RNA–Protein interactions for RNA: YMR075W

RCO1, Transcript of Essential component of the Rpd3S histone deacetylase complex, yeast

Gene RCO1, Length 2,055 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RCO1	YMR075W	YFR006W	P43590	535 aa		4.14	□□□□□ -1.75
RCO1	YMR075W	RTG3	P38165	486 aa		4.13	□□□□□ -1.75
RCO1	YMR075W	SPT23	P35210	1082 aa		4.1	□□□□□ -1.75
RCO1	YMR075W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	4.1	□□□□□ -1.75	not detected
RCO1	YMR075W	VPS29	P38759	282 aa		4.09	□□□□□ -1.75
RCO1	YMR075W	ARH1	P48360	493 aa		4.09	□□□□□ -1.75
RCO1	YMR075W	YLR271W	Q06152	274 aa		4.09	□□□□□ -1.75
RCO1	YMR075W	PML39	Q03760	334 aa		4.08	□□□□□ -1.76
RCO1	YMR075W	SRC1	Q03707	834 aa		4.07	□□□□□ -1.76
RCO1	YMR075W	PEX29	Q03370	554 aa		4.07	□□□□□ -1.76
RCO1	YMR075W	STS1	P38637	319 aa		4.06	□□□□□ -1.76
RCO1	YMR075W	TRK1	P12685	1235 aa		4.01	□□□□□ -1.77
RCO1	YMR075W	PTC2	P39966	464 aa	Known RBP	4.01	□□□□□ -1.77
RCO1	YMR075W	GRE2	Q12068	342 aa	Known RBP	4.01	□□□□□ -1.77
RCO1	YMR075W	HAP5	Q02516	242 aa		3.99	□□□□□ -1.77
RCO1	YMR075W	BNI4	P53858	892 aa		3.98	□□□□□ -1.77
RCO1	YMR075W	YPL062W	Q02781	134 aa		3.98	□□□□□ -1.77
RCO1	YMR075W	YML082W	Q04533	649 aa	Known RBP	3.98	□□□□□ -1.77
RCO1	YMR075W	GBP2	P25555	427 aa	Known RBP RIP-Chip data	3.97	□□□□□ -1.77	not detected
RCO1	YMR075W	TFA1	P36100	482 aa		3.96	□□□□□ -1.78
RCO1	YMR075W	ATH1	P48016	1211 aa		3.96	□□□□□ -1.78
RCO1	YMR075W	YDR344C	Q05510	147 aa		3.96	□□□□□ -1.78
RCO1	YMR075W	MGA2	P40578	1113 aa		3.93	□□□□□ -1.78
RCO1	YMR075W	GUT1	P32190	709 aa		3.92	□□□□□ -1.78
RCO1	YMR075W	SSP1	P38871	571 aa		3.91	□□□□□ -1.78
RCO1	YMR075W	MID1	P41821	548 aa		3.91	□□□□□ -1.78
RCO1	YMR075W	AMS1	P22855	1083 aa		3.9	□□□□□ -1.78
RCO1	YMR075W	RAS1	P01119	309 aa		3.9	□□□□□ -1.79
RCO1	YMR075W	GCR2	Q01722	534 aa		3.88	□□□□□ -1.79
RCO1	YMR075W	GYP1	Q08484	637 aa		3.88	□□□□□ -1.79
RCO1	YMR075W	AI4	P03878	556 aa		3.87	□□□□□ -1.79
RCO1	YMR075W	CST9	Q06032	482 aa		3.86	□□□□□ -1.79
RCO1	YMR075W	YEL077C	Q3E7X8	1277 aa		3.86	□□□□□ -1.79
RCO1	YMR075W	MPH3	P0CE00	602 aa		3.86	□□□□□ -1.79
RCO1	YMR075W	MIF2	P35201	549 aa		3.84	□□□□□ -1.79
RCO1	YMR075W	SAS4	Q04003	481 aa		3.84	□□□□□ -1.79
RCO1	YMR075W	GAR1	P28007	205 aa	Known RBP	3.83	□□□□□ -1.8
RCO1	YMR075W	RCR1	P38212	213 aa		3.82	□□□□□ -1.8
RCO1	YMR075W	MRF1	P30775	413 aa	Predicted RBP	3.81	□□□□□ -1.8
RCO1	YMR075W	PTC3	P34221	468 aa	Known RBP	3.81	□□□□□ -1.8
RCO1	YMR075W	BRE2	P43132	505 aa		3.81	□□□□□ -1.8
RCO1	YMR075W	NMA111	P53920	997 aa		3.81	□□□□□ -1.8
RCO1	YMR075W	MPC54	Q08550	464 aa		3.81	□□□□□ -1.8
RCO1	YMR075W	DPL1	Q05567	589 aa		3.78	□□□□□ -1.8
RCO1	YMR075W	NST1	P53935	1240 aa		3.76	□□□□□ -1.81
RCO1	YMR075W	ISU2	Q12056	156 aa		3.75	□□□□□ -1.81
RCO1	YMR075W	MAK11	P20484	414 aa	Known RBP	3.75	□□□□□ -1.81
RCO1	YMR075W	RPP1B	P10622	106 aa	Known RBP	3.71	□□□□□ -1.82
RCO1	YMR075W	SOL3	P38858	249 aa		3.71	□□□□□ -1.82
RCO1	YMR075W	ERG12	P07277	443 aa		3.7	□□□□□ -1.82
RCO1	YMR075W	EDS1	P38073	919 aa		3.7	□□□□□ -1.82
RCO1	YMR075W	YGR273C	P53329	174 aa		3.69	□□□□□ -1.82
RCO1	YMR075W	NOP53	Q12080	455 aa	Known RBP	3.69	□□□□□ -1.82
RCO1	YMR075W	YPR015C	Q12531	247 aa		3.69	□□□□□ -1.82
RCO1	YMR075W	ILV3	P39522	585 aa	Known RBP	3.69	□□□□□ -1.82
RCO1	YMR075W	SLI15	P38283	698 aa		3.68	□□□□□ -1.82
RCO1	YMR075W	MTC5	Q03897	1148 aa		3.68	□□□□□ -1.82
RCO1	YMR075W	RAM1	P22007	431 aa		3.67	□□□□□ -1.82
RCO1	YMR075W	COQ8	P27697	501 aa		3.67	□□□□□ -1.82
RCO1	YMR075W	ENV9	Q08651	330 aa		3.66	□□□□□ -1.82
RCO1	YMR075W	SDH2	P21801	266 aa		3.63	□□□□□ -1.83
RCO1	YMR075W	MET22	P32179	357 aa		3.63	□□□□□ -1.83
RCO1	YMR075W	CDC4	P07834	779 aa		3.62	□□□□□ -1.83
RCO1	YMR075W	PRT1	P06103	763 aa	Known RBP	3.61	□□□□□ -1.83
RCO1	YMR075W	YDR444W	Q04093	687 aa		3.61	□□□□□ -1.83
RCO1	YMR075W	PDR1	P12383	1068 aa		3.58	□□□□□ -1.84
RCO1	YMR075W	RAM2	P29703	316 aa		3.57	□□□□□ -1.84
RCO1	YMR075W	AIR1	P40507	360 aa	Known RBP	3.57	□□□□□ -1.84
RCO1	YMR075W	CDC73	Q06697	393 aa		3.56	□□□□□ -1.84
RCO1	YMR075W	SPT16	P32558	1035 aa	Known RBP	3.56	□□□□□ -1.84
RCO1	YMR075W	PEX21	P50091	288 aa		3.56	□□□□□ -1.84
RCO1	YMR075W	KEX1	P09620	729 aa		3.55	□□□□□ -1.84
RCO1	YMR075W	NPL4	P33755	580 aa		3.55	□□□□□ -1.84
RCO1	YMR075W	LCB5	Q06147	687 aa	Known RBP	3.55	□□□□□ -1.84
RCO1	YMR075W	PAT1	P25644	796 aa	Known RBP	3.55	□□□□□ -1.84
RCO1	YMR075W	LAM6	Q08001	693 aa		3.52	□□□□□ -1.85
RCO1	YMR075W	BUD20	Q08004	166 aa	Predicted RBP	3.52	□□□□□ -1.85
RCO1	YMR075W	CST6	P40535	587 aa		3.51	□□□□□ -1.85
RCO1	YMR075W	HST3	P53687	447 aa		3.51	□□□□□ -1.85
RCO1	YMR075W	HED1	Q03937	162 aa		3.51	□□□□□ -1.85
RCO1	YMR075W	FRK1	Q03002	865 aa	Predicted RBP	3.51	□□□□□ -1.85
RCO1	YMR075W	CLA4	P48562	842 aa		3.5	□□□□□ -1.85
RCO1	YMR075W	RAD54	P32863	898 aa		3.49	□□□□□ -1.85
RCO1	YMR075W	IFH1	P39520	1085 aa		3.48	□□□□□ -1.85
RCO1	YMR075W	YRR1	Q12172	810 aa		3.48	□□□□□ -1.85
RCO1	YMR075W	YDL176W	Q12027	708 aa		3.48	□□□□□ -1.85
RCO1	YMR075W	TFB4	Q12004	338 aa		3.47	□□□□□ -1.85
RCO1	YMR075W	GCD11	P32481	527 aa	Known RBP	3.46	□□□□□ -1.86
RCO1	YMR075W	AFT1	P22149	690 aa		3.45	□□□□□ -1.86
RCO1	YMR075W	TRK2	P28584	889 aa		3.45	□□□□□ -1.86
RCO1	YMR075W	ASH1	P34233	588 aa		3.45	□□□□□ -1.86
RCO1	YMR075W	KIC1	P38692	1080 aa		3.45	□□□□□ -1.86
RCO1	YMR075W	YGR035C	P53222	116 aa		3.45	□□□□□ -1.86
RCO1	YMR075W	NUD1	P32336	851 aa		3.45	□□□□□ -1.86
RCO1	YMR075W	YLR346C	Q06139	101 aa		3.45	□□□□□ -1.86
RCO1	YMR075W	RRD1	P40454	393 aa	Known RBP	3.44	□□□□□ -1.86
RCO1	YMR075W	ISM1	P48526	1002 aa		3.44	□□□□□ -1.86
RCO1	YMR075W	CSC1	Q06538	782 aa		3.44	□□□□□ -1.86
RCO1	YMR075W	BDP1	P46678	594 aa		3.43	□□□□□ -1.86
RCO1	YMR075W	STR2	P47164	639 aa		3.43	□□□□□ -1.86

Retrieved 100 of 5,963 RNA–protein pairs in 52.9 ms