RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 SORL1Q92673 2214 aa1.86□□□□□ -2.11
VPS41-212ENST00000482217 LOC730098B7Z3J9 87 aa1.85□□□□□ -2.11
VPS41-212ENST00000482217 RPL37P61927 97 aaKnown RBP1.85□□□□□ -2.11
VPS41-212ENST00000482217 ANGP03950 147 aaKnown RBP1.84□□□□□ -2.11
VPS41-212ENST00000482217 FXYD6P3P58550 94 aa1.84□□□□□ -2.11
VPS41-212ENST00000482217 DEFB103AP81534 67 aa1.84□□□□□ -2.11
VPS41-212ENST00000482217 PRO3102Q9H379 93 aa1.84□□□□□ -2.11
VPS41-212ENST00000482217 COL6A6A6NMZ7 2263 aa1.84□□□□□ -2.12
VPS41-212ENST00000482217 CACNA1EQ15878 2313 aa1.83□□□□□ -2.12
VPS41-212ENST00000482217 SPTY2D1-AS1A0A0U1RR47 76 aa1.83□□□□□ -2.12
VPS41-212ENST00000482217 PIN1P1O15428 100 aa1.83□□□□□ -2.12
VPS41-212ENST00000482217 SPINK13Q1W4C9 94 aa1.82□□□□□ -2.12
VPS41-212ENST00000482217 PCOTHQ58A44 107 aa1.82□□□□□ -2.12
VPS41-212ENST00000482217 FLG2Q5D862 2391 aaPredicted RBP1.81□□□□□ -2.12
VPS41-212ENST00000482217 DEFB131BA0A096LNP1 70 aa1.81□□□□□ -2.12
VPS41-212ENST00000482217 H0YGX0 51 aa1.81□□□□□ -2.12
VPS41-212ENST00000482217 RPL38P63173 70 aaKnown RBP1.81□□□□□ -2.12
VPS41-212ENST00000482217 LINC00575Q6W349 94 aa1.81□□□□□ -2.12
VPS41-212ENST00000482217 BRD3OSQ6XYD6 125 aa1.81□□□□□ -2.12
VPS41-212ENST00000482217 CDKN2A-AS1Q9UH64 79 aa1.81□□□□□ -2.12
VPS41-212ENST00000482217 DOPEY2Q9Y3R5 2298 aa1.8□□□□□ -2.12
VPS41-212ENST00000482217 NAV3Q8IVL0 2385 aa1.8□□□□□ -2.12
VPS41-212ENST00000482217 UBE2DNLQ8IWF7 75 aa1.8□□□□□ -2.12
VPS41-212ENST00000482217 LINC00158P58513 81 aa1.79□□□□□ -2.12
VPS41-212ENST00000482217 PRB3Q04118 309 aaPredicted RBP1.79□□□□□ -2.12
VPS41-212ENST00000482217 TFF3Q07654 80 aa1.79□□□□□ -2.12
VPS41-212ENST00000482217 FBN1P35555 2871 aaKnown RBP1.78□□□□□ -2.12
VPS41-212ENST00000482217 PIEZO2Q9H5I5 2752 aa1.78□□□□□ -2.12
VPS41-212ENST00000482217 JMJD1CQ15652 2540 aa1.78□□□□□ -2.12
VPS41-212ENST00000482217 I3L2K1 104 aa1.78□□□□□ -2.12
VPS41-212ENST00000482217 HIVEP2P31629 2446 aa1.77□□□□□ -2.13
VPS41-212ENST00000482217 KRTAP12-1P59990 96 aa1.77□□□□□ -2.13
VPS41-212ENST00000482217 BRCA2P51587 3418 aa1.76□□□□□ -2.13
VPS41-212ENST00000482217 PCNTO95613 3336 aa1.76□□□□□ -2.13
VPS41-212ENST00000482217 OTOGLQ3ZCN5 2332 aa1.76□□□□□ -2.13
VPS41-212ENST00000482217 Q8IZM0 81 aa1.76□□□□□ -2.13
VPS41-212ENST00000482217 C10orf95Q9H7T3 257 aa1.76□□□□□ -2.13
VPS41-212ENST00000482217 FAM208BQ5VWN6 2430 aa1.76□□□□□ -2.13
VPS41-212ENST00000482217 PLCE1Q9P212 2302 aa1.75□□□□□ -2.13
VPS41-212ENST00000482217 CENPFP49454 3210 aa1.75□□□□□ -2.13
VPS41-212ENST00000482217 HTTP42858 3142 aa1.75□□□□□ -2.13
VPS41-212ENST00000482217 MRPL33O75394 65 aaKnown RBP1.75□□□□□ -2.13
VPS41-212ENST00000482217 LYNX1P0DP58 116 aa1.75□□□□□ -2.13
VPS41-212ENST00000482217 LINC00308Q8TCZ7 52 aa1.75□□□□□ -2.13
VPS41-212ENST00000482217 Q9Y3F1 56 aa1.75□□□□□ -2.13
VPS41-212ENST00000482217 K7EQZ3 153 aa1.74□□□□□ -2.13
VPS41-212ENST00000482217 LELP1Q5T871 98 aa1.74□□□□□ -2.13
VPS41-212ENST00000482217 MRPL34Q9BQ48 92 aaKnown RBP1.74□□□□□ -2.13
VPS41-212ENST00000482217 TRIOBPQ9H2D6 2365 aa1.74□□□□□ -2.13
VPS41-212ENST00000482217 TP53AIP1Q9HCN2 124 aa1.73□□□□□ -2.13
VPS41-212ENST00000482217 CNTRLQ7Z7A1 2325 aa1.73□□□□□ -2.13
VPS41-212ENST00000482217 CEP350Q5VT06 3117 aa1.72□□□□□ -2.13
VPS41-212ENST00000482217 H0YAA0 97 aa1.72□□□□□ -2.13
VPS41-212ENST00000482217 TMEM167BQ9NRX6 74 aa1.72□□□□□ -2.13
VPS41-212ENST00000482217 K7EIL1 84 aa1.71□□□□□ -2.14
VPS41-212ENST00000482217 CD52P31358 61 aa1.71□□□□□ -2.14
VPS41-212ENST00000482217 KRTAP6-3Q3LI67 103 aa1.71□□□□□ -2.14
VPS41-212ENST00000482217 DEFB123Q8N688 67 aa1.71□□□□□ -2.14
VPS41-212ENST00000482217 PTPRQQ9UMZ3 2332 aa1.7□□□□□ -2.14
VPS41-212ENST00000482217 MKI67P46013 3256 aaKnown RBP1.7□□□□□ -2.14
VPS41-212ENST00000482217 DNAH12Q6ZR08 3092 aa1.7□□□□□ -2.14
VPS41-212ENST00000482217 COX6A2Q02221 97 aa1.69□□□□□ -2.14
VPS41-212ENST00000482217 ASH1LQ9NR48 2969 aaKnown RBP1.68□□□□□ -2.14
VPS41-212ENST00000482217 CDH23Q9H251 3354 aa1.67□□□□□ -2.14
VPS41-212ENST00000482217 PTPRZ1P23471 2315 aaPredicted RBP1.67□□□□□ -2.14
VPS41-212ENST00000482217 USF3Q68DE3 2245 aa1.67□□□□□ -2.14
VPS41-212ENST00000482217 REV3LO60673 3130 aa1.66□□□□□ -2.14
VPS41-212ENST00000482217 LYNX1G3V0Z9 82 aa1.66□□□□□ -2.14
VPS41-212ENST00000482217 DEFB106AQ8N104 65 aa1.66□□□□□ -2.14
VPS41-212ENST00000482217 USMG5Q96IX5 58 aa1.66□□□□□ -2.14
VPS41-212ENST00000482217 SMIM2Q9BVW6 85 aa1.66□□□□□ -2.14
VPS41-212ENST00000482217 LAMA3Q16787 3333 aa1.66□□□□□ -2.14
VPS41-212ENST00000482217 SPTBN5Q9NRC6 3674 aaKnown RBP1.65□□□□□ -2.14
VPS41-212ENST00000482217 XIRP2A4UGR9 3374 aa1.65□□□□□ -2.15
VPS41-212ENST00000482217 NDUFA1O15239 70 aa1.65□□□□□ -2.15
VPS41-212ENST00000482217 PIGYQ3MUY2 71 aa1.65□□□□□ -2.15
VPS41-212ENST00000482217 SZT2Q5T011 3432 aa1.65□□□□□ -2.15
VPS41-212ENST00000482217 LAMA2P24043 3122 aaKnown RBP1.64□□□□□ -2.15
VPS41-212ENST00000482217 RANBP2P49792 3224 aaKnown RBP1.64□□□□□ -2.15
VPS41-212ENST00000482217 MINOS1Q5TGZ0 78 aa1.64□□□□□ -2.15
VPS41-212ENST00000482217 Q6ZSA8 131 aa1.64□□□□□ -2.15
VPS41-212ENST00000482217 PDE4DIPQ5VU43 2346 aa1.63□□□□□ -2.15
VPS41-212ENST00000482217 IGF2RP11717 2491 aa1.63□□□□□ -2.15
VPS41-212ENST00000482217 CHD7Q9P2D1 2997 aa1.63□□□□□ -2.15
VPS41-212ENST00000482217 EYSQ5T1H1 3165 aa1.63□□□□□ -2.15
VPS41-212ENST00000482217 IAPPP10997 89 aa1.63□□□□□ -2.15
VPS41-212ENST00000482217 COX6B2Q6YFQ2 88 aa1.63□□□□□ -2.15
VPS41-212ENST00000482217 TNRC18O15417 2968 aaPredicted RBP1.63□□□□□ -2.15
VPS41-212ENST00000482217 CHD9Q3L8U1 2897 aa1.63□□□□□ -2.15
VPS41-212ENST00000482217 C6orf48Q9UBA6 75 aa1.62□□□□□ -2.15
VPS41-212ENST00000482217 C2CD3Q4AC94 2353 aa1.61□□□□□ -2.15
VPS41-212ENST00000482217 CNFNQ9BYD5 112 aa1.61□□□□□ -2.15
VPS41-212ENST00000482217 PRO0255Q9UI72 69 aa1.61□□□□□ -2.15
VPS41-212ENST00000482217 UNC80Q8N2C7 3258 aa1.61□□□□□ -2.15
VPS41-212ENST00000482217 TRANK1O15050 2925 aa1.6□□□□□ -2.15
VPS41-212ENST00000482217 USP34Q70CQ2 3546 aa1.6□□□□□ -2.15
VPS41-212ENST00000482217 CCL22O00626 93 aa1.6□□□□□ -2.15
VPS41-212ENST00000482217 SPRR1AP35321 89 aa1.6□□□□□ -2.15
VPS41-212ENST00000482217 RPS27P42677 84 aaKnown RBP1.6□□□□□ -2.15
VPS41-212ENST00000482217 KRTAP12-4P60329 112 aa1.6□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 111.2 ms