RNA–Protein interactions for RNA: ENST00000590506.1

NEDD4L-229, Transcript of neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase, humanhuman

TSL 2

Gene NEDD4L, Length 2,743 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4L-229ENST00000590506 CLIP1P30622 1438 aa10.74□□□□□ -0.69
NEDD4L-229ENST00000590506 CCER2I3L3R5 266 aa10.73□□□□□ -0.69
NEDD4L-229ENST00000590506 VPS8Q8N3P4 1428 aa10.73□□□□□ -0.69
NEDD4L-229ENST00000590506 ANP32CO43423 234 aa10.72□□□□□ -0.69
NEDD4L-229ENST00000590506 PPP1R15AO75807 674 aaPredicted RBP10.72□□□□□ -0.69
NEDD4L-229ENST00000590506 RANGAP1P46060 587 aaPredicted RBP10.71□□□□□ -0.7
NEDD4L-229ENST00000590506 HIRIP3Q9BW71 556 aaPredicted RBP10.71□□□□□ -0.7
NEDD4L-229ENST00000590506 PPP4R2Q9NY27 417 aa10.7□□□□□ -0.7
NEDD4L-229ENST00000590506 B4GALNT3Q6L9W6 998 aa10.69□□□□□ -0.7
NEDD4L-229ENST00000590506 TOP2AP11388 1531 aaKnown RBP10.68□□□□□ -0.7
NEDD4L-229ENST00000590506 HNRNPUQ00839 825 aaKnown RBP eCLIP10.68□□□□□ -0.7
NEDD4L-229ENST00000590506 EIF5BO60841 1220 aaKnown RBP10.68□□□□□ -0.7
NEDD4L-229ENST00000590506 CEP164Q9UPV0 1460 aa10.67□□□□□ -0.7
NEDD4L-229ENST00000590506 WDR97A6NE52 1622 aa10.66□□□□□ -0.7
NEDD4L-229ENST00000590506 SMARCA2P51531 1590 aa10.65□□□□□ -0.7
NEDD4L-229ENST00000590506 TIMELESSQ9UNS1 1208 aa10.64□□□□□ -0.71
NEDD4L-229ENST00000590506 ZBTB47Q9UFB7 747 aaPredicted RBP10.64□□□□□ -0.71
NEDD4L-229ENST00000590506 IPO9Q96P70 1041 aaKnown RBP10.63□□□□□ -0.71
NEDD4L-229ENST00000590506 ANP32AP39687 249 aaKnown RBP10.63□□□□□ -0.71
NEDD4L-229ENST00000590506 TAOK2Q9UL54 1235 aa10.63□□□□□ -0.71
NEDD4L-229ENST00000590506 PKNOX2Q96KN3 472 aa10.61□□□□□ -0.71
NEDD4L-229ENST00000590506 SIN3AQ96ST3 1273 aa10.61□□□□□ -0.71
NEDD4L-229ENST00000590506 MAPKBP1O60336 1514 aa10.61□□□□□ -0.71
NEDD4L-229ENST00000590506 WASHC2AQ641Q2 1341 aa10.6□□□□□ -0.71
NEDD4L-229ENST00000590506 KANK4Q5T7N3 995 aaPredicted RBP10.6□□□□□ -0.71
NEDD4L-229ENST00000590506 KIF21BO75037 1637 aa10.6□□□□□ -0.71
NEDD4L-229ENST00000590506 BRPF3Q9ULD4 1205 aa10.58□□□□□ -0.72
NEDD4L-229ENST00000590506 CUX2O14529 1486 aa10.58□□□□□ -0.72
NEDD4L-229ENST00000590506 RAPGEF2Q9Y4G8 1499 aa10.57□□□□□ -0.72
NEDD4L-229ENST00000590506 LAS1LQ9Y4W2 734 aaKnown RBP10.57□□□□□ -0.72
NEDD4L-229ENST00000590506 RAB3GAP2Q9H2M9 1393 aa10.56□□□□□ -0.72
NEDD4L-229ENST00000590506 NEFMP07197 916 aa10.56□□□□□ -0.72
NEDD4L-229ENST00000590506 BAZ1BQ9UIG0 1483 aaKnown RBP10.56□□□□□ -0.72
NEDD4L-229ENST00000590506 RRBP1Q9P2E9 1410 aaKnown RBP10.56□□□□□ -0.72
NEDD4L-229ENST00000590506 C11orf95C9JLR9 678 aaPredicted RBP10.56□□□□□ -0.72
NEDD4L-229ENST00000590506 SMARCA4P51532 1647 aa10.55□□□□□ -0.72
NEDD4L-229ENST00000590506 WASHC2CQ9Y4E1 1318 aa10.54□□□□□ -0.72
NEDD4L-229ENST00000590506 CCNB3Q8WWL7 1395 aa10.52□□□□□ -0.73
NEDD4L-229ENST00000590506 NPM2Q86SE8 214 aaKnown RBP10.51□□□□□ -0.73
NEDD4L-229ENST00000590506 SYNJ1O43426 1573 aa10.51□□□□□ -0.73
NEDD4L-229ENST00000590506 TULP1O00294 542 aaPredicted RBP10.49□□□□□ -0.73
NEDD4L-229ENST00000590506 TPRNQ4KMQ1 711 aa10.49□□□□□ -0.73
NEDD4L-229ENST00000590506 USP35Q9P2H5 1018 aa10.49□□□□□ -0.73
NEDD4L-229ENST00000590506 CCDC184Q52MB2 194 aa10.48□□□□□ -0.73
NEDD4L-229ENST00000590506 PPP6R1Q9UPN7 881 aa10.47□□□□□ -0.73
NEDD4L-229ENST00000590506 ARAP1Q96P48 1450 aa10.46□□□□□ -0.73
NEDD4L-229ENST00000590506 PLCB2Q00722 1185 aa10.46□□□□□ -0.73
NEDD4L-229ENST00000590506 ARXQ96QS3 562 aa10.46□□□□□ -0.73
NEDD4L-229ENST00000590506 SETD5Q9C0A6 1442 aa10.46□□□□□ -0.74
NEDD4L-229ENST00000590506 FAM9BQ8IZU0 186 aa10.46□□□□□ -0.74
NEDD4L-229ENST00000590506 RSPH6AQ9H0K4 717 aa10.45□□□□□ -0.74
NEDD4L-229ENST00000590506 GSE1Q14687 1217 aa10.44□□□□□ -0.74
NEDD4L-229ENST00000590506 PPM1GO15355 546 aaPredicted RBP10.43□□□□□ -0.74
NEDD4L-229ENST00000590506 NPM3O75607 178 aaKnown RBP10.42□□□□□ -0.74
NEDD4L-229ENST00000590506 SENP3Q9H4L4 574 aaPredicted RBP10.42□□□□□ -0.74
NEDD4L-229ENST00000590506 AKNAQ7Z591 1439 aa10.41□□□□□ -0.74
NEDD4L-229ENST00000590506 FRAT1Q92837 279 aaPredicted RBP10.41□□□□□ -0.74
NEDD4L-229ENST00000590506 ZBED9Q6R2W3 1325 aa10.41□□□□□ -0.74
NEDD4L-229ENST00000590506 PLEKHG5O94827 1062 aa10.41□□□□□ -0.74
NEDD4L-229ENST00000590506 VSIG10Q8N0Z9 540 aa10.4□□□□□ -0.74
NEDD4L-229ENST00000590506 ZMYND15Q9H091 742 aa10.4□□□□□ -0.75
NEDD4L-229ENST00000590506 GLIPR1L2Q4G1C9 344 aa10.39□□□□□ -0.75
NEDD4L-229ENST00000590506 NCAPD3P42695 1498 aa10.39□□□□□ -0.75
NEDD4L-229ENST00000590506 MRS2Q9HD23 443 aa10.38□□□□□ -0.75
NEDD4L-229ENST00000590506 PEG3Q9GZU2 1588 aa10.38□□□□□ -0.75
NEDD4L-229ENST00000590506 TONSLQ96HA7 1378 aa10.38□□□□□ -0.75
NEDD4L-229ENST00000590506 HAP1P54257 671 aaPredicted RBP10.38□□□□□ -0.75
NEDD4L-229ENST00000590506 FAM43AQ8N2R8 423 aa10.37□□□□□ -0.75
NEDD4L-229ENST00000590506 PDE4AP27815 886 aa10.36□□□□□ -0.75
NEDD4L-229ENST00000590506 FAM50AQ14320 339 aaKnown RBP10.36□□□□□ -0.75
NEDD4L-229ENST00000590506 NFKBIBQ15653 356 aa10.36□□□□□ -0.75
NEDD4L-229ENST00000590506 PODXL2Q9NZ53 605 aa10.36□□□□□ -0.75
NEDD4L-229ENST00000590506 ERICH3Q5RHP9 1530 aa10.35□□□□□ -0.75
NEDD4L-229ENST00000590506 PRXQ9BXM0 1461 aa10.35□□□□□ -0.75
NEDD4L-229ENST00000590506 SMG6Q86US8 1419 aaKnown RBP10.33□□□□□ -0.76
NEDD4L-229ENST00000590506 SENP3-EIF4A1A0A087X0R7 540 aa10.33□□□□□ -0.76
NEDD4L-229ENST00000590506 DCAF11Q8TEB1 546 aa10.33□□□□□ -0.76
NEDD4L-229ENST00000590506 HSPA5P11021 654 aaKnown RBP10.32□□□□□ -0.76
NEDD4L-229ENST00000590506 PRKRIP1Q9H875 184 aaPredicted RBP10.32□□□□□ -0.76
NEDD4L-229ENST00000590506 TCERG1O14776 1098 aaKnown RBP10.32□□□□□ -0.76
NEDD4L-229ENST00000590506 BACH2Q9BYV9 841 aa10.32□□□□□ -0.76
NEDD4L-229ENST00000590506 NUDCQ9Y266 331 aa10.32□□□□□ -0.76
NEDD4L-229ENST00000590506 RNF123Q5XPI4 1314 aa10.31□□□□□ -0.76
NEDD4L-229ENST00000590506 SLC4A3P48751 1232 aa10.31□□□□□ -0.76
NEDD4L-229ENST00000590506 CNTLNQ9NXG0 1405 aa10.31□□□□□ -0.76
NEDD4L-229ENST00000590506 FHAD1B1AJZ9 1412 aa10.3□□□□□ -0.76
NEDD4L-229ENST00000590506 TOP2BQ02880 1626 aa10.3□□□□□ -0.76
NEDD4L-229ENST00000590506 PPP4R3CPQ6ZMV5 832 aa10.3□□□□□ -0.76
NEDD4L-229ENST00000590506 ARHGAP35Q9NRY4 1499 aa10.3□□□□□ -0.76
NEDD4L-229ENST00000590506 PABPN1Q86U42 306 aaKnown RBP eCLIP10.29□□□□□ -0.768e-9■■□□□ 13.9
NEDD4L-229ENST00000590506 DDRGK1Q96HY6 314 aa10.28□□□□□ -0.76
NEDD4L-229ENST00000590506 RRAGDQ9NQL2 400 aaPredicted RBP10.28□□□□□ -0.76
NEDD4L-229ENST00000590506 PHLDB1Q86UU1 1377 aa10.28□□□□□ -0.76
NEDD4L-229ENST00000590506 NCOA2Q15596 1464 aa10.27□□□□□ -0.77
NEDD4L-229ENST00000590506 CNGB1Q14028 1251 aaPredicted RBP10.26□□□□□ -0.77
NEDD4L-229ENST00000590506 EXOC6Q8TAG9 804 aa10.26□□□□□ -0.77
NEDD4L-229ENST00000590506 FRAT2O75474 233 aaPredicted RBP10.25□□□□□ -0.77
NEDD4L-229ENST00000590506 HSP90AA2PQ14568 343 aaPredicted RBP10.25□□□□□ -0.77
NEDD4L-229ENST00000590506 MS4A1P11836 297 aa10.24□□□□□ -0.77
NEDD4L-229ENST00000590506 NAP1L5Q96NT1 182 aaPredicted RBP10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 163.5 ms