RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 FHAD1B1AJZ9 1412 aa33.5■■■□□ 2.95
VPS53-211ENST00000571805 GTF3C3Q9Y5Q9 886 aa33.48■■■□□ 2.95
VPS53-211ENST00000571805 CFAP43Q8NDM7 1665 aa33.45■■■□□ 2.94
VPS53-211ENST00000571805 PCF11O94913 1555 aaKnown RBP33.43■■■□□ 2.94
VPS53-211ENST00000571805 CUL7Q14999 1698 aa33.43■■■□□ 2.94
VPS53-211ENST00000571805 ITGAEP38570 1179 aa33.41■■■□□ 2.94
VPS53-211ENST00000571805 PHLDB1Q86UU1 1377 aa33.39■■■□□ 2.94
VPS53-211ENST00000571805 LAMC3Q9Y6N6 1575 aa33.37■■■□□ 2.93
VPS53-211ENST00000571805 EFCAB5A4FU69 1503 aa33.37■■■□□ 2.93
VPS53-211ENST00000571805 P3H3Q8IVL6 736 aa33.37■■■□□ 2.93
VPS53-211ENST00000571805 RAB3GAP2Q9H2M9 1393 aa33.36■■■□□ 2.93
VPS53-211ENST00000571805 WDR97A6NE52 1622 aa33.34■■■□□ 2.93
VPS53-211ENST00000571805 FHOD3Q2V2M9 1422 aa33.34■■■□□ 2.93
VPS53-211ENST00000571805 CTTNBP2Q8WZ74 1663 aa33.33■■■□□ 2.93
VPS53-211ENST00000571805 PELP1Q8IZL8 1130 aaKnown RBP33.33■■■□□ 2.93
VPS53-211ENST00000571805 URB2Q14146 1524 aaKnown RBP33.33■■■□□ 2.93
VPS53-211ENST00000571805 YTHDC1Q96MU7 727 aaKnown RBP33.32■■■□□ 2.92
VPS53-211ENST00000571805 FYCO1Q9BQS8 1478 aa33.3■■■□□ 2.92
VPS53-211ENST00000571805 AQRO60306 1485 aaKnown RBP eCLIP33.28■■■□□ 2.927e-8■■■■■ 27.9
VPS53-211ENST00000571805 CASKIN1Q8WXD9 1431 aa33.27■■■□□ 2.92
VPS53-211ENST00000571805 SETD5Q9C0A6 1442 aa33.26■■■□□ 2.92
VPS53-211ENST00000571805 MAPKBP1O60336 1514 aa33.26■■■□□ 2.91
VPS53-211ENST00000571805 ABCA5Q8WWZ7 1642 aa33.2■■■□□ 2.91
VPS53-211ENST00000571805 ATP1B4Q9UN42 357 aaPredicted RBP33.19■■■□□ 2.9
VPS53-211ENST00000571805 FAM50AQ14320 339 aaKnown RBP33.16■■■□□ 2.9
VPS53-211ENST00000571805 DNAJC5BQ9UF47 199 aa33.13■■■□□ 2.89
VPS53-211ENST00000571805 FMN1Q68DA7 1419 aa33.13■■■□□ 2.89
VPS53-211ENST00000571805 TDRD9Q8NDG6 1382 aaKnown RBP33.13■■■□□ 2.89
VPS53-211ENST00000571805 PDS5BQ9NTI5 1447 aa33.11■■■□□ 2.89
VPS53-211ENST00000571805 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.11■■■□□ 2.89
VPS53-211ENST00000571805 SNAPC4Q5SXM2 1469 aa33.11■■■□□ 2.89
VPS53-211ENST00000571805 GAPVD1Q14C86 1478 aa33.1■■■□□ 2.89
VPS53-211ENST00000571805 SAMD9Q5K651 1589 aa33.08■■■□□ 2.89
VPS53-211ENST00000571805 KIF21AQ7Z4S6 1674 aa33.03■■■□□ 2.88
VPS53-211ENST00000571805 LRRIQ1Q96JM4 1722 aa32.97■■■□□ 2.87
VPS53-211ENST00000571805 FGD6Q6ZV73 1430 aa32.97■■■□□ 2.87
VPS53-211ENST00000571805 TARBP1Q13395 1621 aaKnown RBP32.96■■■□□ 2.87
VPS53-211ENST00000571805 GRIN2BQ13224 1484 aa32.92■■■□□ 2.86
VPS53-211ENST00000571805 SIN3AQ96ST3 1273 aa32.91■■■□□ 2.86
VPS53-211ENST00000571805 MTUS2Q5JR59 1369 aa32.89■■■□□ 2.86
VPS53-211ENST00000571805 THOC2Q8NI27 1593 aaKnown RBP32.88■■■□□ 2.85
VPS53-211ENST00000571805 TIMELESSQ9UNS1 1208 aa32.85■■■□□ 2.85
VPS53-211ENST00000571805 NCOA2Q15596 1464 aa32.8■■■□□ 2.84
VPS53-211ENST00000571805 PTPRKQ15262 1439 aa32.79■■■□□ 2.84
VPS53-211ENST00000571805 PBRM1Q86U86 1689 aa32.77■■■□□ 2.84
VPS53-211ENST00000571805 SUPT6HQ7KZ85 1726 aaKnown RBP32.77■■■□□ 2.84
VPS53-211ENST00000571805 MYOM3Q5VTT5 1437 aa32.76■■■□□ 2.84
VPS53-211ENST00000571805 EHBP1L1Q8N3D4 1523 aa32.76■■■□□ 2.83
VPS53-211ENST00000571805 HFM1A2PYH4 1435 aa32.75■■■□□ 2.83
VPS53-211ENST00000571805 CCDC18Q5T9S5 1454 aa32.72■■■□□ 2.83
VPS53-211ENST00000571805 PTPN23Q9H3S7 1636 aa32.71■■■□□ 2.83
VPS53-211ENST00000571805 ARHGEF11O15085 1522 aa32.7■■■□□ 2.83
VPS53-211ENST00000571805 PPP1R15AO75807 674 aaPredicted RBP32.69■■■□□ 2.82
VPS53-211ENST00000571805 MAGI3Q5TCQ9 1506 aa32.68■■■□□ 2.82
VPS53-211ENST00000571805 UGGT2Q9NYU1 1516 aa32.68■■■□□ 2.82
VPS53-211ENST00000571805 ADAMTS12P58397 1594 aa32.66■■■□□ 2.82
VPS53-211ENST00000571805 UACAQ9BZF9 1416 aa32.66■■■□□ 2.82
VPS53-211ENST00000571805 NAIPQ13075 1403 aa32.65■■■□□ 2.82
VPS53-211ENST00000571805 IQGAP2Q13576 1575 aa32.65■■■□□ 2.82
VPS53-211ENST00000571805 MRC2Q9UBG0 1479 aa32.62■■■□□ 2.81
VPS53-211ENST00000571805 HECW1Q76N89 1606 aa32.6■■■□□ 2.81
VPS53-211ENST00000571805 TCOF1Q13428 1488 aaKnown RBP32.55■■■□□ 2.8
VPS53-211ENST00000571805 DDX10Q13206 875 aaKnown RBP32.54■■■□□ 2.8
VPS53-211ENST00000571805 EPRSP07814 1512 aaKnown RBP32.54■■■□□ 2.8
VPS53-211ENST00000571805 KCNH8Q96L42 1107 aa32.51■■■□□ 2.8
VPS53-211ENST00000571805 TONSLQ96HA7 1378 aa32.5■■■□□ 2.79
VPS53-211ENST00000571805 WDR62O43379 1518 aa32.48■■■□□ 2.79
VPS53-211ENST00000571805 CDK13Q14004 1512 aaKnown RBP32.44■■■□□ 2.78
VPS53-211ENST00000571805 IFT140Q96RY7 1462 aa32.44■■■□□ 2.78
VPS53-211ENST00000571805 GCC2Q8IWJ2 1684 aa32.43■■■□□ 2.78
VPS53-211ENST00000571805 ZNF608Q9ULD9 1512 aaPredicted RBP32.42■■■□□ 2.78
VPS53-211ENST00000571805 HIRIP3Q9BW71 556 aaPredicted RBP32.42■■■□□ 2.78
VPS53-211ENST00000571805 MIA2Q96PC5 1412 aa32.4■■■□□ 2.78
VPS53-211ENST00000571805 AKNAQ7Z591 1439 aa32.39■■■□□ 2.78
VPS53-211ENST00000571805 KDM5BQ9UGL1 1544 aa32.38■■■□□ 2.77
VPS53-211ENST00000571805 RRP7BPQ9NSQ0 103 aa32.37■■■□□ 2.77
VPS53-211ENST00000571805 SUPT16HQ9Y5B9 1047 aaKnown RBP32.36■■■□□ 2.77
VPS53-211ENST00000571805 CHIC2Q9UKJ5 165 aa32.34■■■□□ 2.77
VPS53-211ENST00000571805 KIAA0586Q9BVV6 1533 aa32.34■■■□□ 2.77
VPS53-211ENST00000571805 DENND4BO75064 1496 aaPredicted RBP32.33■■■□□ 2.77
VPS53-211ENST00000571805 DISP1Q96F81 1524 aa32.32■■■□□ 2.76
VPS53-211ENST00000571805 KDM6BO15054 1643 aa32.31■■■□□ 2.76
VPS53-211ENST00000571805 KIAA0556O60303 1618 aa32.3■■■□□ 2.76
VPS53-211ENST00000571805 ARID3CA6NKF2 412 aa32.26■■■□□ 2.75
VPS53-211ENST00000571805 CCER2I3L3R5 266 aa32.24■■■□□ 2.75
VPS53-211ENST00000571805 GRIN2AQ12879 1464 aa32.22■■■□□ 2.75
VPS53-211ENST00000571805 EIF4G3O43432 1585 aaKnown RBP32.22■■■□□ 2.75
VPS53-211ENST00000571805 NUP153P49790 1475 aaKnown RBP32.21■■■□□ 2.75
VPS53-211ENST00000571805 ANP32CO43423 234 aa32.19■■■□□ 2.74
VPS53-211ENST00000571805 TRIM52Q96A61 297 aa32.19■■■□□ 2.74
VPS53-211ENST00000571805 RAPGEF6Q8TEU7 1601 aa32.18■■■□□ 2.74
VPS53-211ENST00000571805 MPHOSPH9Q99550 1183 aa32.16■■■□□ 2.74
VPS53-211ENST00000571805 DAPK1P53355 1430 aa32.15■■■□□ 2.74
VPS53-211ENST00000571805 ROCK1Q13464 1354 aa32.14■■■□□ 2.74
VPS53-211ENST00000571805 DNMT1P26358 1616 aaKnown RBP32.13■■■□□ 2.73
VPS53-211ENST00000571805 ABCC5O15440 1437 aa32.11■■■□□ 2.73
VPS53-211ENST00000571805 MAGI1Q96QZ7 1491 aaPredicted RBP32.06■■■□□ 2.72
VPS53-211ENST00000571805 ZNF644Q9H582 1327 aaPredicted RBP32.05■■■□□ 2.72
VPS53-211ENST00000571805 CDK11AQ9UQ88 783 aaPredicted RBP32.04■■■□□ 2.72
VPS53-211ENST00000571805 CEP170Q5SW79 1584 aa32.02■■■□□ 2.72
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms