RNA–Protein interactions for RNA: ENST00000477334.1

RBM39-231, Transcript of RNA binding motif protein 39, human

TSL 2

Gene RBM39, Length 949 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-231	ENST00000477334	ZNF815P	A8K554	130 aa		0.84	□□□□□ -2.27
RBM39-231	ENST00000477334	SYS1-DBNDD2	H3BUS1	97 aa		0.84	□□□□□ -2.27
RBM39-231	ENST00000477334	GYPA	P02724	150 aa		0.84	□□□□□ -2.27
RBM39-231	ENST00000477334	SSBP3-AS1	Q7Z2R9	100 aa		0.84	□□□□□ -2.27
RBM39-231	ENST00000477334	FDCSP	Q8NFU4	85 aa		0.84	□□□□□ -2.27
RBM39-231	ENST00000477334	ADGRL2	O95490	1459 aa		0.84	□□□□□ -2.28
RBM39-231	ENST00000477334	PRRC2C	Q9Y520	2896 aa	Known RBP	0.84	□□□□□ -2.28
RBM39-231	ENST00000477334	SCN7A	Q01118	1682 aa		0.84	□□□□□ -2.28
RBM39-231	ENST00000477334	TG	P01266	2768 aa		0.84	□□□□□ -2.28
RBM39-231	ENST00000477334	HIVEP3	Q5T1R4	2406 aa		0.84	□□□□□ -2.28
RBM39-231	ENST00000477334	NUP188	Q5SRE5	1749 aa		0.84	□□□□□ -2.28
RBM39-231	ENST00000477334	DCHS2	Q6V1P9	2916 aa		0.83	□□□□□ -2.28
RBM39-231	ENST00000477334	GPR98	Q8WXG9	6306 aa		0.83	□□□□□ -2.28
RBM39-231	ENST00000477334	MXRA5	Q9NR99	2828 aa		0.83	□□□□□ -2.28
RBM39-231	ENST00000477334		A0A0D9SFI3	127 aa		0.83	□□□□□ -2.28
RBM39-231	ENST00000477334	TRBV7-7	A0A0K0K1E9	115 aa		0.83	□□□□□ -2.28
RBM39-231	ENST00000477334	IGF2R	P11717	2491 aa		0.83	□□□□□ -2.28
RBM39-231	ENST00000477334	NSD1	Q96L73	2696 aa	Predicted RBP	0.83	□□□□□ -2.28
RBM39-231	ENST00000477334	CSMD2	Q7Z408	3487 aa		0.83	□□□□□ -2.28
RBM39-231	ENST00000477334	OTOG	Q6ZRI0	2925 aa		0.83	□□□□□ -2.28
RBM39-231	ENST00000477334	KCP	Q6ZWJ8	1503 aa		0.83	□□□□□ -2.28
RBM39-231	ENST00000477334	CHD7	Q9P2D1	2997 aa		0.83	□□□□□ -2.28
RBM39-231	ENST00000477334	FSIP2	Q5CZC0	6907 aa		0.83	□□□□□ -2.28
RBM39-231	ENST00000477334	ABCA8	O94911	1581 aa		0.83	□□□□□ -2.28
RBM39-231	ENST00000477334	ADGRG4	Q8IZF6	3080 aa		0.83	□□□□□ -2.28
RBM39-231	ENST00000477334	SBF2	Q86WG5	1849 aa		0.82	□□□□□ -2.28
RBM39-231	ENST00000477334	ZNF236	Q9UL36	1845 aa		0.82	□□□□□ -2.28
RBM39-231	ENST00000477334	EEA1	Q15075	1411 aa		0.82	□□□□□ -2.28
RBM39-231	ENST00000477334	LAMA5	O15230	3695 aa		0.82	□□□□□ -2.28
RBM39-231	ENST00000477334	TNRC6C	Q9HCJ0	1690 aa	Known RBP	0.82	□□□□□ -2.28
RBM39-231	ENST00000477334	MEGF8	Q7Z7M0	2845 aa		0.82	□□□□□ -2.28
RBM39-231	ENST00000477334	MARF1	Q9Y4F3	1742 aa	Known RBP	0.82	□□□□□ -2.28
RBM39-231	ENST00000477334	TRBV25-1	A0A075B6N4	114 aa		0.82	□□□□□ -2.28
RBM39-231	ENST00000477334	TMEM263	Q8WUH6	116 aa	Known RBP	0.82	□□□□□ -2.28
RBM39-231	ENST00000477334	SPCS1	Q9Y6A9	102 aa		0.82	□□□□□ -2.28
RBM39-231	ENST00000477334	MGAM2	Q2M2H8	2515 aa		0.82	□□□□□ -2.28
RBM39-231	ENST00000477334	TENM2	Q9NT68	2774 aa		0.82	□□□□□ -2.28
RBM39-231	ENST00000477334	DMXL2	Q8TDJ6	3036 aa		0.82	□□□□□ -2.28
RBM39-231	ENST00000477334	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	0.82	□□□□□ -2.28
RBM39-231	ENST00000477334	PREX2	Q70Z35	1606 aa		0.82	□□□□□ -2.28
RBM39-231	ENST00000477334	CROCC2	H7BZ55	1655 aa		0.81	□□□□□ -2.28
RBM39-231	ENST00000477334	MGA	Q8IWI9	3026 aa		0.81	□□□□□ -2.28
RBM39-231	ENST00000477334	FANCD2	Q9BXW9	1451 aa		0.81	□□□□□ -2.28
RBM39-231	ENST00000477334	CUBN	O60494	3623 aa		0.81	□□□□□ -2.28
RBM39-231	ENST00000477334	URB2	Q14146	1524 aa	Known RBP	0.81	□□□□□ -2.28
RBM39-231	ENST00000477334	MAGI3	Q5TCQ9	1506 aa		0.81	□□□□□ -2.28
RBM39-231	ENST00000477334	ABCC2	Q92887	1545 aa		0.81	□□□□□ -2.28
RBM39-231	ENST00000477334	TRBV6-1	A0A0K0K1D8	114 aa		0.81	□□□□□ -2.28
RBM39-231	ENST00000477334	ZNF720	Q7Z2F6	126 aa		0.81	□□□□□ -2.28
RBM39-231	ENST00000477334	LINC00472	Q9H8W2	130 aa		0.81	□□□□□ -2.28
RBM39-231	ENST00000477334	PLAC8	Q9NZF1	115 aa		0.81	□□□□□ -2.28
RBM39-231	ENST00000477334	CLTC	Q00610	1675 aa	Known RBP	0.81	□□□□□ -2.28
RBM39-231	ENST00000477334	LAMA1	P25391	3075 aa		0.8	□□□□□ -2.28
RBM39-231	ENST00000477334	SLIT1	O75093	1534 aa		0.8	□□□□□ -2.28
RBM39-231	ENST00000477334	MAP3K1	Q13233	1512 aa		0.8	□□□□□ -2.28
RBM39-231	ENST00000477334	CAD	P27708	2225 aa		0.8	□□□□□ -2.28
RBM39-231	ENST00000477334	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	0.8	□□□□□ -2.28	2e-12	■■□□□ 13.7
RBM39-231	ENST00000477334	KIF14	Q15058	1648 aa		0.8	□□□□□ -2.28
RBM39-231	ENST00000477334	USP32	Q8NFA0	1604 aa		0.8	□□□□□ -2.28
RBM39-231	ENST00000477334	C7orf77	A4D0Y5	90 aa		0.8	□□□□□ -2.28
RBM39-231	ENST00000477334		H7BZZ5	65 aa		0.8	□□□□□ -2.28
RBM39-231	ENST00000477334	PRO0255	Q9UI72	69 aa		0.8	□□□□□ -2.28
RBM39-231	ENST00000477334	F8	P00451	2351 aa		0.8	□□□□□ -2.28
RBM39-231	ENST00000477334	COL4A6	Q14031	1691 aa		0.8	□□□□□ -2.28
RBM39-231	ENST00000477334	ZC3H13	Q5T200	1668 aa	Known RBP	0.8	□□□□□ -2.28
RBM39-231	ENST00000477334	POLR1A	O95602	1720 aa	Predicted RBP	0.8	□□□□□ -2.28
RBM39-231	ENST00000477334	RYR2	Q92736	4967 aa		0.8	□□□□□ -2.28
RBM39-231	ENST00000477334	DOPEY2	Q9Y3R5	2298 aa		0.8	□□□□□ -2.28
RBM39-231	ENST00000477334	ABCA13	Q86UQ4	5058 aa		0.79	□□□□□ -2.28
RBM39-231	ENST00000477334	DOCK11	Q5JSL3	2073 aa		0.79	□□□□□ -2.28
RBM39-231	ENST00000477334	SCRIB	Q14160	1630 aa		0.79	□□□□□ -2.28
RBM39-231	ENST00000477334	CCDC180	Q9P1Z9	1646 aa		0.79	□□□□□ -2.28
RBM39-231	ENST00000477334	C3	P01024	1663 aa		0.79	□□□□□ -2.28
RBM39-231	ENST00000477334	PAPPA2	Q9BXP8	1791 aa		0.79	□□□□□ -2.28
RBM39-231	ENST00000477334		A0A087WVE0	104 aa		0.79	□□□□□ -2.28
RBM39-231	ENST00000477334		H3BQF6	201 aa		0.79	□□□□□ -2.28
RBM39-231	ENST00000477334	ETDB	Q3ZM63	59 aa		0.79	□□□□□ -2.28
RBM39-231	ENST00000477334	C10orf113	Q5VZT2	155 aa		0.79	□□□□□ -2.28
RBM39-231	ENST00000477334	SPRR4	Q96PI1	79 aa		0.79	□□□□□ -2.28
RBM39-231	ENST00000477334	CNFN	Q9BYD5	112 aa		0.79	□□□□□ -2.28
RBM39-231	ENST00000477334	APC	P25054	2843 aa		0.79	□□□□□ -2.28
RBM39-231	ENST00000477334	WNK1	Q9H4A3	2382 aa		0.79	□□□□□ -2.28
RBM39-231	ENST00000477334	HERC1	Q15751	4861 aa		0.79	□□□□□ -2.28
RBM39-231	ENST00000477334	ABCC3	O15438	1527 aa		0.79	□□□□□ -2.28
RBM39-231	ENST00000477334	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	0.79	□□□□□ -2.28
RBM39-231	ENST00000477334	PTPRQ	Q9UMZ3	2332 aa		0.78	□□□□□ -2.28
RBM39-231	ENST00000477334	NBAS	A2RRP1	2371 aa		0.78	□□□□□ -2.28
RBM39-231	ENST00000477334	TENM3	Q9P273	2699 aa		0.78	□□□□□ -2.28
RBM39-231	ENST00000477334	ITPR2	Q14571	2701 aa		0.78	□□□□□ -2.28
RBM39-231	ENST00000477334	PVALEF	A0A1B0GWK0	134 aa		0.78	□□□□□ -2.28
RBM39-231	ENST00000477334	SMIM11A	P58511	58 aa		0.78	□□□□□ -2.28
RBM39-231	ENST00000477334	LINC01600	Q96MT4	127 aa		0.78	□□□□□ -2.28
RBM39-231	ENST00000477334	MYO7A	Q13402	2215 aa		0.78	□□□□□ -2.28
RBM39-231	ENST00000477334	ATP10B	O94823	1461 aa		0.78	□□□□□ -2.28
RBM39-231	ENST00000477334	POLA1	P09884	1462 aa	Predicted RBP	0.78	□□□□□ -2.28
RBM39-231	ENST00000477334	C1orf167	Q5SNV9	1468 aa		0.78	□□□□□ -2.28
RBM39-231	ENST00000477334	KDM3B	Q7LBC6	1761 aa		0.78	□□□□□ -2.29
RBM39-231	ENST00000477334	HERC2	O95714	4834 aa		0.77	□□□□□ -2.29
RBM39-231	ENST00000477334	SVEP1	Q4LDE5	3571 aa		0.77	□□□□□ -2.29
RBM39-231	ENST00000477334	CACNA1H	O95180	2353 aa		0.77	□□□□□ -2.29

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