RNA–Protein interactions for RNA: ENST00000554776.5

SCFD1-213, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-213ENST00000554776 AEBP2Q6ZN18 517 aaPredicted RBP17.45■□□□□ 0.38
SCFD1-213ENST00000554776 CHIC1Q5VXU3 224 aa16.97■□□□□ 0.31
SCFD1-213ENST00000554776 PHF23Q9BUL5 403 aaPredicted RBP14.92□□□□□ -0.02
SCFD1-213ENST00000554776 SENP3Q9H4L4 574 aaPredicted RBP14.81□□□□□ -0.04
SCFD1-213ENST00000554776 FOXD1Q16676 465 aa13.75□□□□□ -0.21
SCFD1-213ENST00000554776 PLPPR3Q6T4P5 718 aa13.74□□□□□ -0.21
SCFD1-213ENST00000554776 PPP6R1Q9UPN7 881 aa13.18□□□□□ -0.3
SCFD1-213ENST00000554776 ADRA2BP18089 450 aa13.14□□□□□ -0.31
SCFD1-213ENST00000554776 PIAS4Q8N2W9 510 aaPredicted RBP12.93□□□□□ -0.34
SCFD1-213ENST00000554776 MSH5O43196 834 aa12.71□□□□□ -0.37
SCFD1-213ENST00000554776 PPP4R3CPQ6ZMV5 832 aa12.1□□□□□ -0.47
SCFD1-213ENST00000554776 SCAF1Q9H7N4 1312 aaKnown RBP12.03□□□□□ -0.48
SCFD1-213ENST00000554776 MAPK8IP2Q13387 824 aaPredicted RBP11.95□□□□□ -0.5
SCFD1-213ENST00000554776 POTEDQ86YR6 584 aa11.95□□□□□ -0.5
SCFD1-213ENST00000554776 DMRT2Q9Y5R5 561 aa11.82□□□□□ -0.52
SCFD1-213ENST00000554776 CNKSR2Q8WXI2 1034 aa11.78□□□□□ -0.52
SCFD1-213ENST00000554776 NCBP3Q53F19 620 aaKnown RBP11.76□□□□□ -0.53
SCFD1-213ENST00000554776 KCNA4P22459 653 aa11.74□□□□□ -0.53
SCFD1-213ENST00000554776 NPM3O75607 178 aaKnown RBP11.6□□□□□ -0.55
SCFD1-213ENST00000554776 RNF216Q9NWF9 866 aaPredicted RBP11.58□□□□□ -0.56
SCFD1-213ENST00000554776 HOXD11P31277 338 aaPredicted RBP11.56□□□□□ -0.56
SCFD1-213ENST00000554776 DNAJC5BQ9UF47 199 aa11.32□□□□□ -0.6
SCFD1-213ENST00000554776 DCAF8L1A6NGE4 600 aa11.25□□□□□ -0.61
SCFD1-213ENST00000554776 SLC4A1APQ9BWU0 796 aaKnown RBP11.16□□□□□ -0.62
SCFD1-213ENST00000554776 SLC4A2P04920 1241 aa10.97□□□□□ -0.65
SCFD1-213ENST00000554776 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.97□□□□□ -0.656e-8■□□□□ 8.2
SCFD1-213ENST00000554776 RNF39Q9H2S5 420 aa10.89□□□□□ -0.67
SCFD1-213ENST00000554776 FOXD4L1Q9NU39 408 aa10.83□□□□□ -0.68
SCFD1-213ENST00000554776 U3KPZ7 1027 aaPredicted RBP10.82□□□□□ -0.68
SCFD1-213ENST00000554776 ZBTB22O15209 634 aa10.81□□□□□ -0.68
SCFD1-213ENST00000554776 C1QBPQ07021 282 aaKnown RBP10.75□□□□□ -0.69
SCFD1-213ENST00000554776 EHMT2Q96KQ7 1210 aa10.74□□□□□ -0.69
SCFD1-213ENST00000554776 MYCNP04198 464 aaPredicted RBP10.72□□□□□ -0.69
SCFD1-213ENST00000554776 CSRNP3Q8WYN3 585 aa10.69□□□□□ -0.7
SCFD1-213ENST00000554776 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.65□□□□□ -0.7
SCFD1-213ENST00000554776 HNRNPUL2Q1KMD3 747 aaKnown RBP10.65□□□□□ -0.7
SCFD1-213ENST00000554776 CACNB1Q02641 598 aaPredicted RBP10.62□□□□□ -0.71
SCFD1-213ENST00000554776 SAMD1Q6SPF0 538 aaPredicted RBP10.61□□□□□ -0.71
SCFD1-213ENST00000554776 APLP2Q06481 763 aa10.55□□□□□ -0.72
SCFD1-213ENST00000554776 SPINK5Q9NQ38 1064 aaPredicted RBP10.52□□□□□ -0.73
SCFD1-213ENST00000554776 ATXN8OSP0DMR3 200 aa10.48□□□□□ -0.73
SCFD1-213ENST00000554776 CAPN15O75808 1086 aa10.46□□□□□ -0.73
SCFD1-213ENST00000554776 ATF5Q9Y2D1 282 aaPredicted RBP10.44□□□□□ -0.74
SCFD1-213ENST00000554776 ZNF219Q9P2Y4 722 aaPredicted RBP10.42□□□□□ -0.74
SCFD1-213ENST00000554776 TRHP20396 242 aaPredicted RBP10.39□□□□□ -0.75
SCFD1-213ENST00000554776 DSG3P32926 999 aa10.33□□□□□ -0.76
SCFD1-213ENST00000554776 ABCB7O75027 752 aa10.26□□□□□ -0.77
SCFD1-213ENST00000554776 POLA2Q14181 598 aa10.22□□□□□ -0.77
SCFD1-213ENST00000554776 ZBTB12Q9Y330 459 aaPredicted RBP10.07□□□□□ -0.8
SCFD1-213ENST00000554776 FBLN2P98095 1184 aa9.99□□□□□ -0.81
SCFD1-213ENST00000554776 MKRN4PQ13434 485 aaPredicted RBP9.98□□□□□ -0.81
SCFD1-213ENST00000554776 OSCARQ8IYS5 282 aa9.88□□□□□ -0.83
SCFD1-213ENST00000554776 RBM42Q9BTD8 480 aaKnown RBP9.84□□□□□ -0.83
SCFD1-213ENST00000554776 SPDYE2BA6NHP3 402 aa9.79□□□□□ -0.84
SCFD1-213ENST00000554776 SPDYE6P0CI01 402 aa9.79□□□□□ -0.84
SCFD1-213ENST00000554776 SPDYE2Q495Y8 402 aa9.79□□□□□ -0.84
SCFD1-213ENST00000554776 ZNF692Q9BU19 519 aaPredicted RBP9.72□□□□□ -0.85
SCFD1-213ENST00000554776 SSUH2Q9Y2M2 353 aa9.72□□□□□ -0.85
SCFD1-213ENST00000554776 SPDYE4A6NLX3 237 aa9.71□□□□□ -0.86
SCFD1-213ENST00000554776 AKT1S1Q96B36 256 aa9.71□□□□□ -0.86
SCFD1-213ENST00000554776 FKBP8Q14318 412 aa9.65□□□□□ -0.86
SCFD1-213ENST00000554776 REM2Q8IYK8 340 aaPredicted RBP9.61□□□□□ -0.87
SCFD1-213ENST00000554776 PABPN1Q86U42 306 aaKnown RBP eCLIP9.6□□□□□ -0.87
SCFD1-213ENST00000554776 PROM2Q8N271 834 aa9.58□□□□□ -0.88
SCFD1-213ENST00000554776 SPDYE1Q8NFV5 336 aaPredicted RBP9.51□□□□□ -0.89
SCFD1-213ENST00000554776 PITPNM1O00562 1244 aa9.5□□□□□ -0.89
SCFD1-213ENST00000554776 CHRDL2Q6WN34 429 aa9.45□□□□□ -0.9
SCFD1-213ENST00000554776 CLEC11AQ9Y240 323 aa9.44□□□□□ -0.9
SCFD1-213ENST00000554776 STAG3Q9UJ98 1225 aa9.43□□□□□ -0.9
SCFD1-213ENST00000554776 PRR29P0C7W0 189 aa9.36□□□□□ -0.91
SCFD1-213ENST00000554776 FXR2P51116 673 aaKnown RBP eCLIP9.36□□□□□ -0.91
SCFD1-213ENST00000554776 PIP4P2Q8N4L2 257 aa9.33□□□□□ -0.92
SCFD1-213ENST00000554776 FBXO3Q9UK99 471 aa9.33□□□□□ -0.92
SCFD1-213ENST00000554776 POTEHQ6S545 545 aa9.3□□□□□ -0.92
SCFD1-213ENST00000554776 PRKAR2AP13861 404 aaKnown RBP9.25□□□□□ -0.93
SCFD1-213ENST00000554776 CREBZFQ9NS37 354 aa9.25□□□□□ -0.93
SCFD1-213ENST00000554776 CHADLQ6NUI6 762 aa9.23□□□□□ -0.93
SCFD1-213ENST00000554776 VASPP50552 380 aaPredicted RBP9.21□□□□□ -0.94
SCFD1-213ENST00000554776 MIER1Q8N108 512 aa9.19□□□□□ -0.94
SCFD1-213ENST00000554776 PLCD3Q8N3E9 789 aa9.17□□□□□ -0.94
SCFD1-213ENST00000554776 MNX1P50219 401 aaPredicted RBP9.16□□□□□ -0.94
SCFD1-213ENST00000554776 PLEKHG5O94827 1062 aa9.15□□□□□ -0.94
SCFD1-213ENST00000554776 FARP1Q9Y4F1 1045 aaPredicted RBP9.15□□□□□ -0.94
SCFD1-213ENST00000554776 ZBTB47Q9UFB7 747 aaPredicted RBP9.1□□□□□ -0.95
SCFD1-213ENST00000554776 NPM1P06748 294 aaKnown RBP eCLIP9.08□□□□□ -0.96
SCFD1-213ENST00000554776 IFNLR1Q8IU57 520 aaPredicted RBP9.08□□□□□ -0.96
SCFD1-213ENST00000554776 C19orf67A6NJJ6 358 aa9.04□□□□□ -0.96
SCFD1-213ENST00000554776 KLHL34Q8N239 644 aa9.04□□□□□ -0.96
SCFD1-213ENST00000554776 HAX1O00165 279 aa9.02□□□□□ -0.97
SCFD1-213ENST00000554776 NUBP1P53384 320 aa9□□□□□ -0.97
SCFD1-213ENST00000554776 CD44P16070 742 aaKnown RBP8.99□□□□□ -0.97
SCFD1-213ENST00000554776 SPOCK2Q92563 424 aa8.98□□□□□ -0.97
SCFD1-213ENST00000554776 RASEFQ8IZ41 740 aa8.97□□□□□ -0.97
SCFD1-213ENST00000554776 EVX2Q03828 476 aa8.96□□□□□ -0.98
SCFD1-213ENST00000554776 PAK3O75914 559 aaPredicted RBP8.93□□□□□ -0.98
SCFD1-213ENST00000554776 ZRANB1Q9UGI0 708 aa8.92□□□□□ -0.98
SCFD1-213ENST00000554776 FAM212AQ96EL1 285 aa8.91□□□□□ -0.98
SCFD1-213ENST00000554776 TSPYL2Q9H2G4 693 aaPredicted RBP8.91□□□□□ -0.98
SCFD1-213ENST00000554776 ZNF579Q8NAF0 562 aaKnown RBP8.89□□□□□ -0.99
SCFD1-213ENST00000554776 CCDC61Q9Y6R9 512 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms