RNA–Protein interactions for RNA: YJL041W

NSP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NSP1, Length 2,472 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NSP1	YJL041W	RPN1	P38764	993 aa	Known RBP	4.73	□□□□□ -1.65
NSP1	YJL041W	TRP5	P00931	707 aa	Known RBP	4.72	□□□□□ -1.65
NSP1	YJL041W	MAK11	P20484	414 aa	Known RBP	4.72	□□□□□ -1.65
NSP1	YJL041W	EAP1	P36041	632 aa	Known RBP	4.72	□□□□□ -1.65
NSP1	YJL041W	YPR148C	Q06523	435 aa		4.72	□□□□□ -1.65
NSP1	YJL041W	NOP53	Q12080	455 aa	Known RBP	4.71	□□□□□ -1.66
NSP1	YJL041W	SPB4	P25808	606 aa	Predicted RBP	4.7	□□□□□ -1.66
NSP1	YJL041W	EDS1	P38073	919 aa		4.7	□□□□□ -1.66
NSP1	YJL041W	VPS70	P47161	811 aa		4.68	□□□□□ -1.66
NSP1	YJL041W	GYP5	Q12344	894 aa		4.68	□□□□□ -1.66
NSP1	YJL041W	AIM44	Q99299	758 aa		4.68	□□□□□ -1.66
NSP1	YJL041W	TCB3	Q03640	1545 aa	Known RBP	4.67	□□□□□ -1.66
NSP1	YJL041W	RTG1	P32607	177 aa		4.67	□□□□□ -1.66
NSP1	YJL041W	RPS0B	P46654	252 aa	Known RBP	4.67	□□□□□ -1.66
NSP1	YJL041W	DAN4	P47179	1161 aa		4.67	□□□□□ -1.66
NSP1	YJL041W	ABP1	P15891	592 aa	Known RBP	4.67	□□□□□ -1.66
NSP1	YJL041W	MNN4	P36044	1178 aa		4.66	□□□□□ -1.66
NSP1	YJL041W	YNL035C	P53962	389 aa	Known RBP	4.66	□□□□□ -1.66
NSP1	YJL041W	RLF2	Q12495	606 aa		4.66	□□□□□ -1.66
NSP1	YJL041W	PTC3	P34221	468 aa	Known RBP	4.65	□□□□□ -1.66
NSP1	YJL041W	COQ8	P27697	501 aa		4.65	□□□□□ -1.67
NSP1	YJL041W	SEC61	P32915	480 aa		4.64	□□□□□ -1.67
NSP1	YJL041W	MIF2	P35201	549 aa		4.64	□□□□□ -1.67
NSP1	YJL041W	DCW1	P36091	449 aa		4.64	□□□□□ -1.67
NSP1	YJL041W	NST1	P53935	1240 aa		4.64	□□□□□ -1.67
NSP1	YJL041W	QCR6	P00127	147 aa		4.63	□□□□□ -1.67
NSP1	YJL041W	HTA1	P04911	132 aa	Known RBP	4.63	□□□□□ -1.67
NSP1	YJL041W	HTA2	P04912	132 aa		4.63	□□□□□ -1.67
NSP1	YJL041W	NCR1	Q12200	1170 aa		4.63	□□□□□ -1.67
NSP1	YJL041W	YEL023C	P39992	682 aa		4.62	□□□□□ -1.67
NSP1	YJL041W	TCB2	P48231	1178 aa		4.62	□□□□□ -1.67
NSP1	YJL041W	JIP4	Q03361	876 aa		4.62	□□□□□ -1.67
NSP1	YJL041W	GRE2	Q12068	342 aa	Known RBP	4.62	□□□□□ -1.67
NSP1	YJL041W	YJL171C	P46992	396 aa		4.62	□□□□□ -1.67
NSP1	YJL041W	BMT6	Q12291	365 aa		4.62	□□□□□ -1.67
NSP1	YJL041W	PTC4	P38089	393 aa		4.61	□□□□□ -1.67
NSP1	YJL041W	DSF2	P38213	736 aa		4.61	□□□□□ -1.67
NSP1	YJL041W	SOL3	P38858	249 aa		4.61	□□□□□ -1.67
NSP1	YJL041W	PBS2	P08018	668 aa		4.6	□□□□□ -1.67
NSP1	YJL041W	GUT1	P32190	709 aa		4.6	□□□□□ -1.67
NSP1	YJL041W	RIX1	P38883	763 aa	Predicted RBP	4.6	□□□□□ -1.67
NSP1	YJL041W	MAK21	Q12176	1025 aa	Known RBP	4.58	□□□□□ -1.68
NSP1	YJL041W	REF2	P42073	533 aa	Predicted RBP	4.58	□□□□□ -1.68
NSP1	YJL041W	HGH1	P48362	394 aa	Known RBP	4.58	□□□□□ -1.68
NSP1	YJL041W	YNR021W	P53723	404 aa	Known RBP	4.58	□□□□□ -1.68
NSP1	YJL041W	ATH1	P48016	1211 aa		4.57	□□□□□ -1.68
NSP1	YJL041W	CHD1	P32657	1468 aa		4.57	□□□□□ -1.68
NSP1	YJL041W	MAM3	Q12296	706 aa		4.56	□□□□□ -1.68
NSP1	YJL041W	YDL129W	Q07555	291 aa		4.55	□□□□□ -1.68
NSP1	YJL041W	PLP2	Q12017	286 aa		4.55	□□□□□ -1.68
NSP1	YJL041W	ILV3	P39522	585 aa	Known RBP	4.54	□□□□□ -1.68
NSP1	YJL041W	SAP30	P38429	201 aa		4.54	□□□□□ -1.68
NSP1	YJL041W	YFR016C	P43597	1233 aa	Known RBP	4.54	□□□□□ -1.68
NSP1	YJL041W	YDR344C	Q05510	147 aa		4.54	□□□□□ -1.68
NSP1	YJL041W	AIM7	Q12156	149 aa		4.53	□□□□□ -1.68
NSP1	YJL041W	ENP1	P38333	483 aa	Known RBP	4.53	□□□□□ -1.68
NSP1	YJL041W	AI4	P03878	556 aa		4.52	□□□□□ -1.69
NSP1	YJL041W	MPH3	P0CE00	602 aa		4.52	□□□□□ -1.69
NSP1	YJL041W	DMA2	P53924	522 aa		4.52	□□□□□ -1.69
NSP1	YJL041W	YGR273C	P53329	174 aa		4.52	□□□□□ -1.69
NSP1	YJL041W	COX6	P00427	148 aa		4.51	□□□□□ -1.69
NSP1	YJL041W	TFG1	P41895	735 aa	Predicted RBP	4.51	□□□□□ -1.69
NSP1	YJL041W	PML39	Q03760	334 aa		4.51	□□□□□ -1.69
NSP1	YJL041W	HSP82	P02829	709 aa	Known RBP	4.51	□□□□□ -1.69
NSP1	YJL041W	KIN1	P13185	1064 aa		4.5	□□□□□ -1.69
NSP1	YJL041W	FPR3	P38911	411 aa	Known RBP	4.5	□□□□□ -1.69
NSP1	YJL041W	IES2	P40154	320 aa		4.49	□□□□□ -1.69
NSP1	YJL041W	MID1	P41821	548 aa		4.49	□□□□□ -1.69
NSP1	YJL041W	SSN2	P38931	1420 aa		4.48	□□□□□ -1.69
NSP1	YJL041W	PRE3	P38624	215 aa		4.48	□□□□□ -1.69
NSP1	YJL041W	SGS1	P35187	1447 aa		4.48	□□□□□ -1.69
NSP1	YJL041W	ATF2	P53296	535 aa		4.48	□□□□□ -1.69
NSP1	YJL041W	CHL1	P22516	861 aa	Predicted RBP	4.47	□□□□□ -1.69
NSP1	YJL041W	KIC1	P38692	1080 aa		4.47	□□□□□ -1.69
NSP1	YJL041W	NUP42	P49686	430 aa	Known RBP	4.46	□□□□□ -1.7
NSP1	YJL041W	GLC3	P32775	704 aa		4.46	□□□□□ -1.7
NSP1	YJL041W	STH1	P32597	1359 aa		4.45	□□□□□ -1.7
NSP1	YJL041W	UBP14	P38237	781 aa	Known RBP	4.45	□□□□□ -1.7
NSP1	YJL041W	ARH1	P48360	493 aa		4.45	□□□□□ -1.7
NSP1	YJL041W	SEC3	P33332	1336 aa	Known RBP	4.44	□□□□□ -1.7
NSP1	YJL041W	KEX1	P09620	729 aa		4.44	□□□□□ -1.7
NSP1	YJL041W	DIT2	P21595	489 aa		4.44	□□□□□ -1.7
NSP1	YJL041W	SLI15	P38283	698 aa		4.44	□□□□□ -1.7
NSP1	YJL041W	NAP1	P25293	417 aa	Known RBP	4.44	□□□□□ -1.7
NSP1	YJL041W	DEF1	P35732	738 aa	Known RBP	4.44	□□□□□ -1.7
NSP1	YJL041W	YLR326W	Q06170	240 aa	Known RBP	4.44	□□□□□ -1.7
NSP1	YJL041W	SPP41	P38904	1435 aa		4.43	□□□□□ -1.7
NSP1	YJL041W	NUG1	P40010	520 aa	Known RBP	4.43	□□□□□ -1.7
NSP1	YJL041W	MPC54	Q08550	464 aa		4.42	□□□□□ -1.7
NSP1	YJL041W	VHR2	P40041	505 aa		4.41	□□□□□ -1.7
NSP1	YJL041W	PEX29	Q03370	554 aa		4.41	□□□□□ -1.7
NSP1	YJL041W	PSE1	P32337	1089 aa	Known RBP	4.41	□□□□□ -1.7
NSP1	YJL041W	RAD54	P32863	898 aa		4.41	□□□□□ -1.7
NSP1	YJL041W	HPC2	Q01448	625 aa		4.41	□□□□□ -1.7
NSP1	YJL041W	BCK2	P33306	851 aa		4.4	□□□□□ -1.7
NSP1	YJL041W	INO80	P53115	1489 aa		4.4	□□□□□ -1.71
NSP1	YJL041W	YDR090C	Q03193	310 aa		4.4	□□□□□ -1.71
NSP1	YJL041W	RPP1B	P10622	106 aa	Known RBP	4.39	□□□□□ -1.71
NSP1	YJL041W	KRI1	P42846	591 aa	Known RBP	4.39	□□□□□ -1.71
NSP1	YJL041W	SSA2	P10592	639 aa	Known RBP	4.39	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 8.9 ms