RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 NISCHQ9Y2I1 1504 aa41.06■■■■■ 4.16
VIM-201ENST00000224237 CCDC180Q9P1Z9 1646 aa35.84■■■■□ 3.33
VIM-201ENST00000224237 ZCCHC6Q5VYS8 1495 aaKnown RBP34.52■■■■□ 3.12
VIM-201ENST00000224237 ABCC9O60706 1549 aa34.08■■■■□ 3.05
VIM-201ENST00000224237 DCAF8L2P0C7V8 631 aa34.03■■■■□ 3.04
VIM-201ENST00000224237 DCAF1Q9Y4B6 1507 aa33.99■■■■□ 3.03
VIM-201ENST00000224237 MYO15BQ96JP2 1530 aa33.59■■■□□ 2.97
VIM-201ENST00000224237 SHROOM4Q9ULL8 1493 aa33.57■■■□□ 2.96
VIM-201ENST00000224237 NACADO15069 1562 aa33.36■■■□□ 2.93
VIM-201ENST00000224237 RB1CC1Q8TDY2 1594 aa33.12■■■□□ 2.89
VIM-201ENST00000224237 SCRIBQ14160 1630 aa33.04■■■□□ 2.88
VIM-201ENST00000224237 UNC13AQ9UPW8 1703 aa32.54■■■□□ 2.8
VIM-201ENST00000224237 SUPT5HO00267 1087 aaKnown RBP32.2■■■□□ 2.75
VIM-201ENST00000224237 BICRAQ9NZM4 1560 aa32.2■■■□□ 2.75
VIM-201ENST00000224237 PABPN1Q86U42 306 aaKnown RBP eCLIP32.14■■■□□ 2.74
VIM-201ENST00000224237 CECR2Q9BXF3 1484 aa31.99■■■□□ 2.71
VIM-201ENST00000224237 RSF1Q96T23 1441 aaPredicted RBP31.85■■■□□ 2.69
VIM-201ENST00000224237 MROH2BQ7Z745 1585 aa31.78■■■□□ 2.68
VIM-201ENST00000224237 BAZ1AQ9NRL2 1556 aaPredicted RBP31.73■■■□□ 2.67
VIM-201ENST00000224237 SMARCA4P51532 1647 aa31.61■■■□□ 2.65
VIM-201ENST00000224237 WIZO95785 1651 aa31.52■■■□□ 2.64
VIM-201ENST00000224237 EIF4G1Q04637 1599 aaKnown RBP31.22■■■□□ 2.59
VIM-201ENST00000224237 PEG3Q9GZU2 1588 aa31.21■■■□□ 2.59
VIM-201ENST00000224237 TOP2AP11388 1531 aaKnown RBP31.16■■■□□ 2.58
VIM-201ENST00000224237 ATAD2BQ9ULI0 1458 aa31.1■■■□□ 2.57
VIM-201ENST00000224237 SMARCA2P51531 1590 aa31.04■■■□□ 2.56
VIM-201ENST00000224237 BAZ1BQ9UIG0 1483 aaKnown RBP30.92■■■□□ 2.54
VIM-201ENST00000224237 CHIC1Q5VXU3 224 aa30.86■■■□□ 2.53
VIM-201ENST00000224237 CCDC88BA6NC98 1476 aa30.84■■■□□ 2.53
VIM-201ENST00000224237 NCAPD3P42695 1498 aa30.81■■■□□ 2.52
VIM-201ENST00000224237 CC2D2AQ9P2K1 1620 aa30.8■■■□□ 2.52
VIM-201ENST00000224237 HMGXB3Q12766 1538 aa30.76■■■□□ 2.52
VIM-201ENST00000224237 TRIM41Q8WV44 630 aa30.31■■■□□ 2.44
VIM-201ENST00000224237 ABCC8Q09428 1581 aa30.23■■■□□ 2.43
VIM-201ENST00000224237 DNAJC5BQ9UF47 199 aa30.18■■■□□ 2.42
VIM-201ENST00000224237 CFTRP13569 1480 aa30.12■■■□□ 2.41
VIM-201ENST00000224237 CADPSQ9ULU8 1353 aa30.03■■■□□ 2.4
VIM-201ENST00000224237 WRNQ14191 1432 aaPredicted RBP eCLIP30■■■□□ 2.39
VIM-201ENST00000224237 PRDM2Q13029 1718 aa29.99■■■□□ 2.39
VIM-201ENST00000224237 NESP48681 1621 aa29.91■■■□□ 2.38
VIM-201ENST00000224237 SYNJ1O43426 1573 aa29.9■■■□□ 2.38
VIM-201ENST00000224237 LAMC3Q9Y6N6 1575 aa29.78■■■□□ 2.36
VIM-201ENST00000224237 TOP2BQ02880 1626 aa29.77■■■□□ 2.36
VIM-201ENST00000224237 FAM9AQ8IZU1 332 aaPredicted RBP29.76■■■□□ 2.35
VIM-201ENST00000224237 BIVM-ERCC5R4GMW8 1640 aa29.74■■■□□ 2.35
VIM-201ENST00000224237 FANCD2Q9BXW9 1451 aa29.74■■■□□ 2.35
VIM-201ENST00000224237 CUX1P39880 1505 aa29.71■■■□□ 2.35
VIM-201ENST00000224237 LOC105371045A0A1W2PR82 267 aa29.65■■■□□ 2.34
VIM-201ENST00000224237 EEA1Q15075 1411 aa29.62■■■□□ 2.33
VIM-201ENST00000224237 SOGA1O94964 1423 aa29.61■■■□□ 2.33
VIM-201ENST00000224237 CEP164Q9UPV0 1460 aa29.54■■■□□ 2.32
VIM-201ENST00000224237 PDS5BQ9NTI5 1447 aa29.54■■■□□ 2.32
VIM-201ENST00000224237 RUSC2Q8N2Y8 1516 aa29.53■■■□□ 2.32
VIM-201ENST00000224237 KIF21AQ7Z4S6 1674 aa29.52■■■□□ 2.32
VIM-201ENST00000224237 DNMBPQ6XZF7 1577 aa29.42■■■□□ 2.3
VIM-201ENST00000224237 EHMT2Q96KQ7 1210 aa29.42■■■□□ 2.3
VIM-201ENST00000224237 TOPBP1Q92547 1522 aa29.4■■■□□ 2.3
VIM-201ENST00000224237 URB2Q14146 1524 aaKnown RBP29.4■■■□□ 2.3
VIM-201ENST00000224237 FGD5Q6ZNL6 1462 aa29.4■■■□□ 2.3
VIM-201ENST00000224237 CSRNP3Q8WYN3 585 aa29.39■■■□□ 2.3
VIM-201ENST00000224237 POLA1P09884 1462 aaPredicted RBP29.27■■■□□ 2.28
VIM-201ENST00000224237 KIF27Q86VH2 1401 aa29.25■■■□□ 2.27
VIM-201ENST00000224237 KIF21BO75037 1637 aa29.23■■■□□ 2.27
VIM-201ENST00000224237 MRC2Q9UBG0 1479 aa29.21■■■□□ 2.27
VIM-201ENST00000224237 RAD54L2Q9Y4B4 1467 aa29.21■■■□□ 2.27
VIM-201ENST00000224237 GOLGA3Q08378 1498 aa29.2■■■□□ 2.26
VIM-201ENST00000224237 ERCC6Q03468 1493 aa29.18■■■□□ 2.26
VIM-201ENST00000224237 CUX2O14529 1486 aa29.18■■■□□ 2.26
VIM-201ENST00000224237 TNIKQ9UKE5 1360 aa29.09■■■□□ 2.25
VIM-201ENST00000224237 ABCA10Q8WWZ4 1543 aa29.09■■■□□ 2.25
VIM-201ENST00000224237 WDR62O43379 1518 aa29.06■■■□□ 2.24
VIM-201ENST00000224237 PRXQ9BXM0 1461 aa29.05■■■□□ 2.24
VIM-201ENST00000224237 WDR97A6NE52 1622 aa29.04■■■□□ 2.24
VIM-201ENST00000224237 ERICH3Q5RHP9 1530 aa29.03■■■□□ 2.24
VIM-201ENST00000224237 THOC2Q8NI27 1593 aaKnown RBP29.03■■■□□ 2.24
VIM-201ENST00000224237 RAPGEF2Q9Y4G8 1499 aa29.02■■■□□ 2.24
VIM-201ENST00000224237 UBTFP17480 764 aaKnown RBP29.02■■■□□ 2.24
VIM-201ENST00000224237 TARBP1Q13395 1621 aaKnown RBP28.98■■■□□ 2.23
VIM-201ENST00000224237 IGF1RP08069 1367 aa28.95■■■□□ 2.23
VIM-201ENST00000224237 CEP162Q5TB80 1403 aa28.94■■■□□ 2.22
VIM-201ENST00000224237 TDRD9Q8NDG6 1382 aaKnown RBP28.92■■■□□ 2.22
VIM-201ENST00000224237 ABCA5Q8WWZ7 1642 aa28.89■■■□□ 2.21
VIM-201ENST00000224237 GAPVD1Q14C86 1478 aa28.82■■■□□ 2.2
VIM-201ENST00000224237 CARMIL1Q5VZK9 1371 aa28.82■■■□□ 2.2
VIM-201ENST00000224237 IFT140Q96RY7 1462 aa28.81■■■□□ 2.2
VIM-201ENST00000224237 CUL7Q14999 1698 aa28.79■■■□□ 2.2
VIM-201ENST00000224237 ZNF608Q9ULD9 1512 aaPredicted RBP28.76■■■□□ 2.19
VIM-201ENST00000224237 AQRO60306 1485 aaKnown RBP eCLIP28.76■■■□□ 2.192e-7■■■■□ 24.2
VIM-201ENST00000224237 CLIP1P30622 1438 aa28.71■■■□□ 2.19
VIM-201ENST00000224237 PBRM1Q86U86 1689 aa28.69■■■□□ 2.18
VIM-201ENST00000224237 EIF4G3O43432 1585 aaKnown RBP28.63■■■□□ 2.17
VIM-201ENST00000224237 RANGAP1P46060 587 aaPredicted RBP28.63■■■□□ 2.17
VIM-201ENST00000224237 GRIN2BQ13224 1484 aa28.59■■■□□ 2.17
VIM-201ENST00000224237 ADAMTS12P58397 1594 aa28.53■■■□□ 2.16
VIM-201ENST00000224237 FHAD1B1AJZ9 1412 aa28.49■■■□□ 2.15
VIM-201ENST00000224237 VPS8Q8N3P4 1428 aa28.47■■■□□ 2.15
VIM-201ENST00000224237 SNAPC4Q5SXM2 1469 aa28.47■■■□□ 2.15
VIM-201ENST00000224237 CTTNBP2Q8WZ74 1663 aa28.47■■■□□ 2.15
VIM-201ENST00000224237 ARAP1Q96P48 1450 aa28.42■■■□□ 2.14
VIM-201ENST00000224237 ARHGAP35Q9NRY4 1499 aa28.41■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms