RNA–Protein interactions for RNA: YOR054C

VHS3, Transcript of Negative regulatory subunit of protein phosphatase 1 Ppz1p, yeast

Gene VHS3, Length 2,025 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VHS3	YOR054C	GPI10	P30777	616 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	DGR2	P32330	852 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	PRP19	P32523	503 aa	Known RBP	4.19	□□□□□ -1.74
VHS3	YOR054C	HBS1	P32769	611 aa	Known RBP	4.19	□□□□□ -1.74
VHS3	YOR054C	TFB1	P32776	642 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	STE5	P32917	917 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	XRS2	P33301	854 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	ETR1	P38071	380 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	YBR139W	P38109	508 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	4.19	□□□□□ -1.74	not detected
VHS3	YOR054C	RCK2	P38623	610 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	STP2	P38704	541 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	MTG2	P38860	518 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	NMD3	P38861	518 aa	Known RBP	4.19	□□□□□ -1.74
VHS3	YOR054C	MMM1	P41800	426 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	PGA2	P53903	129 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	SHR3	Q02774	210 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	YMR187C	Q03236	431 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	GIS4	Q04233	774 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	EST2	Q06163	884 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	BCP1	Q06338	283 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	GYP1	Q08484	637 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	MED4	Q12343	284 aa		4.19	□□□□□ -1.74
VHS3	YOR054C	TIF6	Q12522	245 aa	Known RBP	4.19	□□□□□ -1.74
VHS3	YOR054C	TEF1	P02994	458 aa	Known RBP	4.18	□□□□□ -1.74
VHS3	YOR054C	COR1	P07256	457 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	NUC1	P08466	329 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	PEP5	P12868	1029 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	MSD1	P15179	658 aa	Known RBP	4.18	□□□□□ -1.74
VHS3	YOR054C	EXO70	P19658	623 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	DBP3	P20447	523 aa	Known RBP	4.18	□□□□□ -1.74
VHS3	YOR054C	DBP5	P20449	482 aa	Known RBP	4.18	□□□□□ -1.74
VHS3	YOR054C	KIN3	P22209	435 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	VPS3	P23643	1011 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	NPP1	P25353	742 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	RRT12	P25381	491 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	CMK1	P27466	446 aa	Known RBP	4.18	□□□□□ -1.74
VHS3	YOR054C	ISF1	P32488	338 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	MAE1	P36013	669 aa	Known RBP	4.18	□□□□□ -1.74
VHS3	YOR054C	UTP30	P36144	274 aa	Known RBP	4.18	□□□□□ -1.74
VHS3	YOR054C	YBP1	P38315	674 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	TIF5	P38431	405 aa	Known RBP	4.18	□□□□□ -1.74
VHS3	YOR054C	ERG7	P38604	731 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	HXT5	P38695	592 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	GRE3	P38715	327 aa	Known RBP RIP-Chip data	4.18	□□□□□ -1.74	not detected
VHS3	YOR054C	YHL050C	P38721	697 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	VMA7	P39111	118 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	SAH1	P39954	449 aa	Known RBP	4.18	□□□□□ -1.74
VHS3	YOR054C	IES5	P40060	125 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	DSE1	P40077	573 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	YER137C	P40083	148 aa	Known RBP	4.18	□□□□□ -1.74
VHS3	YOR054C	DDI1	P40087	428 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	SBE2	P42223	864 aa	Known RBP	4.18	□□□□□ -1.74
VHS3	YOR054C	YFL066C	P43538	392 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	MSE1	P48525	536 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	UTP8	P53276	713 aa	Known RBP	4.18	□□□□□ -1.74
VHS3	YOR054C	ELA1	P53861	379 aa	Predicted RBP	4.18	□□□□□ -1.74
VHS3	YOR054C	JIP4	Q03361	876 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	HER2	Q03557	464 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	UTP14	Q04500	899 aa	Known RBP	4.18	□□□□□ -1.74
VHS3	YOR054C	KAR5	Q04746	504 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	IRC3	Q06683	689 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	DIA2	Q08496	732 aa	Predicted RBP	4.18	□□□□□ -1.74
VHS3	YOR054C	YPL216W	Q08964	1102 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	YPL277C	Q08989	487 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	RCN2	Q12044	265 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	SPE3	Q12074	293 aa	Known RBP	4.18	□□□□□ -1.74
VHS3	YOR054C	CEX1	Q12453	761 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	YEL077C	Q3E7X8	1277 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	NBL1	Q3E7Y6	73 aa		4.18	□□□□□ -1.74
VHS3	YOR054C	IPP1	P00817	287 aa	Known RBP	4.17	□□□□□ -1.74
VHS3	YOR054C	SSB1	P11484	613 aa	Known RBP	4.17	□□□□□ -1.74
VHS3	YOR054C	MRP13	P12686	339 aa		4.17	□□□□□ -1.74
VHS3	YOR054C	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	not detected
VHS3	YOR054C	KIP2	P28743	706 aa		4.17	□□□□□ -1.74
VHS3	YOR054C	ZIP1	P31111	875 aa		4.17	□□□□□ -1.74
VHS3	YOR054C	TPS2	P31688	896 aa	Known RBP	4.17	□□□□□ -1.74
VHS3	YOR054C	YKU70	P32807	602 aa		4.17	□□□□□ -1.74
VHS3	YOR054C	PTR2	P32901	601 aa		4.17	□□□□□ -1.74
VHS3	YOR054C	RFS1	P38234	210 aa	Known RBP	4.17	□□□□□ -1.74
VHS3	YOR054C	YHI9	P38765	294 aa		4.17	□□□□□ -1.74
VHS3	YOR054C	SPC97	P38863	823 aa		4.17	□□□□□ -1.74
VHS3	YOR054C	RGA1	P39083	1007 aa		4.17	□□□□□ -1.74
VHS3	YOR054C	SSB2	P40150	613 aa	Known RBP	4.17	□□□□□ -1.74
VHS3	YOR054C	YMR147W	P40218	223 aa	Known RBP	4.17	□□□□□ -1.74
VHS3	YOR054C	QDR2	P40474	542 aa		4.17	□□□□□ -1.74
VHS3	YOR054C	INP51	P40559	946 aa	Known RBP	4.17	□□□□□ -1.74
VHS3	YOR054C	EMP47	P43555	445 aa		4.17	□□□□□ -1.74
VHS3	YOR054C	DIE2	P50076	525 aa		4.17	□□□□□ -1.74
VHS3	YOR054C	LIF1	P53150	421 aa		4.17	□□□□□ -1.74
VHS3	YOR054C	COQ9	Q05779	260 aa		4.17	□□□□□ -1.74
VHS3	YOR054C	CDA1	Q06702	301 aa		4.17	□□□□□ -1.74
VHS3	YOR054C	BRE4	Q07660	1125 aa		4.17	□□□□□ -1.74
VHS3	YOR054C	SNX3	Q08826	162 aa	Known RBP	4.17	□□□□□ -1.74
VHS3	YOR054C	YPR202W	Q08993	238 aa		4.17	□□□□□ -1.74
VHS3	YOR054C	WSC3	Q12215	556 aa		4.17	□□□□□ -1.74
VHS3	YOR054C	SNU23	Q12368	194 aa	Predicted RBP	4.17	□□□□□ -1.74
VHS3	YOR054C	YBR298C-A	Q8TGK4	73 aa		4.17	□□□□□ -1.74
VHS3	YOR054C	AI5_ALPHA	Q9ZZX1	630 aa		4.17	□□□□□ -1.74
VHS3	YOR054C	CDC19	P00549	500 aa	Known RBP	4.17	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 73 ms