST00000344722 COL6A5A8TX70 2615 aa9.83□□□□□ -0.84
SMC4-201ENST00000344722 PRUNE2Q8WUY3 3088 aa9.81□□□□□ -0.84
SMC4-201ENST00000344722 LAMA1P25391 3075 aa9.8□□□□□ -0.84
SMC4-201ENST00000344722 VCANP13611 3396 aa9.79□□□□□ -0.84
SMC4-201ENST00000344722 FLG2Q5D862 2391 aaPredicted RBP9.78□□□□□ -0.84
SMC4-201ENST00000344722 LRBAP50851 2863 aa9.76□□□□□ -0.85
SMC4-201ENST00000344722 C10orf95Q9H7T3 257 aa9.75□□□□□ -0.85
SMC4-201ENST00000344722 UBR5O95071 2799 aaPredicted RBP9.74□□□□□ -0.85
SMC4-201ENST00000344722 STAB2Q8WWQ8 2551 aa9.73□□□□□ -0.85
SMC4-201ENST00000344722 APCP25054 2843 aa9.73□□□□□ -0.85
SMC4-201ENST00000344722 IGSF10Q6WRI0 2623 aa9.73□□□□□ -0.85
SMC4-201ENST00000344722 ADGRG4Q8IZF6 3080 aa9.72□□□□□ -0.85
SMC4-201ENST00000344722 ZZEF1O43149 2961 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms