RNA–Protein interactions for RNA: ENST00000572365.1

SF3B3-214, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 575 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-214ENST00000572365 HAP1P54257 671 aaPredicted RBP11.99□□□□□ -0.49
SF3B3-214ENST00000572365 RASEFQ8IZ41 740 aa11.98□□□□□ -0.49
SF3B3-214ENST00000572365 RNF25Q96BH1 459 aaPredicted RBP11.98□□□□□ -0.49
SF3B3-214ENST00000572365 CHRDL2Q6WN34 429 aa11.97□□□□□ -0.49
SF3B3-214ENST00000572365 CHGAP10645 457 aaKnown RBP11.96□□□□□ -0.49
SF3B3-214ENST00000572365 CHRM1P11229 460 aaPredicted RBP11.94□□□□□ -0.5
SF3B3-214ENST00000572365 HS6ST3Q8IZP7 471 aa11.93□□□□□ -0.5
SF3B3-214ENST00000572365 RIOK3O14730 519 aaKnown RBP11.92□□□□□ -0.5
SF3B3-214ENST00000572365 PAXIP1Q6ZW49 1069 aaPredicted RBP11.92□□□□□ -0.5
SF3B3-214ENST00000572365 CHADLQ6NUI6 762 aa11.9□□□□□ -0.5
SF3B3-214ENST00000572365 TAOK2Q9UL54 1235 aa11.9□□□□□ -0.5
SF3B3-214ENST00000572365 DNAJC5Q9H3Z4 198 aa11.89□□□□□ -0.51
SF3B3-214ENST00000572365 VSIG10Q8N0Z9 540 aa11.88□□□□□ -0.51
SF3B3-214ENST00000572365 SPRYD3Q8NCJ5 442 aa11.88□□□□□ -0.51
SF3B3-214ENST00000572365 CFAP44Q96MT7 982 aa11.88□□□□□ -0.51
SF3B3-214ENST00000572365 CCDC180Q9P1Z9 1646 aa11.87□□□□□ -0.51
SF3B3-214ENST00000572365 FARP1Q9Y4F1 1045 aaPredicted RBP11.86□□□□□ -0.51
SF3B3-214ENST00000572365 FXR2P51116 673 aaKnown RBP eCLIP11.84□□□□□ -0.512e-7■■■□□ 16.6
SF3B3-214ENST00000572365 VGFO15240 615 aaPredicted RBP11.83□□□□□ -0.52
SF3B3-214ENST00000572365 PRKAR2AP13861 404 aaKnown RBP11.82□□□□□ -0.52
SF3B3-214ENST00000572365 PYGBP11216 843 aa11.81□□□□□ -0.52
SF3B3-214ENST00000572365 SGIP1Q9BQI5 828 aa11.81□□□□□ -0.52
SF3B3-214ENST00000572365 SP7Q8TDD2 431 aaPredicted RBP11.78□□□□□ -0.52
SF3B3-214ENST00000572365 STK25O00506 426 aa11.76□□□□□ -0.53
SF3B3-214ENST00000572365 TSPYL2Q9H2G4 693 aaPredicted RBP11.76□□□□□ -0.53
SF3B3-214ENST00000572365 NKX1-1Q15270 411 aaPredicted RBP11.75□□□□□ -0.53
SF3B3-214ENST00000572365 KDM2AQ9Y2K7 1162 aa11.75□□□□□ -0.53
SF3B3-214ENST00000572365 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.73□□□□□ -0.53
SF3B3-214ENST00000572365 ZFP91Q96JP5 570 aaPredicted RBP11.73□□□□□ -0.53
SF3B3-214ENST00000572365 TSHZ2Q9NRE2 1034 aa11.73□□□□□ -0.53
SF3B3-214ENST00000572365 PIP4P2Q8N4L2 257 aa11.72□□□□□ -0.53
SF3B3-214ENST00000572365 CCDC61Q9Y6R9 512 aa11.71□□□□□ -0.53
SF3B3-214ENST00000572365 BCL11BQ9C0K0 894 aaPredicted RBP11.7□□□□□ -0.54
SF3B3-214ENST00000572365 ZNF467Q7Z7K2 595 aaPredicted RBP11.69□□□□□ -0.54
SF3B3-214ENST00000572365 GTPBP6O43824 516 aaPredicted RBP11.68□□□□□ -0.54
SF3B3-214ENST00000572365 STK24Q9Y6E0 443 aa11.68□□□□□ -0.54
SF3B3-214ENST00000572365 BCANQ96GW7 911 aa11.64□□□□□ -0.55
SF3B3-214ENST00000572365 PAK3O75914 559 aaPredicted RBP11.63□□□□□ -0.55
SF3B3-214ENST00000572365 PDAP1Q13442 181 aaKnown RBP11.62□□□□□ -0.55
SF3B3-214ENST00000572365 ZNF579Q8NAF0 562 aaKnown RBP11.62□□□□□ -0.55
SF3B3-214ENST00000572365 RB1CC1Q8TDY2 1594 aa11.62□□□□□ -0.55
SF3B3-214ENST00000572365 RYDENQ9NUL5 291 aaKnown RBP11.61□□□□□ -0.55
SF3B3-214ENST00000572365 PCDHB8Q9UN66 801 aa11.61□□□□□ -0.55
SF3B3-214ENST00000572365 PCDHB13Q9Y5F0 798 aa11.61□□□□□ -0.55
SF3B3-214ENST00000572365 KIF12Q96FN5 646 aa11.56□□□□□ -0.56
SF3B3-214ENST00000572365 PSEN1P49768 467 aa11.54□□□□□ -0.56
SF3B3-214ENST00000572365 IFNL1Q8IU54 200 aa11.54□□□□□ -0.56
SF3B3-214ENST00000572365 MAP3K13O43283 966 aa11.53□□□□□ -0.56
SF3B3-214ENST00000572365 UNC13AQ9UPW8 1703 aa11.52□□□□□ -0.57
SF3B3-214ENST00000572365 CD44P16070 742 aaKnown RBP11.51□□□□□ -0.57
SF3B3-214ENST00000572365 HAX1O00165 279 aa11.5□□□□□ -0.57
SF3B3-214ENST00000572365 ZRANB1Q9UGI0 708 aa11.5□□□□□ -0.57
SF3B3-214ENST00000572365 MFRPQ9BY79 579 aa11.44□□□□□ -0.58
SF3B3-214ENST00000572365 PHF12Q96QT6 1004 aa11.43□□□□□ -0.58
SF3B3-214ENST00000572365 C19orf67A6NJJ6 358 aa11.41□□□□□ -0.58
SF3B3-214ENST00000572365 EFCAB3Q8N7B9 438 aa11.39□□□□□ -0.59
SF3B3-214ENST00000572365 CABP2Q9NPB3 220 aa11.39□□□□□ -0.59
SF3B3-214ENST00000572365 BICRAQ9NZM4 1560 aa11.38□□□□□ -0.59
SF3B3-214ENST00000572365 SOX12O15370 315 aa11.38□□□□□ -0.59
SF3B3-214ENST00000572365 NACADO15069 1562 aa11.37□□□□□ -0.59
SF3B3-214ENST00000572365 CECR2Q9BXF3 1484 aa11.37□□□□□ -0.59
SF3B3-214ENST00000572365 NLRP6P59044 892 aa11.36□□□□□ -0.59
SF3B3-214ENST00000572365 FBXO22Q8NEZ5 403 aa11.36□□□□□ -0.59
SF3B3-214ENST00000572365 EVX2Q03828 476 aa11.33□□□□□ -0.6
SF3B3-214ENST00000572365 NBR1Q14596 966 aa11.33□□□□□ -0.6
SF3B3-214ENST00000572365 CADPS2Q86UW7 1296 aa11.33□□□□□ -0.6
SF3B3-214ENST00000572365 CC2D2AQ9P2K1 1620 aa11.33□□□□□ -0.6
SF3B3-214ENST00000572365 MS4A3Q96HJ5 214 aa11.32□□□□□ -0.6
SF3B3-214ENST00000572365 PHF8Q9UPP1 1060 aa11.32□□□□□ -0.6
SF3B3-214ENST00000572365 PPP1R37O75864 691 aa11.3□□□□□ -0.6
SF3B3-214ENST00000572365 TMEM106CQ9BVX2 250 aa11.3□□□□□ -0.6
SF3B3-214ENST00000572365 TRPC6Q9Y210 931 aa11.29□□□□□ -0.6
SF3B3-214ENST00000572365 PRKCSHP14314 528 aaPredicted RBP11.27□□□□□ -0.61
SF3B3-214ENST00000572365 TIE1P35590 1138 aa11.25□□□□□ -0.61
SF3B3-214ENST00000572365 P3H3Q8IVL6 736 aa11.25□□□□□ -0.61
SF3B3-214ENST00000572365 GOLGA2Q08379 1002 aa11.24□□□□□ -0.61
SF3B3-214ENST00000572365 MS4A4AQ96JQ5 239 aa11.24□□□□□ -0.61
SF3B3-214ENST00000572365 WDR70Q9NW82 654 aa11.23□□□□□ -0.61
SF3B3-214ENST00000572365 TPRNQ4KMQ1 711 aa11.22□□□□□ -0.61
SF3B3-214ENST00000572365 TTLL13PA6NNM8 815 aa11.21□□□□□ -0.61
SF3B3-214ENST00000572365 CLCN6P51797 869 aa11.2□□□□□ -0.62
SF3B3-214ENST00000572365 MKRN3Q13064 507 aaKnown RBP11.19□□□□□ -0.62
SF3B3-214ENST00000572365 ILDR1Q86SU0 546 aaPredicted RBP11.18□□□□□ -0.62
SF3B3-214ENST00000572365 KCNV2Q8TDN2 545 aa11.18□□□□□ -0.62
SF3B3-214ENST00000572365 BMP2KQ9NSY1 1161 aaPredicted RBP11.18□□□□□ -0.62
SF3B3-214ENST00000572365 GALR2O43603 387 aaPredicted RBP11.17□□□□□ -0.62
SF3B3-214ENST00000572365 NCKAP5LQ9HCH0 1330 aa11.12□□□□□ -0.63
SF3B3-214ENST00000572365 TRIM35Q9UPQ4 493 aa11.12□□□□□ -0.63
SF3B3-214ENST00000572365 EIF4G1Q04637 1599 aaKnown RBP11.11□□□□□ -0.63
SF3B3-214ENST00000572365 CRISPLD2Q9H0B8 497 aa11.1□□□□□ -0.63
SF3B3-214ENST00000572365 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.1□□□□□ -0.635e-10■□□□□ 8.8
SF3B3-214ENST00000572365 PDE4AP27815 886 aa11.09□□□□□ -0.63
SF3B3-214ENST00000572365 MFSD10Q14728 455 aa11.09□□□□□ -0.63
SF3B3-214ENST00000572365 E2F4Q16254 413 aa11.09□□□□□ -0.63
SF3B3-214ENST00000572365 ARHGEF1Q92888 912 aaKnown RBP11.09□□□□□ -0.63
SF3B3-214ENST00000572365 LARP6Q9BRS8 491 aaKnown RBP11.07□□□□□ -0.64
SF3B3-214ENST00000572365 GABBR2O75899 941 aa11.04□□□□□ -0.64
SF3B3-214ENST00000572365 ATN1P54259 1190 aaPredicted RBP11.04□□□□□ -0.64
SF3B3-214ENST00000572365 LHX8Q68G74 356 aa11.04□□□□□ -0.64
SF3B3-214ENST00000572365 ASTLQ6HA08 431 aaPredicted RBP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms