RNA–Protein interactions for RNA: ENST00000554776.5

SCFD1-213, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-213ENST00000554776 HUWE1Q7Z6Z7 4374 aaKnown RBP0□□□□□ -2.41
SCFD1-213ENST00000554776 SMG6Q86US8 1419 aaKnown RBP0□□□□□ -2.41
SCFD1-213ENST00000554776 FAM223AQ8IWN6 122 aa0□□□□□ -2.41
SCFD1-213ENST00000554776 NXT2Q9NPJ8 142 aaKnown RBP0□□□□□ -2.41
SCFD1-213ENST00000554776 PKDREJQ9NTG1 2253 aa0□□□□□ -2.41
SCFD1-213ENST00000554776 TNXBP22105 4242 aa-0□□□□□ -2.41
SCFD1-213ENST00000554776 CSMD1Q96PZ7 3565 aa-0□□□□□ -2.41
SCFD1-213ENST00000554776 PCNTO95613 3336 aa-0□□□□□ -2.41
SCFD1-213ENST00000554776 MKI67P46013 3256 aaKnown RBP-0□□□□□ -2.41
SCFD1-213ENST00000554776 WDFY4Q6ZS81 3184 aa-0□□□□□ -2.41
SCFD1-213ENST00000554776 A0A0C4DFX4 3053 aa-0□□□□□ -2.41
SCFD1-213ENST00000554776 DNHD1Q96M86 4753 aa-0.01□□□□□ -2.41
SCFD1-213ENST00000554776 FAT1Q14517 4588 aa-0.01□□□□□ -2.41
SCFD1-213ENST00000554776 PKD1P98161 4303 aa-0.01□□□□□ -2.41
SCFD1-213ENST00000554776 MYO7BQ6PIF6 2116 aa-0.01□□□□□ -2.41
SCFD1-213ENST00000554776 USH2AO75445 5202 aa-0.01□□□□□ -2.41
SCFD1-213ENST00000554776 LRP1BQ9NZR2 4599 aa-0.01□□□□□ -2.41
SCFD1-213ENST00000554776 PZPP20742 1482 aa-0.01□□□□□ -2.41
SCFD1-213ENST00000554776 LRBAP50851 2863 aa-0.01□□□□□ -2.41
SCFD1-213ENST00000554776 NSD3Q9BZ95 1437 aa-0.01□□□□□ -2.41
SCFD1-213ENST00000554776 SNCAP37840 140 aa-0.01□□□□□ -2.41
SCFD1-213ENST00000554776 ATP5EP56381 51 aaPredicted RBP-0.01□□□□□ -2.41
SCFD1-213ENST00000554776 Q0VG73 95 aa-0.01□□□□□ -2.41
SCFD1-213ENST00000554776 CDC42SE2Q9NRR3 84 aa-0.01□□□□□ -2.41
SCFD1-213ENST00000554776 CEP290O15078 2479 aa-0.01□□□□□ -2.41
SCFD1-213ENST00000554776 SPTA1P02549 2419 aa-0.01□□□□□ -2.41
SCFD1-213ENST00000554776 STARD9Q9P2P6 4700 aa-0.01□□□□□ -2.41
SCFD1-213ENST00000554776 DOPEY2Q9Y3R5 2298 aa-0.01□□□□□ -2.41
SCFD1-213ENST00000554776 HSPG2P98160 4391 aa-0.01□□□□□ -2.41
SCFD1-213ENST00000554776 CRYBG3Q68DQ2 2970 aa-0.01□□□□□ -2.41
SCFD1-213ENST00000554776 PAPPAQ13219 1627 aa-0.02□□□□□ -2.41
SCFD1-213ENST00000554776 CC2D2AQ9P2K1 1620 aa-0.02□□□□□ -2.41
SCFD1-213ENST00000554776 NRKQ7Z2Y5 1582 aa-0.02□□□□□ -2.41
SCFD1-213ENST00000554776 FRYLO94915 3013 aa-0.02□□□□□ -2.41
SCFD1-213ENST00000554776 VCANP13611 3396 aa-0.02□□□□□ -2.41
SCFD1-213ENST00000554776 TRBV6-1A0A0K0K1D8 114 aa-0.02□□□□□ -2.41
SCFD1-213ENST00000554776 MGPP08493 103 aa-0.02□□□□□ -2.41
SCFD1-213ENST00000554776 SPRR1AP35321 89 aa-0.02□□□□□ -2.41
SCFD1-213ENST00000554776 DCDP81605 110 aaKnown RBP-0.02□□□□□ -2.41
SCFD1-213ENST00000554776 KRTAP20-2Q3LI61 65 aa-0.02□□□□□ -2.41
SCFD1-213ENST00000554776 TMEM203Q969S6 136 aa-0.02□□□□□ -2.41
SCFD1-213ENST00000554776 FAIMQ9NVQ4 179 aa-0.02□□□□□ -2.41
SCFD1-213ENST00000554776 LAMA1P25391 3075 aa-0.02□□□□□ -2.41
SCFD1-213ENST00000554776 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.02□□□□□ -2.413e-7■■■■■ 60.3
SCFD1-213ENST00000554776 MYCBP2O75592 4640 aa-0.02□□□□□ -2.41
SCFD1-213ENST00000554776 SCN7AQ01118 1682 aa-0.02□□□□□ -2.41
SCFD1-213ENST00000554776 ARHGEF12Q9NZN5 1544 aa-0.03□□□□□ -2.41
SCFD1-213ENST00000554776 MGAQ8IWI9 3026 aa-0.03□□□□□ -2.41
SCFD1-213ENST00000554776 CSMD2Q7Z408 3487 aa-0.03□□□□□ -2.41
SCFD1-213ENST00000554776 DNAH1Q9P2D7 4330 aa-0.03□□□□□ -2.41
SCFD1-213ENST00000554776 SPEGQ15772 3267 aa-0.03□□□□□ -2.41
SCFD1-213ENST00000554776 PCNX1Q96RV3 2341 aa-0.03□□□□□ -2.41
SCFD1-213ENST00000554776 FREM2Q5SZK8 3169 aa-0.03□□□□□ -2.41
SCFD1-213ENST00000554776 COL14A1Q05707 1796 aaKnown RBP-0.03□□□□□ -2.41
SCFD1-213ENST00000554776 FRYQ5TBA9 3013 aa-0.03□□□□□ -2.41
SCFD1-213ENST00000554776 DMXL2Q8TDJ6 3036 aa-0.03□□□□□ -2.41
SCFD1-213ENST00000554776 BRCA2P51587 3418 aa-0.03□□□□□ -2.41
SCFD1-213ENST00000554776 SZT2Q5T011 3432 aa-0.03□□□□□ -2.41
SCFD1-213ENST00000554776 UBA52P62987 128 aaKnown RBP-0.03□□□□□ -2.41
SCFD1-213ENST00000554776 KRTAP19-6Q3LI70 58 aa-0.03□□□□□ -2.41
SCFD1-213ENST00000554776 PIGYQ3MUY2 71 aa-0.03□□□□□ -2.41
SCFD1-213ENST00000554776 Q5VSD8 79 aa-0.03□□□□□ -2.41
SCFD1-213ENST00000554776 LAMA5O15230 3695 aa-0.03□□□□□ -2.41
SCFD1-213ENST00000554776 HMGXB3Q12766 1538 aa-0.03□□□□□ -2.41
SCFD1-213ENST00000554776 UTRNP46939 3433 aa-0.03□□□□□ -2.41
SCFD1-213ENST00000554776 EYSQ5T1H1 3165 aa-0.04□□□□□ -2.42
SCFD1-213ENST00000554776 C5orf42Q9H799 3197 aa-0.04□□□□□ -2.42
SCFD1-213ENST00000554776 TOP2BQ02880 1626 aa-0.04□□□□□ -2.42
SCFD1-213ENST00000554776 RAPGEF6Q8TEU7 1601 aa-0.04□□□□□ -2.42
SCFD1-213ENST00000554776 C10orf113Q5VZT2 155 aa-0.04□□□□□ -2.42
SCFD1-213ENST00000554776 FDCSPQ8NFU4 85 aa-0.04□□□□□ -2.42
SCFD1-213ENST00000554776 FAM167A-AS1Q96KT0 104 aa-0.04□□□□□ -2.42
SCFD1-213ENST00000554776 DNAH7Q8WXX0 4024 aa-0.04□□□□□ -2.42
SCFD1-213ENST00000554776 DYNC1H1Q14204 4646 aaKnown RBP-0.04□□□□□ -2.42
SCFD1-213ENST00000554776 DNAH5Q8TE73 4624 aa-0.04□□□□□ -2.42
SCFD1-213ENST00000554776 VPS13BQ7Z7G8 4022 aa-0.04□□□□□ -2.42
SCFD1-213ENST00000554776 CEP350Q5VT06 3117 aa-0.04□□□□□ -2.42
SCFD1-213ENST00000554776 HECTD4Q9Y4D8 3996 aa-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 SPTBN1Q01082 2364 aaKnown RBP-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 WNK1Q9H4A3 2382 aa-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 ACACAQ13085 2346 aa-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 CFAP54Q96N23 3096 aa-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 SVEP1Q4LDE5 3571 aa-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 CRYM-AS1A6NIL9 109 aa-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 C10orf142B7Z368 130 aa-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 TRAPPC2P0DI81 140 aa-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 TRAPPC2BP0DI82 140 aa-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 SPRR2EP22531 72 aa-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 SPRR2DP22532 72 aa-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 SPRR2BP35325 72 aa-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 SPRR2AP35326 72 aa-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 UBE2D3P61077 147 aa-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 UBE2D2P62837 147 aa-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 MRPS10P82664 201 aaKnown RBP-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 GTF2H5Q6ZYL4 71 aa-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 FLGP20930 4061 aaPredicted RBP-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 ARHGAP5Q13017 1502 aa-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 EHBP1L1Q8N3D4 1523 aa-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 URB1O60287 2271 aaKnown RBP-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 SPTAN1Q13813 2472 aaKnown RBP-0.05□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms