RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W PTC4P38089 393 aa9.65□□□□□ -0.87
UBP8YMR223W GRE2Q12068 342 aaKnown RBP9.65□□□□□ -0.87
UBP8YMR223W MIF2P35201 549 aa9.64□□□□□ -0.87
UBP8YMR223W YEL023CP39992 682 aa9.61□□□□□ -0.87
UBP8YMR223W PTC3P34221 468 aaKnown RBP9.59□□□□□ -0.87
UBP8YMR223W COQ8P27697 501 aa9.58□□□□□ -0.88
UBP8YMR223W GUT1P32190 709 aa9.58□□□□□ -0.88
UBP8YMR223W EDS1P38073 919 aa9.58□□□□□ -0.88
UBP8YMR223W NOP53Q12080 455 aaKnown RBP9.58□□□□□ -0.88
UBP8YMR223W ATH1P48016 1211 aa9.57□□□□□ -0.88
UBP8YMR223W YDL129WQ07555 291 aa9.56□□□□□ -0.88
UBP8YMR223W SAP30P38429 201 aa9.51□□□□□ -0.89
UBP8YMR223W CHL1P22516 861 aaPredicted RBP9.44□□□□□ -0.9
UBP8YMR223W NST1P53935 1240 aa9.43□□□□□ -0.9
UBP8YMR223W PRE3P38624 215 aa9.41□□□□□ -0.9
UBP8YMR223W AI4P03878 556 aa9.39□□□□□ -0.91
UBP8YMR223W SOL3P38858 249 aa9.39□□□□□ -0.91
UBP8YMR223W PML39Q03760 334 aa9.39□□□□□ -0.91
UBP8YMR223W MPH3P0CE00 602 aa9.39□□□□□ -0.91
UBP8YMR223W YGR273CP53329 174 aa9.33□□□□□ -0.92
UBP8YMR223W BCK2P33306 851 aa9.31□□□□□ -0.92
UBP8YMR223W SET1P38827 1080 aaKnown RBP9.29□□□□□ -0.92
UBP8YMR223W ARH1P48360 493 aa9.29□□□□□ -0.92
UBP8YMR223W ELP4Q02884 456 aaKnown RBP9.28□□□□□ -0.92
UBP8YMR223W MID1P41821 548 aa9.26□□□□□ -0.93
UBP8YMR223W ILV3P39522 585 aaKnown RBP9.24□□□□□ -0.93
UBP8YMR223W PEX29Q03370 554 aa9.23□□□□□ -0.93
UBP8YMR223W YDR344CQ05510 147 aa9.21□□□□□ -0.94
UBP8YMR223W SPT23P35210 1082 aa9.18□□□□□ -0.94
UBP8YMR223W IFH1P39520 1085 aa9.18□□□□□ -0.94
UBP8YMR223W HAP5Q02516 242 aa9.17□□□□□ -0.94
UBP8YMR223W VRP1P37370 817 aa9.15□□□□□ -0.94
UBP8YMR223W SLI15P38283 698 aa9.15□□□□□ -0.94
UBP8YMR223W XDJ1P39102 459 aa9.15□□□□□ -0.94
UBP8YMR223W KEX1P09620 729 aa9.14□□□□□ -0.95
UBP8YMR223W MPC54Q08550 464 aa9.14□□□□□ -0.95
UBP8YMR223W BNI4P53858 892 aa9.14□□□□□ -0.95
UBP8YMR223W DPL1Q05567 589 aa9.1□□□□□ -0.95
UBP8YMR223W UBP14P38237 781 aaKnown RBP9.09□□□□□ -0.95
UBP8YMR223W NMA111P53920 997 aa9.08□□□□□ -0.96
UBP8YMR223W YML082WQ04533 649 aaKnown RBP9.08□□□□□ -0.96
UBP8YMR223W YLR326WQ06170 240 aaKnown RBP9.07□□□□□ -0.96
UBP8YMR223W PTC2P39966 464 aaKnown RBP9.05□□□□□ -0.96
UBP8YMR223W YPR148CQ06523 435 aa9.05□□□□□ -0.96
UBP8YMR223W VHR2P40041 505 aa9.04□□□□□ -0.96
UBP8YMR223W ISU2Q12056 156 aa9.03□□□□□ -0.96
UBP8YMR223W RAD54P32863 898 aa9.01□□□□□ -0.97
UBP8YMR223W RPP1BP10622 106 aaKnown RBP9□□□□□ -0.97
UBP8YMR223W PCS60P38137 543 aaKnown RBP RIP-Chip data9□□□□□ -0.97not detected
UBP8YMR223W CDC73Q06697 393 aa8.97□□□□□ -0.97
UBP8YMR223W REF2P42073 533 aaPredicted RBP8.96□□□□□ -0.98
UBP8YMR223W YDR090CQ03193 310 aa8.95□□□□□ -0.98
UBP8YMR223W KIC1P38692 1080 aa8.94□□□□□ -0.98
UBP8YMR223W DPS1P04802 557 aaKnown RBP8.9□□□□□ -0.98
UBP8YMR223W RAM1P22007 431 aa8.89□□□□□ -0.99
UBP8YMR223W MAK21Q12176 1025 aaKnown RBP8.89□□□□□ -0.99
UBP8YMR223W VPS70P47161 811 aa8.88□□□□□ -0.99
UBP8YMR223W YPR015CQ12531 247 aa8.86□□□□□ -0.99
UBP8YMR223W CSC1Q06538 782 aa8.84□□□□□ -0.99
UBP8YMR223W COX6P00427 148 aa8.83□□□□□ -1
UBP8YMR223W GAP1P19145 602 aaPredicted RBP8.83□□□□□ -1
UBP8YMR223W TFB4Q12004 338 aa8.83□□□□□ -1
UBP8YMR223W PEX21P50091 288 aa8.81□□□□□ -1
UBP8YMR223W SAS4Q04003 481 aa8.81□□□□□ -1
UBP8YMR223W PDR1P12383 1068 aa8.8□□□□□ -1
UBP8YMR223W CKB1P43639 278 aa8.8□□□□□ -1
UBP8YMR223W GYP1Q08484 637 aa8.79□□□□□ -1
UBP8YMR223W ORC6P38826 435 aa8.77□□□□□ -1.01
UBP8YMR223W YRR1Q12172 810 aa8.75□□□□□ -1.01
UBP8YMR223W TUM1Q08686 304 aaKnown RBP8.71□□□□□ -1.01
UBP8YMR223W MVP1P40959 511 aaKnown RBP8.69□□□□□ -1.02
UBP8YMR223W BUD20Q08004 166 aaPredicted RBP8.69□□□□□ -1.02
UBP8YMR223W SAS10Q12136 610 aaPredicted RBP8.69□□□□□ -1.02
UBP8YMR223W PRT1P06103 763 aaKnown RBP8.68□□□□□ -1.02
UBP8YMR223W PBS2P08018 668 aa8.68□□□□□ -1.02
UBP8YMR223W AMS1P22855 1083 aa8.68□□□□□ -1.02
UBP8YMR223W MRF1P30775 413 aaPredicted RBP8.68□□□□□ -1.02
UBP8YMR223W DMA1P38823 416 aa8.67□□□□□ -1.02
UBP8YMR223W NUD1P32336 851 aa8.66□□□□□ -1.02
UBP8YMR223W RAS1P01119 309 aa8.65□□□□□ -1.02
UBP8YMR223W NPL4P33755 580 aa8.65□□□□□ -1.02
UBP8YMR223W STR2P47164 639 aa8.65□□□□□ -1.02
UBP8YMR223W SRC1Q03707 834 aa8.65□□□□□ -1.02
UBP8YMR223W RGR1P19263 1082 aa8.64□□□□□ -1.03
UBP8YMR223W ISM1P48526 1002 aa8.63□□□□□ -1.03
UBP8YMR223W YEL077CQ3E7X8 1277 aa8.63□□□□□ -1.03
UBP8YMR223W SDH2P21801 266 aa8.63□□□□□ -1.03
UBP8YMR223W PSE1P32337 1089 aaKnown RBP8.61□□□□□ -1.03
UBP8YMR223W YPR109WQ06104 294 aa8.61□□□□□ -1.03
UBP8YMR223W DSF2P38213 736 aa8.58□□□□□ -1.04
UBP8YMR223W MAM3Q12296 706 aa8.58□□□□□ -1.04
UBP8YMR223W ERG12P07277 443 aa8.55□□□□□ -1.04
UBP8YMR223W CLB5P30283 435 aa8.55□□□□□ -1.04
UBP8YMR223W GCD11P32481 527 aaKnown RBP8.55□□□□□ -1.04
UBP8YMR223W TY1A-DR4O74302 440 aa8.53□□□□□ -1.04
UBP8YMR223W TY1A-HP0C2I4 478 aaKnown RBP8.53□□□□□ -1.04
UBP8YMR223W TY1A-AP0CX57 440 aa8.53□□□□□ -1.04
UBP8YMR223W TY1A-PR1P0CX58 440 aa8.53□□□□□ -1.04
UBP8YMR223W TY1A-ORP0CX59 440 aa8.53□□□□□ -1.04
UBP8YMR223W TY1A-PR2P0CX60 440 aa8.53□□□□□ -1.04
Retrieved 100 of 5,963 RNA–protein pairs in 11.8 ms