RNA–Protein interactions for RNA: ENST00000581631.1

SMCHD1-206, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 729 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-206ENST00000581631 SYS1-DBNDD2H3BUS1 97 aa0.06□□□□□ -2.4
SMCHD1-206ENST00000581631 H7BZZ5 65 aa0.06□□□□□ -2.4
SMCHD1-206ENST00000581631 M0R143 59 aa0.06□□□□□ -2.4
SMCHD1-206ENST00000581631 ASIPP42127 132 aa0.06□□□□□ -2.4
SMCHD1-206ENST00000581631 S100A10P60903 97 aa0.06□□□□□ -2.4
SMCHD1-206ENST00000581631 FDCSPQ8NFU4 85 aa0.06□□□□□ -2.4
SMCHD1-206ENST00000581631 PMCHL2Q9BQD1 86 aa0.06□□□□□ -2.4
SMCHD1-206ENST00000581631 FAT2Q9NYQ8 4349 aa0.06□□□□□ -2.4
SMCHD1-206ENST00000581631 BSNQ9UPA5 3926 aa0.06□□□□□ -2.4
SMCHD1-206ENST00000581631 ACANP16112 2415 aa0.06□□□□□ -2.4
SMCHD1-206ENST00000581631 REV3LO60673 3130 aa0.06□□□□□ -2.4
SMCHD1-206ENST00000581631 SAMD9Q5K651 1589 aa0.06□□□□□ -2.4
SMCHD1-206ENST00000581631 ANKRD36BQ8N2N9 1353 aa0.06□□□□□ -2.4
SMCHD1-206ENST00000581631 CCNB3Q8WWL7 1395 aa0.06□□□□□ -2.4
SMCHD1-206ENST00000581631 KNL1Q8NG31 2342 aa0.05□□□□□ -2.4
SMCHD1-206ENST00000581631 STAB2Q8WWQ8 2551 aa0.05□□□□□ -2.4
SMCHD1-206ENST00000581631 PREX1Q8TCU6 1659 aa0.05□□□□□ -2.4
SMCHD1-206ENST00000581631 POLR1AO95602 1720 aaPredicted RBP0.05□□□□□ -2.4
SMCHD1-206ENST00000581631 SCN11AQ9UI33 1791 aa0.05□□□□□ -2.4
SMCHD1-206ENST00000581631 HMCN2Q8NDA2 5059 aa0.05□□□□□ -2.4
SMCHD1-206ENST00000581631 UQCRHLA0A096LP55 91 aa0.05□□□□□ -2.4
SMCHD1-206ENST00000581631 A0A0G2JND7 137 aa0.05□□□□□ -2.4
SMCHD1-206ENST00000581631 TRBV7-7A0A0K0K1E9 115 aa0.05□□□□□ -2.4
SMCHD1-206ENST00000581631 LINC00959A0A1B0GUT2 108 aa0.05□□□□□ -2.4
SMCHD1-206ENST00000581631 C7orf77A4D0Y5 90 aa0.05□□□□□ -2.4
SMCHD1-206ENST00000581631 H0Y9P7 68 aa0.05□□□□□ -2.4
SMCHD1-206ENST00000581631 K7EQZ3 153 aa0.05□□□□□ -2.4
SMCHD1-206ENST00000581631 GYPAP02724 150 aa0.05□□□□□ -2.4
SMCHD1-206ENST00000581631 COL5A1-AS1Q5SY13 56 aa0.05□□□□□ -2.4
SMCHD1-206ENST00000581631 ZNF720Q7Z2F6 126 aa0.05□□□□□ -2.4
SMCHD1-206ENST00000581631 TNXBP22105 4242 aa0.05□□□□□ -2.4
SMCHD1-206ENST00000581631 TENM2Q9NT68 2774 aa0.05□□□□□ -2.4
SMCHD1-206ENST00000581631 CEP162Q5TB80 1403 aa0.04□□□□□ -2.4
SMCHD1-206ENST00000581631 PDE4DIPQ5VU43 2346 aa0.04□□□□□ -2.4
SMCHD1-206ENST00000581631 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.04□□□□□ -2.42e-10■■■■□ 26.6
SMCHD1-206ENST00000581631 LRRC9Q6ZRR7 1453 aa0.04□□□□□ -2.4
SMCHD1-206ENST00000581631 NBASA2RRP1 2371 aa0.04□□□□□ -2.4
SMCHD1-206ENST00000581631 RYR3Q15413 4870 aa0.04□□□□□ -2.4
SMCHD1-206ENST00000581631 HECTD4Q9Y4D8 3996 aa0.04□□□□□ -2.4
SMCHD1-206ENST00000581631 RB1CC1Q8TDY2 1594 aa0.04□□□□□ -2.4
SMCHD1-206ENST00000581631 A0A087WVE0 104 aa0.04□□□□□ -2.4
SMCHD1-206ENST00000581631 A0A1B0GU69 56 aa0.04□□□□□ -2.4
SMCHD1-206ENST00000581631 ARMS2P0C7Q2 107 aa0.04□□□□□ -2.4
SMCHD1-206ENST00000581631 SPRR1BP22528 89 aa0.04□□□□□ -2.4
SMCHD1-206ENST00000581631 SPRR2DP22532 72 aa0.04□□□□□ -2.4
SMCHD1-206ENST00000581631 SMIM11AP58511 58 aa0.04□□□□□ -2.4
SMCHD1-206ENST00000581631 PKIAP61925 76 aa0.04□□□□□ -2.4
SMCHD1-206ENST00000581631 GNGT1P63211 74 aa0.04□□□□□ -2.4
SMCHD1-206ENST00000581631 ETDBQ3ZM63 59 aa0.04□□□□□ -2.4
SMCHD1-206ENST00000581631 SFTA2Q6UW10 78 aa0.04□□□□□ -2.4
SMCHD1-206ENST00000581631 C6orf201Q7Z4U5 140 aa0.04□□□□□ -2.4
SMCHD1-206ENST00000581631 SPRR2GQ9BYE4 73 aa0.04□□□□□ -2.4
SMCHD1-206ENST00000581631 CRIPTQ9P021 101 aa0.04□□□□□ -2.4
SMCHD1-206ENST00000581631 ALMS1Q8TCU4 4167 aa0.04□□□□□ -2.4
SMCHD1-206ENST00000581631 NKTRP30414 1462 aaKnown RBP0.03□□□□□ -2.4
SMCHD1-206ENST00000581631 ABCC10Q5T3U5 1492 aa0.03□□□□□ -2.4
SMCHD1-206ENST00000581631 KIF14Q15058 1648 aa0.03□□□□□ -2.4
SMCHD1-206ENST00000581631 PRKDCP78527 4128 aaKnown RBP0.03□□□□□ -2.4
SMCHD1-206ENST00000581631 I3L3M4 83 aa0.03□□□□□ -2.4
SMCHD1-206ENST00000581631 CCL22O00626 93 aa0.03□□□□□ -2.4
SMCHD1-206ENST00000581631 MT-ATP8P03928 68 aa0.03□□□□□ -2.4
SMCHD1-206ENST00000581631 NCMAPQ5T1S8 102 aa0.03□□□□□ -2.4
SMCHD1-206ENST00000581631 RGPD1P0DJD0 1748 aa0.03□□□□□ -2.4
SMCHD1-206ENST00000581631 ABCA13Q86UQ4 5058 aa0.03□□□□□ -2.41
SMCHD1-206ENST00000581631 MAP1AP78559 2803 aaPredicted RBP0.03□□□□□ -2.41
SMCHD1-206ENST00000581631 CLIP1P30622 1438 aa0.03□□□□□ -2.41
SMCHD1-206ENST00000581631 TRANK1O15050 2925 aa0.03□□□□□ -2.41
SMCHD1-206ENST00000581631 NRXN1Q9ULB1 1477 aa0.03□□□□□ -2.41
SMCHD1-206ENST00000581631 LPAP08519 4548 aa0.03□□□□□ -2.41
SMCHD1-206ENST00000581631 TMEM131LA2VDJ0 1609 aa0.02□□□□□ -2.41
SMCHD1-206ENST00000581631 NESP48681 1621 aa0.02□□□□□ -2.41
SMCHD1-206ENST00000581631 TNRC6CQ9HCJ0 1690 aaKnown RBP0.02□□□□□ -2.41
SMCHD1-206ENST00000581631 C4AP0C0L4 1744 aa0.02□□□□□ -2.41
SMCHD1-206ENST00000581631 C4BP0C0L5 1744 aa0.02□□□□□ -2.41
SMCHD1-206ENST00000581631 D6R8Y8 96 aa0.02□□□□□ -2.41
SMCHD1-206ENST00000581631 FAUP35544 74 aaKnown RBP0.02□□□□□ -2.41
SMCHD1-206ENST00000581631 RPL38P63173 70 aaKnown RBP0.02□□□□□ -2.41
SMCHD1-206ENST00000581631 MUSTN1Q8IVN3 82 aa0.02□□□□□ -2.41
SMCHD1-206ENST00000581631 DEFB105AQ8NG35 78 aa0.02□□□□□ -2.41
SMCHD1-206ENST00000581631 LCN9Q8WX39 176 aa0.02□□□□□ -2.41
SMCHD1-206ENST00000581631 PSENENQ9NZ42 101 aa0.02□□□□□ -2.41
SMCHD1-206ENST00000581631 V9GYS6 101 aa0.02□□□□□ -2.41
SMCHD1-206ENST00000581631 PCNX1Q96RV3 2341 aa0.02□□□□□ -2.41
SMCHD1-206ENST00000581631 CFAP43Q8NDM7 1665 aa0.02□□□□□ -2.41
SMCHD1-206ENST00000581631 STAB1Q9NY15 2570 aa0.01□□□□□ -2.41
SMCHD1-206ENST00000581631 DDX60LQ5H9U9 1706 aaKnown RBP0.01□□□□□ -2.41
SMCHD1-206ENST00000581631 ARFGEF2Q9Y6D5 1785 aa0.01□□□□□ -2.41
SMCHD1-206ENST00000581631 BPTFQ12830 3046 aa0.01□□□□□ -2.41
SMCHD1-206ENST00000581631 SPTY2D1-AS1A0A0U1RR47 76 aa0.01□□□□□ -2.41
SMCHD1-206ENST00000581631 PVALEFA0A1B0GWK0 134 aa0.01□□□□□ -2.41
SMCHD1-206ENST00000581631 CPSF4LA6NMK7 179 aaKnown RBP0.01□□□□□ -2.41
SMCHD1-206ENST00000581631 LOC730098B7Z3J9 87 aa0.01□□□□□ -2.41
SMCHD1-206ENST00000581631 F8WEM9 126 aa0.01□□□□□ -2.41
SMCHD1-206ENST00000581631 LEPROTL1O95214 131 aa0.01□□□□□ -2.41
SMCHD1-206ENST00000581631 HMGN2P05204 90 aaKnown RBP0.01□□□□□ -2.41
SMCHD1-206ENST00000581631 PEA15Q15121 130 aa0.01□□□□□ -2.41
SMCHD1-206ENST00000581631 PLGLAQ15195 96 aa0.01□□□□□ -2.41
SMCHD1-206ENST00000581631 COX6B2Q6YFQ2 88 aa0.01□□□□□ -2.41
SMCHD1-206ENST00000581631 DEFB107AQ8IZN7 70 aa0.01□□□□□ -2.41
SMCHD1-206ENST00000581631 SNHG12Q9BXW3 62 aa0.01□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms