RNA–Protein interactions for RNA: YER151C

UBP3, Transcript of Ubiquitin-specific protease involved in transport and osmotic response, yeast

Gene UBP3, Length 2,739 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP3	YER151C	MON2	P48563	1636 aa	Predicted RBP	3.06	□□□□□ -1.92
UBP3	YER151C	YEL023C	P39992	682 aa		3.06	□□□□□ -1.92
UBP3	YER151C	RGA1	P39083	1007 aa		3.05	□□□□□ -1.92
UBP3	YER151C	DAN4	P47179	1161 aa		3.05	□□□□□ -1.92
UBP3	YER151C	GBP2	P25555	427 aa	Known RBP RIP-Chip data	3.04	□□□□□ -1.92	not detected
UBP3	YER151C	PML39	Q03760	334 aa		3.04	□□□□□ -1.92
UBP3	YER151C	YLR271W	Q06152	274 aa		3.03	□□□□□ -1.92
UBP3	YER151C	PSD2	P53037	1138 aa	Known RBP	3.02	□□□□□ -1.93
UBP3	YER151C	SPT23	P35210	1082 aa		3.01	□□□□□ -1.93
UBP3	YER151C	VPS29	P38759	282 aa		3	□□□□□ -1.93
UBP3	YER151C	STS1	P38637	319 aa		2.99	□□□□□ -1.93
UBP3	YER151C	GRE2	Q12068	342 aa	Known RBP	2.98	□□□□□ -1.93
UBP3	YER151C	PTC2	P39966	464 aa	Known RBP	2.97	□□□□□ -1.93
UBP3	YER151C	ATH1	P48016	1211 aa		2.97	□□□□□ -1.93
UBP3	YER151C	ARH1	P48360	493 aa		2.97	□□□□□ -1.93
UBP3	YER151C	TRK1	P12685	1235 aa		2.93	□□□□□ -1.94
UBP3	YER151C	HAP5	Q02516	242 aa		2.93	□□□□□ -1.94
UBP3	YER151C	MIF2	P35201	549 aa		2.92	□□□□□ -1.94
UBP3	YER151C	YDR344C	Q05510	147 aa		2.92	□□□□□ -1.94
UBP3	YER151C	SSP1	P38871	571 aa		2.92	□□□□□ -1.94
UBP3	YER151C	MID1	P41821	548 aa		2.92	□□□□□ -1.94
UBP3	YER151C	GYP1	Q08484	637 aa		2.91	□□□□□ -1.94
UBP3	YER151C	GAR1	P28007	205 aa	Known RBP	2.91	□□□□□ -1.94
UBP3	YER151C	TFA1	P36100	482 aa		2.91	□□□□□ -1.94
UBP3	YER151C	SRC1	Q03707	834 aa		2.91	□□□□□ -1.94
UBP3	YER151C	INO80	P53115	1489 aa		2.9	□□□□□ -1.95
UBP3	YER151C	MGA2	P40578	1113 aa		2.9	□□□□□ -1.95
UBP3	YER151C	CST9	Q06032	482 aa		2.89	□□□□□ -1.95
UBP3	YER151C	BNI4	P53858	892 aa		2.88	□□□□□ -1.95
UBP3	YER151C	RAS1	P01119	309 aa		2.88	□□□□□ -1.95
UBP3	YER151C	GUT1	P32190	709 aa		2.88	□□□□□ -1.95
UBP3	YER151C	GCR2	Q01722	534 aa		2.86	□□□□□ -1.95
UBP3	YER151C	YML082W	Q04533	649 aa	Known RBP	2.86	□□□□□ -1.95
UBP3	YER151C	SWR1	Q05471	1514 aa		2.86	□□□□□ -1.95
UBP3	YER151C	RCR1	P38212	213 aa		2.85	□□□□□ -1.95
UBP3	YER151C	YPL062W	Q02781	134 aa		2.85	□□□□□ -1.95
UBP3	YER151C	YEL077C	Q3E7X8	1277 aa		2.85	□□□□□ -1.95
UBP3	YER151C	AMS1	P22855	1083 aa		2.84	□□□□□ -1.96
UBP3	YER151C	NMA111	P53920	997 aa		2.83	□□□□□ -1.96
UBP3	YER151C	TCB3	Q03640	1545 aa	Known RBP	2.82	□□□□□ -1.96
UBP3	YER151C	KOG1	P38873	1557 aa		2.82	□□□□□ -1.96
UBP3	YER151C	SSK2	P53599	1579 aa		2.82	□□□□□ -1.96
UBP3	YER151C	PTC3	P34221	468 aa	Known RBP	2.81	□□□□□ -1.96
UBP3	YER151C	MPH3	P0CE00	602 aa		2.8	□□□□□ -1.96
UBP3	YER151C	MPC54	Q08550	464 aa		2.8	□□□□□ -1.96
UBP3	YER151C	TY1B-DR4	Q07793	1604 aa		2.8	□□□□□ -1.96
UBP3	YER151C	AI4	P03878	556 aa		2.79	□□□□□ -1.96
UBP3	YER151C	MRF1	P30775	413 aa	Predicted RBP	2.79	□□□□□ -1.96
UBP3	YER151C	BRE2	P43132	505 aa		2.78	□□□□□ -1.96
UBP3	YER151C	DPL1	Q05567	589 aa		2.78	□□□□□ -1.96
UBP3	YER151C	SAS4	Q04003	481 aa		2.77	□□□□□ -1.97
UBP3	YER151C	ISU2	Q12056	156 aa		2.76	□□□□□ -1.97
UBP3	YER151C	THO2	P53552	1597 aa	Known RBP	2.76	□□□□□ -1.97
UBP3	YER151C	ERG12	P07277	443 aa		2.76	□□□□□ -1.97
UBP3	YER151C	RPP1B	P10622	106 aa	Known RBP	2.75	□□□□□ -1.97
UBP3	YER151C	MAK11	P20484	414 aa	Known RBP	2.74	□□□□□ -1.97
UBP3	YER151C	EDS1	P38073	919 aa		2.73	□□□□□ -1.97
UBP3	YER151C	COQ8	P27697	501 aa		2.72	□□□□□ -1.97
UBP3	YER151C	SLI15	P38283	698 aa		2.7	□□□□□ -1.98
UBP3	YER151C	SOL3	P38858	249 aa		2.7	□□□□□ -1.98
UBP3	YER151C	ILV3	P39522	585 aa	Known RBP	2.7	□□□□□ -1.98
UBP3	YER151C	PEX21	P50091	288 aa		2.7	□□□□□ -1.98
UBP3	YER151C	YGR273C	P53329	174 aa		2.7	□□□□□ -1.98
UBP3	YER151C	YPR015C	Q12531	247 aa		2.69	□□□□□ -1.98
UBP3	YER151C	NST1	P53935	1240 aa		2.69	□□□□□ -1.98
UBP3	YER151C	NPL4	P33755	580 aa		2.68	□□□□□ -1.98
UBP3	YER151C	PDR1	P12383	1068 aa		2.67	□□□□□ -1.98
UBP3	YER151C	SPT16	P32558	1035 aa	Known RBP	2.66	□□□□□ -1.98
UBP3	YER151C	PRT1	P06103	763 aa	Known RBP	2.66	□□□□□ -1.98
UBP3	YER151C	FRK1	Q03002	865 aa	Predicted RBP	2.66	□□□□□ -1.98
UBP3	YER151C	CDC73	Q06697	393 aa		2.66	□□□□□ -1.98
UBP3	YER151C	MTC5	Q03897	1148 aa		2.65	□□□□□ -1.98
UBP3	YER151C	MET22	P32179	357 aa		2.64	□□□□□ -1.99
UBP3	YER151C	YDR444W	Q04093	687 aa		2.64	□□□□□ -1.99
UBP3	YER151C	PAT1	P25644	796 aa	Known RBP	2.64	□□□□□ -1.99
UBP3	YER151C	AIR1	P40507	360 aa	Known RBP	2.64	□□□□□ -1.99
UBP3	YER151C	RAM1	P22007	431 aa		2.63	□□□□□ -1.99
UBP3	YER151C	RAM2	P29703	316 aa		2.63	□□□□□ -1.99
UBP3	YER151C	SPT6	P23615	1451 aa	Known RBP	2.63	□□□□□ -1.99
UBP3	YER151C	HAP1	P0CE41	1502 aa		2.63	□□□□□ -1.99
UBP3	YER151C	CDC4	P07834	779 aa		2.62	□□□□□ -1.99
UBP3	YER151C	GCD11	P32481	527 aa	Known RBP	2.62	□□□□□ -1.99
UBP3	YER151C	HST3	P53687	447 aa		2.62	□□□□□ -1.99
UBP3	YER151C	ENV9	Q08651	330 aa		2.62	□□□□□ -1.99
UBP3	YER151C	KIC1	P38692	1080 aa		2.62	□□□□□ -1.99
UBP3	YER151C	SIN3	P22579	1536 aa		2.62	□□□□□ -1.99
UBP3	YER151C	KEX1	P09620	729 aa		2.62	□□□□□ -1.99
UBP3	YER151C	YRR1	Q12172	810 aa		2.62	□□□□□ -1.99
UBP3	YER151C	NOP53	Q12080	455 aa	Known RBP	2.61	□□□□□ -1.99
UBP3	YER151C	PEP1	P32319	1579 aa		2.61	□□□□□ -1.99
UBP3	YER151C	IFH1	P39520	1085 aa		2.61	□□□□□ -1.99
UBP3	YER151C	SDH2	P21801	266 aa		2.6	□□□□□ -1.99
UBP3	YER151C	RAD54	P32863	898 aa		2.6	□□□□□ -1.99
UBP3	YER151C	CLA4	P48562	842 aa		2.59	□□□□□ -1.99
UBP3	YER151C	CST6	P40535	587 aa		2.58	□□□□□ -2
UBP3	YER151C	BUD20	Q08004	166 aa	Predicted RBP	2.58	□□□□□ -2
UBP3	YER151C	VHR2	P40041	505 aa		2.57	□□□□□ -2
UBP3	YER151C	MYO2	P19524	1574 aa	Known RBP	2.57	□□□□□ -2
UBP3	YER151C	IRC20	Q06554	1556 aa		2.57	□□□□□ -2
UBP3	YER151C	ASH1	P34233	588 aa		2.56	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 19.6 ms