RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 PRB1P04280 392 aa9.57□□□□□ -0.88
SHMT2-226ENST00000556825 ROS1P08922 2347 aa9.57□□□□□ -0.88
SHMT2-226ENST00000556825 IGKV3-7A0A075B6H7 116 aa9.56□□□□□ -0.88
SHMT2-226ENST00000556825 BSPH1Q075Z2 132 aa9.56□□□□□ -0.88
SHMT2-226ENST00000556825 Q6ZSN1 163 aa9.56□□□□□ -0.88
SHMT2-226ENST00000556825 SPTSSBQ8NFR3 76 aa9.56□□□□□ -0.88
SHMT2-226ENST00000556825 TLN1Q9Y490 2541 aaKnown RBP9.56□□□□□ -0.88
SHMT2-226ENST00000556825 NANOS2P60321 138 aaKnown RBP9.56□□□□□ -0.88
SHMT2-226ENST00000556825 TRBV6-8A0A0A6YYG3 113 aa9.55□□□□□ -0.88
SHMT2-226ENST00000556825 CYP4F30PQ9H0H9 118 aa9.55□□□□□ -0.88
SHMT2-226ENST00000556825 WNK2Q9Y3S1 2297 aa9.55□□□□□ -0.88
SHMT2-226ENST00000556825 G3V318 75 aa9.55□□□□□ -0.88
SHMT2-226ENST00000556825 NDUFA4O00483 81 aa9.55□□□□□ -0.88
SHMT2-226ENST00000556825 C7orf65Q6ZTY9 151 aa9.55□□□□□ -0.88
SHMT2-226ENST00000556825 LCA10Q71F78 164 aa9.55□□□□□ -0.88
SHMT2-226ENST00000556825 DIRC1Q969H9 104 aa9.55□□□□□ -0.88
SHMT2-226ENST00000556825 CHD6Q8TD26 2715 aa9.54□□□□□ -0.88
SHMT2-226ENST00000556825 HCG22E2RYF7 251 aa9.54□□□□□ -0.88
SHMT2-226ENST00000556825 CHKB-CPT1BH3BT56 60 aa9.54□□□□□ -0.88
SHMT2-226ENST00000556825 IGF2RP11717 2491 aa9.53□□□□□ -0.88
SHMT2-226ENST00000556825 ADGRG4Q8IZF6 3080 aa9.53□□□□□ -0.88
SHMT2-226ENST00000556825 USP24Q9UPU5 2620 aa9.52□□□□□ -0.88
SHMT2-226ENST00000556825 IGKV4-1P06312 121 aa9.52□□□□□ -0.88
SHMT2-226ENST00000556825 TOMM7Q9P0U1 55 aa9.52□□□□□ -0.88
SHMT2-226ENST00000556825 ABCA4P78363 2273 aa9.52□□□□□ -0.89
SHMT2-226ENST00000556825 PKDREJQ9NTG1 2253 aa9.52□□□□□ -0.89
SHMT2-226ENST00000556825 LCE6AA0A183 80 aa9.52□□□□□ -0.89
SHMT2-226ENST00000556825 LY6HO94772 140 aa9.52□□□□□ -0.89
SHMT2-226ENST00000556825 SPATA3Q8NHX4 192 aa9.52□□□□□ -0.89
SHMT2-226ENST00000556825 MUC7Q8TAX7 377 aa9.52□□□□□ -0.89
SHMT2-226ENST00000556825 LINC00575Q6W349 94 aa9.51□□□□□ -0.89
SHMT2-226ENST00000556825 CDC42SE2Q9NRR3 84 aa9.51□□□□□ -0.89
SHMT2-226ENST00000556825 KALRNO60229 2985 aa9.51□□□□□ -0.89
SHMT2-226ENST00000556825 RHPN1-AS1Q9BWJ2 59 aa9.51□□□□□ -0.89
SHMT2-226ENST00000556825 ESM1Q9NQ30 184 aa9.51□□□□□ -0.89
SHMT2-226ENST00000556825 SPTA1P02549 2419 aa9.51□□□□□ -0.89
SHMT2-226ENST00000556825 IGHV4-31P0DP07 118 aa9.5□□□□□ -0.89
SHMT2-226ENST00000556825 IGHV3-53P01767 116 aa9.5□□□□□ -0.89
SHMT2-226ENST00000556825 H3BQ85 93 aa9.48□□□□□ -0.89
SHMT2-226ENST00000556825 IGKV3-20P01619 116 aa9.48□□□□□ -0.89
SHMT2-226ENST00000556825 ZCCHC13Q8WW36 166 aaKnown RBP9.48□□□□□ -0.89
SHMT2-226ENST00000556825 IGHV4-38-2P0DP08 117 aa9.48□□□□□ -0.89
SHMT2-226ENST00000556825 SPINK13Q1W4C9 94 aa9.48□□□□□ -0.89
SHMT2-226ENST00000556825 LINC01006Q8NI28 216 aa9.48□□□□□ -0.89
SHMT2-226ENST00000556825 Q8N9L7 120 aa9.47□□□□□ -0.89
SHMT2-226ENST00000556825 LIMD2Q9BT23 127 aa9.47□□□□□ -0.89
SHMT2-226ENST00000556825 FBXL19-AS1Q494R0 122 aa9.47□□□□□ -0.89
SHMT2-226ENST00000556825 COL6A6A6NMZ7 2263 aa9.45□□□□□ -0.9
SHMT2-226ENST00000556825 C6orf99Q4VX62 202 aa9.45□□□□□ -0.9
SHMT2-226ENST00000556825 PRR26Q8N8Z3 221 aa9.45□□□□□ -0.9
SHMT2-226ENST00000556825 MINOS1-NBL1R4GNA1 71 aa9.45□□□□□ -0.9
SHMT2-226ENST00000556825 NBASA2RRP1 2371 aa9.45□□□□□ -0.9
SHMT2-226ENST00000556825 LYNX1G3V0Z9 82 aa9.44□□□□□ -0.9
SHMT2-226ENST00000556825 LYNX1P0DP58 116 aa9.44□□□□□ -0.9
SHMT2-226ENST00000556825 C19orf84I3L1E1 186 aa9.44□□□□□ -0.9
SHMT2-226ENST00000556825 FASNP49327 2511 aaKnown RBP9.43□□□□□ -0.9
SHMT2-226ENST00000556825 PRR3P79522 188 aaKnown RBP9.43□□□□□ -0.9
SHMT2-226ENST00000556825 FAM30AQ9NZY2 134 aa9.43□□□□□ -0.9
SHMT2-226ENST00000556825 RELNP78509 3460 aa9.43□□□□□ -0.9
SHMT2-226ENST00000556825 Q8N9P0 234 aaPredicted RBP9.43□□□□□ -0.9
SHMT2-226ENST00000556825 IGLV4-60A0A075B6I1 120 aa9.42□□□□□ -0.9
SHMT2-226ENST00000556825 Q75L30 129 aa9.41□□□□□ -0.9
SHMT2-226ENST00000556825 LINC00612Q8N6U2 182 aa9.41□□□□□ -0.9
SHMT2-226ENST00000556825 NKAPP1Q8N9T2 125 aa9.41□□□□□ -0.9
SHMT2-226ENST00000556825 HTN1P15515 57 aa9.4□□□□□ -0.9
SHMT2-226ENST00000556825 PRR15LQ9BU68 103 aa9.4□□□□□ -0.9
SHMT2-226ENST00000556825 ANKHD1Q8IWZ3 2542 aaKnown RBP9.4□□□□□ -0.91
SHMT2-226ENST00000556825 LMO4P61968 165 aa9.39□□□□□ -0.91
SHMT2-226ENST00000556825 CDC42SE1Q9NRR8 79 aa9.39□□□□□ -0.91
SHMT2-226ENST00000556825 MED13LQ71F56 2210 aa9.39□□□□□ -0.91
SHMT2-226ENST00000556825 A6NED7 52 aa9.38□□□□□ -0.91
SHMT2-226ENST00000556825 PRR4Q16378 134 aa9.38□□□□□ -0.91
SHMT2-226ENST00000556825 CELA1Q9UNI1 258 aa9.38□□□□□ -0.91
SHMT2-226ENST00000556825 IGHV3OR16-9A0A0B4J2B5 98 aa9.37□□□□□ -0.91
SHMT2-226ENST00000556825 DEFB114Q30KQ6 69 aa9.37□□□□□ -0.91
SHMT2-226ENST00000556825 Q6ZQY7 126 aa9.37□□□□□ -0.91
SHMT2-226ENST00000556825 SMIM29Q86T20 159 aa9.37□□□□□ -0.91
SHMT2-226ENST00000556825 COX7BP24311 80 aa9.37□□□□□ -0.91
SHMT2-226ENST00000556825 KHDC1LQ5JSQ8 128 aa9.37□□□□□ -0.91
SHMT2-226ENST00000556825 SPTBN1Q01082 2364 aaKnown RBP9.37□□□□□ -0.91
SHMT2-226ENST00000556825 HIVEP3Q5T1R4 2406 aa9.37□□□□□ -0.91
SHMT2-226ENST00000556825 DCHS2Q6V1P9 2916 aa9.36□□□□□ -0.91
SHMT2-226ENST00000556825 SORL1Q92673 2214 aa9.36□□□□□ -0.91
SHMT2-226ENST00000556825 LRBAP50851 2863 aa9.35□□□□□ -0.91
SHMT2-226ENST00000556825 ELOF1P60002 83 aaKnown RBP9.35□□□□□ -0.91
SHMT2-226ENST00000556825 NDUFB1O75438 58 aa9.35□□□□□ -0.91
SHMT2-226ENST00000556825 C5orf56Q8N8D9 126 aa9.35□□□□□ -0.91
SHMT2-226ENST00000556825 USMG5Q96IX5 58 aa9.35□□□□□ -0.91
SHMT2-226ENST00000556825 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.34□□□□□ -0.91
SHMT2-226ENST00000556825 TRGV2A0A075B6R0 118 aa9.34□□□□□ -0.91
SHMT2-226ENST00000556825 IGHV3-11P01762 117 aa9.34□□□□□ -0.91
SHMT2-226ENST00000556825 MOBPQ13875 183 aa9.34□□□□□ -0.91
SHMT2-226ENST00000556825 TACC2O95359 2948 aa9.34□□□□□ -0.91
SHMT2-226ENST00000556825 LOC101927531A0A1B0GV80 90 aa9.33□□□□□ -0.92
SHMT2-226ENST00000556825 PLA2G2AP14555 144 aa9.33□□□□□ -0.92
SHMT2-226ENST00000556825 C10orf25Q5T742 122 aa9.33□□□□□ -0.92
SHMT2-226ENST00000556825 B9D2Q9BPU9 175 aa9.33□□□□□ -0.92
SHMT2-226ENST00000556825 PRB2P02812 416 aaPredicted RBP9.33□□□□□ -0.92
SHMT2-226ENST00000556825 PRM2P04554 102 aa9.32□□□□□ -0.92
SHMT2-226ENST00000556825 VPREB1P12018 145 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms