RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 CIRBP-AS1Q8TBR5 109 aa11.19□□□□□ -0.62
VIM-201ENST00000224237 TRBV7-4A0A0J9YYF1 115 aa11.18□□□□□ -0.62
VIM-201ENST00000224237 PKHD1P08F94 4074 aa11.17□□□□□ -0.62
VIM-201ENST00000224237 HAMPP81172 84 aa11.17□□□□□ -0.62
VIM-201ENST00000224237 Q6JHZ5 121 aa11.17□□□□□ -0.62
VIM-201ENST00000224237 SCXQ7RTU7 201 aa11.16□□□□□ -0.62
VIM-201ENST00000224237 C3orf22Q8N5N4 141 aa11.16□□□□□ -0.62
VIM-201ENST00000224237 C1orf137Q5JT78 98 aa11.15□□□□□ -0.63
VIM-201ENST00000224237 SMIM29Q86T20 159 aa11.12□□□□□ -0.63
VIM-201ENST00000224237 SVIPQ8NHG7 77 aa11.12□□□□□ -0.63
VIM-201ENST00000224237 A0A1B0GVY2 172 aa11.11□□□□□ -0.63
VIM-201ENST00000224237 UBL5Q9BZL1 73 aa11.11□□□□□ -0.63
VIM-201ENST00000224237 SRRM2Q9UQ35 2752 aaKnown RBP11.11□□□□□ -0.63
VIM-201ENST00000224237 SPRR1BP22528 89 aa11.1□□□□□ -0.63
VIM-201ENST00000224237 F8WEM9 126 aa11.1□□□□□ -0.63
VIM-201ENST00000224237 FAM236AA0A1B0GUQ0 79 aa11.09□□□□□ -0.63
VIM-201ENST00000224237 FAM236BA0A1B0GV22 79 aa11.09□□□□□ -0.63
VIM-201ENST00000224237 ZNF861PO60384 105 aa11.09□□□□□ -0.63
VIM-201ENST00000224237 ATP5EP2Q5VTU8 51 aa11.09□□□□□ -0.63
VIM-201ENST00000224237 IGKV3D-7A0A0C4DH55 119 aa11.07□□□□□ -0.64
VIM-201ENST00000224237 LRP1BQ9NZR2 4599 aa11.07□□□□□ -0.64
VIM-201ENST00000224237 IGLV7-43P04211 117 aa11.06□□□□□ -0.64
VIM-201ENST00000224237 ZNF706Q9Y5V0 76 aaPredicted RBP11.05□□□□□ -0.64
VIM-201ENST00000224237 RYR3Q15413 4870 aa11.05□□□□□ -0.64
VIM-201ENST00000224237 SPRR4Q96PI1 79 aa11.04□□□□□ -0.64
VIM-201ENST00000224237 DYNC1H1Q14204 4646 aaKnown RBP11.03□□□□□ -0.64
VIM-201ENST00000224237 IGLV8-61A0A075B6I0 122 aa11.03□□□□□ -0.64
VIM-201ENST00000224237 HIST1H4AP62805 103 aaKnown RBP11.03□□□□□ -0.64
VIM-201ENST00000224237 LINC00483Q53H64 154 aa11□□□□□ -0.65
VIM-201ENST00000224237 A0A1B0GW54 56 aa10.99□□□□□ -0.65
VIM-201ENST00000224237 Q6ZVQ6 151 aa10.98□□□□□ -0.65
VIM-201ENST00000224237 Q8NBF4 154 aa10.98□□□□□ -0.65
VIM-201ENST00000224237 A0A1W2PNM2 257 aa10.98□□□□□ -0.65
VIM-201ENST00000224237 ATOX1O00244 68 aa10.98□□□□□ -0.65
VIM-201ENST00000224237 CCDC179H3BU77 68 aa10.97□□□□□ -0.65
VIM-201ENST00000224237 IGFL1Q6UW32 110 aa10.97□□□□□ -0.65
VIM-201ENST00000224237 A0A087WVE0 104 aa10.94□□□□□ -0.66
VIM-201ENST00000224237 CXCL6P80162 114 aa10.94□□□□□ -0.66
VIM-201ENST00000224237 CRYGAP11844 174 aa10.91□□□□□ -0.66
VIM-201ENST00000224237 UQCRQO14949 82 aa10.91□□□□□ -0.66
VIM-201ENST00000224237 APOBP04114 4563 aaKnown RBP10.9□□□□□ -0.66
VIM-201ENST00000224237 IGLV9-49A0A0B4J1Y8 123 aa10.9□□□□□ -0.66
VIM-201ENST00000224237 VPS13BQ7Z7G8 4022 aa10.9□□□□□ -0.66
VIM-201ENST00000224237 A0A0G2JQZ4 141 aa10.89□□□□□ -0.67
VIM-201ENST00000224237 RPL37AP61513 92 aaKnown RBP10.89□□□□□ -0.67
VIM-201ENST00000224237 C9orf153Q5TBE3 101 aa10.89□□□□□ -0.67
VIM-201ENST00000224237 COX7CP15954 63 aa10.89□□□□□ -0.67
VIM-201ENST00000224237 NREPQ16612 68 aa10.88□□□□□ -0.67
VIM-201ENST00000224237 ANAPC11Q9NYG5 84 aa10.86□□□□□ -0.67
VIM-201ENST00000224237 SMR3BP02814 79 aaPredicted RBP10.85□□□□□ -0.67
VIM-201ENST00000224237 SERP2Q8N6R1 65 aa10.85□□□□□ -0.67
VIM-201ENST00000224237 MOBPQ13875 183 aa10.83□□□□□ -0.68
VIM-201ENST00000224237 A0A087WSZ3 146 aa10.81□□□□□ -0.68
VIM-201ENST00000224237 FAT1Q14517 4588 aa10.79□□□□□ -0.68
VIM-201ENST00000224237 BPY2O14599 106 aa10.78□□□□□ -0.68
VIM-201ENST00000224237 FAM229BQ4G0N7 80 aa10.77□□□□□ -0.69
VIM-201ENST00000224237 SPINK6Q6UWN8 80 aa10.76□□□□□ -0.69
VIM-201ENST00000224237 SMIM20Q8N5G0 67 aa10.75□□□□□ -0.69
VIM-201ENST00000224237 SSBP3-AS1Q7Z2R9 100 aa10.74□□□□□ -0.69
VIM-201ENST00000224237 KRTAP1-4P0C5Y4 121 aa10.73□□□□□ -0.69
VIM-201ENST00000224237 SS18L2Q9UHA2 77 aa10.72□□□□□ -0.69
VIM-201ENST00000224237 A0A087X002 238 aa10.72□□□□□ -0.69
VIM-201ENST00000224237 HRCT1Q6UXD1 115 aa10.7□□□□□ -0.7
VIM-201ENST00000224237 TRAV7A0A075B6U4 112 aa10.7□□□□□ -0.7
VIM-201ENST00000224237 KRTAP10-4P60372 401 aaPredicted RBP10.7□□□□□ -0.7
VIM-201ENST00000224237 IGKV4-1P06312 121 aa10.69□□□□□ -0.7
VIM-201ENST00000224237 KRTAP13-2Q52LG2 175 aa10.68□□□□□ -0.7
VIM-201ENST00000224237 CD164Q04900 197 aa10.68□□□□□ -0.7
VIM-201ENST00000224237 HSPG2P98160 4391 aa10.67□□□□□ -0.7
VIM-201ENST00000224237 PLA2G1BP04054 148 aaKnown RBP10.67□□□□□ -0.7
VIM-201ENST00000224237 EPPK1P58107 5090 aaKnown RBP10.66□□□□□ -0.7
VIM-201ENST00000224237 CDK2AP2O75956 126 aa10.66□□□□□ -0.7
VIM-201ENST00000224237 Q8N9L7 120 aa10.66□□□□□ -0.7
VIM-201ENST00000224237 DSCR10P59022 87 aa10.65□□□□□ -0.7
VIM-201ENST00000224237 LINC00472Q9H8W2 130 aa10.65□□□□□ -0.7
VIM-201ENST00000224237 DEFB116Q30KQ4 102 aa10.64□□□□□ -0.71
VIM-201ENST00000224237 FAM229AH3BQW9 127 aa10.61□□□□□ -0.71
VIM-201ENST00000224237 K7EQZ3 153 aa10.6□□□□□ -0.71
VIM-201ENST00000224237 J3KT08 172 aa10.59□□□□□ -0.71
VIM-201ENST00000224237 Q96NJ1 140 aa10.59□□□□□ -0.71
VIM-201ENST00000224237 TYMSOSQ8TAI1 123 aa10.58□□□□□ -0.72
VIM-201ENST00000224237 RYR1P21817 5038 aa10.58□□□□□ -0.72
VIM-201ENST00000224237 KIAA1109Q2LD37 5005 aa10.58□□□□□ -0.72
VIM-201ENST00000224237 KRTAP17-1Q9BYP8 105 aa10.57□□□□□ -0.72
VIM-201ENST00000224237 CYSTM1Q9H1C7 97 aa10.57□□□□□ -0.72
VIM-201ENST00000224237 C20orf197Q8N268 126 aa10.57□□□□□ -0.72
VIM-201ENST00000224237 A8MWP4 228 aa10.55□□□□□ -0.72
VIM-201ENST00000224237 TMEM258P61165 79 aa10.55□□□□□ -0.72
VIM-201ENST00000224237 Q5VSD8 79 aa10.55□□□□□ -0.72
VIM-201ENST00000224237 KLKP1Q107X0 134 aa10.54□□□□□ -0.72
VIM-201ENST00000224237 PRR26Q8N8Z3 221 aa10.53□□□□□ -0.72
VIM-201ENST00000224237 ASB16-AS1Q495Z4 193 aa10.53□□□□□ -0.72
VIM-201ENST00000224237 PRR15Q8IV56 129 aa10.52□□□□□ -0.73
VIM-201ENST00000224237 OCR1Q9BZK8 76 aa10.52□□□□□ -0.73
VIM-201ENST00000224237 Q5XG85 94 aa10.51□□□□□ -0.73
VIM-201ENST00000224237 PKHD1L1Q86WI1 4243 aa10.51□□□□□ -0.73
VIM-201ENST00000224237 NDUFB1O75438 58 aa10.51□□□□□ -0.73
VIM-201ENST00000224237 C4orf48Q5BLP8 95 aa10.51□□□□□ -0.73
VIM-201ENST00000224237 LIMD2Q9BT23 127 aa10.49□□□□□ -0.73
VIM-201ENST00000224237 HCG22E2RYF7 251 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms