RNA–Protein interactions for RNA: YKL130C

SHE2, Transcript of RNA-binding protein that binds specific mRNAs and interacts with She3p, yeastyeast

Gene SHE2, Length 741 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHE2YKL130C MIF2P35201 549 aa6.56□□□□□ -1.36
SHE2YKL130C PTC4P38089 393 aa6.56□□□□□ -1.36
SHE2YKL130C YDL129WQ07555 291 aa6.56□□□□□ -1.36
SHE2YKL130C GRE2Q12068 342 aaKnown RBP6.55□□□□□ -1.36
SHE2YKL130C MAK11P20484 414 aaKnown RBP6.53□□□□□ -1.36
SHE2YKL130C RAM2P29703 316 aa6.52□□□□□ -1.37
SHE2YKL130C CHL1P22516 861 aaPredicted RBP6.51□□□□□ -1.37
SHE2YKL130C BCK2P33306 851 aa6.5□□□□□ -1.37
SHE2YKL130C PRE3P38624 215 aa6.5□□□□□ -1.37
SHE2YKL130C ATH1P48016 1211 aa6.5□□□□□ -1.37
SHE2YKL130C PTC3P34221 468 aaKnown RBP6.48□□□□□ -1.37
SHE2YKL130C EDS1P38073 919 aa6.48□□□□□ -1.37
SHE2YKL130C GUT1P32190 709 aa6.46□□□□□ -1.38
SHE2YKL130C COQ8P27697 501 aa6.45□□□□□ -1.38
SHE2YKL130C PML39Q03760 334 aa6.45□□□□□ -1.38
SHE2YKL130C YDR344CQ05510 147 aa6.43□□□□□ -1.38
SHE2YKL130C NST1P53935 1240 aa6.41□□□□□ -1.38
SHE2YKL130C ELP4Q02884 456 aaKnown RBP6.39□□□□□ -1.39
SHE2YKL130C XDJ1P39102 459 aa6.36□□□□□ -1.39
SHE2YKL130C MID1P41821 548 aa6.36□□□□□ -1.39
SHE2YKL130C SOL3P38858 249 aa6.35□□□□□ -1.39
SHE2YKL130C PEX29Q03370 554 aa6.35□□□□□ -1.39
SHE2YKL130C VRP1P37370 817 aa6.34□□□□□ -1.39
SHE2YKL130C ARH1P48360 493 aa6.33□□□□□ -1.4
SHE2YKL130C AI4P03878 556 aa6.32□□□□□ -1.4
SHE2YKL130C MPH3P0CE00 602 aa6.32□□□□□ -1.4
SHE2YKL130C NOP53Q12080 455 aaKnown RBP6.31□□□□□ -1.4
SHE2YKL130C ILV3P39522 585 aaKnown RBP6.29□□□□□ -1.4
SHE2YKL130C YGR273CP53329 174 aa6.28□□□□□ -1.4
SHE2YKL130C SPT23P35210 1082 aa6.26□□□□□ -1.41
SHE2YKL130C HAP5Q02516 242 aa6.24□□□□□ -1.41
SHE2YKL130C DPS1P04802 557 aaKnown RBP6.21□□□□□ -1.42
SHE2YKL130C MPC54Q08550 464 aa6.21□□□□□ -1.42
SHE2YKL130C SLI15P38283 698 aa6.2□□□□□ -1.42
SHE2YKL130C BNI4P53858 892 aa6.2□□□□□ -1.42
SHE2YKL130C SET1P38827 1080 aaKnown RBP6.19□□□□□ -1.42
SHE2YKL130C PTC2P39966 464 aaKnown RBP6.19□□□□□ -1.42
SHE2YKL130C YML082WQ04533 649 aaKnown RBP6.18□□□□□ -1.42
SHE2YKL130C NMA111P53920 997 aa6.17□□□□□ -1.42
SHE2YKL130C DPL1Q05567 589 aa6.16□□□□□ -1.42
SHE2YKL130C KEX1P09620 729 aa6.15□□□□□ -1.42
SHE2YKL130C SRC1Q03707 834 aa6.12□□□□□ -1.43
SHE2YKL130C VHR2P40041 505 aa6.11□□□□□ -1.43
SHE2YKL130C YLR326WQ06170 240 aaKnown RBP6.09□□□□□ -1.43
SHE2YKL130C CDC73Q06697 393 aa6.09□□□□□ -1.43
SHE2YKL130C ISU2Q12056 156 aa6.09□□□□□ -1.43
SHE2YKL130C UBP14P38237 781 aaKnown RBP6.08□□□□□ -1.44
SHE2YKL130C YPR015CQ12531 247 aa6.07□□□□□ -1.44
SHE2YKL130C RAM1P22007 431 aa6.06□□□□□ -1.44
SHE2YKL130C RAD54P32863 898 aa6.06□□□□□ -1.44
SHE2YKL130C PCS60P38137 543 aaKnown RBP RIP-Chip data6.05□□□□□ -1.44not detected
SHE2YKL130C RPP1BP10622 106 aaKnown RBP6.03□□□□□ -1.44
SHE2YKL130C IFH1P39520 1085 aa6.02□□□□□ -1.45
SHE2YKL130C GYP1Q08484 637 aa6.02□□□□□ -1.45
SHE2YKL130C KIC1P38692 1080 aa6.01□□□□□ -1.45
SHE2YKL130C RAS1P01119 309 aa6□□□□□ -1.45
SHE2YKL130C PDR1P12383 1068 aa6□□□□□ -1.45
SHE2YKL130C YDR090CQ03193 310 aa5.97□□□□□ -1.45
SHE2YKL130C PEX21P50091 288 aa5.96□□□□□ -1.46
SHE2YKL130C SDH2P21801 266 aa5.95□□□□□ -1.46
SHE2YKL130C REF2P42073 533 aaPredicted RBP5.94□□□□□ -1.46
SHE2YKL130C AMS1P22855 1083 aa5.93□□□□□ -1.46
SHE2YKL130C SAS4Q04003 481 aa5.93□□□□□ -1.46
SHE2YKL130C RGA2Q06407 1009 aa5.93□□□□□ -1.46
SHE2YKL130C YRR1Q12172 810 aa5.93□□□□□ -1.46
SHE2YKL130C YPR148CQ06523 435 aa5.92□□□□□ -1.46
SHE2YKL130C VPS70P47161 811 aa5.91□□□□□ -1.46
SHE2YKL130C RGA1P39083 1007 aa5.9□□□□□ -1.46
SHE2YKL130C CSC1Q06538 782 aa5.89□□□□□ -1.47
SHE2YKL130C TUM1Q08686 304 aaKnown RBP5.88□□□□□ -1.47
SHE2YKL130C TFB4Q12004 338 aa5.88□□□□□ -1.47
SHE2YKL130C YEL077CQ3E7X8 1277 aa5.88□□□□□ -1.47
SHE2YKL130C PRT1P06103 763 aaKnown RBP5.87□□□□□ -1.47
SHE2YKL130C MRF1P30775 413 aaPredicted RBP5.87□□□□□ -1.47
SHE2YKL130C BUD20Q08004 166 aaPredicted RBP5.87□□□□□ -1.47
SHE2YKL130C TRK1P12685 1235 aa5.86□□□□□ -1.47
SHE2YKL130C GAP1P19145 602 aaPredicted RBP5.86□□□□□ -1.47
SHE2YKL130C NUD1P32336 851 aa5.85□□□□□ -1.47
SHE2YKL130C NPL4P33755 580 aa5.85□□□□□ -1.47
SHE2YKL130C STR2P47164 639 aa5.85□□□□□ -1.47
SHE2YKL130C ISM1P48526 1002 aa5.85□□□□□ -1.47
SHE2YKL130C COX6P00427 148 aa5.84□□□□□ -1.47
SHE2YKL130C ORC6P38826 435 aa5.84□□□□□ -1.47
SHE2YKL130C MAK21Q12176 1025 aaKnown RBP5.84□□□□□ -1.47
SHE2YKL130C ERG12P07277 443 aa5.81□□□□□ -1.48
SHE2YKL130C GCD11P32481 527 aaKnown RBP5.81□□□□□ -1.48
SHE2YKL130C MVP1P40959 511 aaKnown RBP5.8□□□□□ -1.48
SHE2YKL130C YPR109WQ06104 294 aa5.78□□□□□ -1.48
SHE2YKL130C SPT16P32558 1035 aaKnown RBP5.77□□□□□ -1.49
SHE2YKL130C RGR1P19263 1082 aa5.76□□□□□ -1.49
SHE2YKL130C TY1A-DR4O74302 440 aa5.75□□□□□ -1.49
SHE2YKL130C TY1A-HP0C2I4 478 aaKnown RBP5.75□□□□□ -1.49
SHE2YKL130C TY1A-AP0CX57 440 aa5.75□□□□□ -1.49
SHE2YKL130C TY1A-PR1P0CX58 440 aa5.75□□□□□ -1.49
SHE2YKL130C TY1A-ORP0CX59 440 aa5.75□□□□□ -1.49
SHE2YKL130C TY1A-PR2P0CX60 440 aa5.75□□□□□ -1.49
SHE2YKL130C TY1A-DR5P0CX65 440 aa5.75□□□□□ -1.49
SHE2YKL130C TY1A-ER2P0CX66 440 aa5.75□□□□□ -1.49
SHE2YKL130C TY1A-GR3P0CX67 440 aa5.75□□□□□ -1.49
SHE2YKL130C TY1A-LR1P0CX68 440 aa5.75□□□□□ -1.49
Retrieved 100 of 5,963 RNA–protein pairs in 14 ms