RNA–Protein interactions for RNA: ENST00000566510.5

CDH1-209, Transcript of cadherin 1, humanhuman

TSL 5

Gene CDH1, Length 2,661 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-209ENST00000566510 SETD5Q9C0A6 1442 aa20.49■□□□□ 0.87
CDH1-209ENST00000566510 SIN3AQ96ST3 1273 aa20.47■□□□□ 0.87
CDH1-209ENST00000566510 MAPKBP1O60336 1514 aa20.45■□□□□ 0.87
CDH1-209ENST00000566510 FHAD1B1AJZ9 1412 aa20.45■□□□□ 0.86
CDH1-209ENST00000566510 MAP3K1Q13233 1512 aa20.45■□□□□ 0.86
CDH1-209ENST00000566510 SUPT16HQ9Y5B9 1047 aaKnown RBP20.43■□□□□ 0.86
CDH1-209ENST00000566510 KCNH8Q96L42 1107 aa20.42■□□□□ 0.86
CDH1-209ENST00000566510 FHOD3Q2V2M9 1422 aa20.4■□□□□ 0.86
CDH1-209ENST00000566510 FANCD2Q9BXW9 1451 aa20.4■□□□□ 0.86
CDH1-209ENST00000566510 PCF11O94913 1555 aaKnown RBP20.4■□□□□ 0.86
CDH1-209ENST00000566510 DDX10Q13206 875 aaKnown RBP20.39■□□□□ 0.85
CDH1-209ENST00000566510 RAD54L2Q9Y4B4 1467 aa20.38■□□□□ 0.85
CDH1-209ENST00000566510 WDR97A6NE52 1622 aa20.35■□□□□ 0.85
CDH1-209ENST00000566510 HIRIP3Q9BW71 556 aaPredicted RBP20.35■□□□□ 0.85
CDH1-209ENST00000566510 CC2D2AQ9P2K1 1620 aa20.34■□□□□ 0.85
CDH1-209ENST00000566510 CFAP43Q8NDM7 1665 aa20.34■□□□□ 0.85
CDH1-209ENST00000566510 MYT1Q01538 1121 aa20.31■□□□□ 0.84
CDH1-209ENST00000566510 POLA1P09884 1462 aaPredicted RBP20.27■□□□□ 0.84
CDH1-209ENST00000566510 FYCO1Q9BQS8 1478 aa20.27■□□□□ 0.83
CDH1-209ENST00000566510 DNMBPQ6XZF7 1577 aa20.26■□□□□ 0.83
CDH1-209ENST00000566510 TOPBP1Q92547 1522 aa20.26■□□□□ 0.83
CDH1-209ENST00000566510 NESP48681 1621 aa20.25■□□□□ 0.83
CDH1-209ENST00000566510 ABCA10Q8WWZ4 1543 aa20.25■□□□□ 0.83
CDH1-209ENST00000566510 CASKIN1Q8WXD9 1431 aa20.25■□□□□ 0.83
CDH1-209ENST00000566510 EFCAB5A4FU69 1503 aa20.22■□□□□ 0.83
CDH1-209ENST00000566510 PPP1R15AO75807 674 aaPredicted RBP20.22■□□□□ 0.83
CDH1-209ENST00000566510 MTUS2Q5JR59 1369 aa20.22■□□□□ 0.83
CDH1-209ENST00000566510 TIMELESSQ9UNS1 1208 aa20.21■□□□□ 0.83
CDH1-209ENST00000566510 BCANQ96GW7 911 aa20.2■□□□□ 0.82
CDH1-209ENST00000566510 CTTNBP2Q8WZ74 1663 aa20.19■□□□□ 0.82
CDH1-209ENST00000566510 FMN1Q68DA7 1419 aa20.19■□□□□ 0.82
CDH1-209ENST00000566510 CUL7Q14999 1698 aa20.18■□□□□ 0.82
CDH1-209ENST00000566510 FGD6Q6ZV73 1430 aa20.18■□□□□ 0.82
CDH1-209ENST00000566510 TONSLQ96HA7 1378 aa20.18■□□□□ 0.82
CDH1-209ENST00000566510 AQRO60306 1485 aaKnown RBP eCLIP20.16■□□□□ 0.82
CDH1-209ENST00000566510 TDRD9Q8NDG6 1382 aaKnown RBP20.16■□□□□ 0.82
CDH1-209ENST00000566510 ANP32CO43423 234 aa20.15■□□□□ 0.82
CDH1-209ENST00000566510 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.15■□□□□ 0.82
CDH1-209ENST00000566510 FKBP8Q14318 412 aa20.13■□□□□ 0.81
CDH1-209ENST00000566510 TRIM52Q96A61 297 aa20.13■□□□□ 0.81
CDH1-209ENST00000566510 CCDC18Q5T9S5 1454 aa20.13■□□□□ 0.81
CDH1-209ENST00000566510 TSHZ2Q9NRE2 1034 aa20.1■□□□□ 0.81
CDH1-209ENST00000566510 SNAPC4Q5SXM2 1469 aa20.09■□□□□ 0.81
CDH1-209ENST00000566510 PTPRKQ15262 1439 aa20.09■□□□□ 0.81
CDH1-209ENST00000566510 URB2Q14146 1524 aaKnown RBP20.06■□□□□ 0.8
CDH1-209ENST00000566510 UACAQ9BZF9 1416 aa20.05■□□□□ 0.8
CDH1-209ENST00000566510 NCOA2Q15596 1464 aa20.05■□□□□ 0.8
CDH1-209ENST00000566510 HFM1A2PYH4 1435 aa20.05■□□□□ 0.8
CDH1-209ENST00000566510 CHIC2Q9UKJ5 165 aa20.05■□□□□ 0.8
CDH1-209ENST00000566510 NEFLP07196 543 aa20.04■□□□□ 0.8
CDH1-209ENST00000566510 CCER2I3L3R5 266 aa20.04■□□□□ 0.8
CDH1-209ENST00000566510 GAPVD1Q14C86 1478 aa20.04■□□□□ 0.8
CDH1-209ENST00000566510 RRP7BPQ9NSQ0 103 aa20.03■□□□□ 0.8
CDH1-209ENST00000566510 LRRIQ1Q96JM4 1722 aa20.03■□□□□ 0.8
CDH1-209ENST00000566510 PTPN23Q9H3S7 1636 aa20.03■□□□□ 0.8
CDH1-209ENST00000566510 MYOM3Q5VTT5 1437 aa20.02■□□□□ 0.8
CDH1-209ENST00000566510 NAIPQ13075 1403 aa20.01■□□□□ 0.79
CDH1-209ENST00000566510 SAMD9Q5K651 1589 aa19.99■□□□□ 0.79
CDH1-209ENST00000566510 SUPT6HQ7KZ85 1726 aaKnown RBP19.99■□□□□ 0.79
CDH1-209ENST00000566510 ARID3CA6NKF2 412 aa19.99■□□□□ 0.79
CDH1-209ENST00000566510 GRIN2BQ13224 1484 aa19.97■□□□□ 0.79
CDH1-209ENST00000566510 LAMC3Q9Y6N6 1575 aa19.97■□□□□ 0.79
CDH1-209ENST00000566510 ABCA5Q8WWZ7 1642 aa19.97■□□□□ 0.79
CDH1-209ENST00000566510 EHBP1L1Q8N3D4 1523 aa19.93■□□□□ 0.78
CDH1-209ENST00000566510 PDS5BQ9NTI5 1447 aa19.92■□□□□ 0.78
CDH1-209ENST00000566510 DNAJC5BQ9UF47 199 aa19.91■□□□□ 0.78
CDH1-209ENST00000566510 MAGI3Q5TCQ9 1506 aa19.89■□□□□ 0.77
CDH1-209ENST00000566510 THOC2Q8NI27 1593 aaKnown RBP19.88■□□□□ 0.77
CDH1-209ENST00000566510 UGGT2Q9NYU1 1516 aa19.88■□□□□ 0.77
CDH1-209ENST00000566510 HNRNPUQ00839 825 aaKnown RBP eCLIP19.87■□□□□ 0.77
CDH1-209ENST00000566510 HSPA5P11021 654 aaKnown RBP19.87■□□□□ 0.77
CDH1-209ENST00000566510 FOXD1Q16676 465 aa19.85■□□□□ 0.77
CDH1-209ENST00000566510 KIF21AQ7Z4S6 1674 aa19.84■□□□□ 0.77
CDH1-209ENST00000566510 WASHC2AQ641Q2 1341 aa19.82■□□□□ 0.76
CDH1-209ENST00000566510 EIF4G2P78344 907 aaKnown RBP eCLIP19.82■□□□□ 0.76
CDH1-209ENST00000566510 MPHOSPH9Q99550 1183 aa19.82■□□□□ 0.76
CDH1-209ENST00000566510 KDM5BQ9UGL1 1544 aa19.81■□□□□ 0.76
CDH1-209ENST00000566510 HECW1Q76N89 1606 aa19.8■□□□□ 0.76
CDH1-209ENST00000566510 CDK13Q14004 1512 aaKnown RBP19.8■□□□□ 0.76
CDH1-209ENST00000566510 ARHGEF11O15085 1522 aa19.8■□□□□ 0.76
CDH1-209ENST00000566510 EPRSP07814 1512 aaKnown RBP19.79■□□□□ 0.76
CDH1-209ENST00000566510 KDM6BO15054 1643 aa19.79■□□□□ 0.76
CDH1-209ENST00000566510 IRX6P78412 446 aaPredicted RBP19.78■□□□□ 0.76
CDH1-209ENST00000566510 L3MBTL2Q969R5 705 aa19.78■□□□□ 0.76
CDH1-209ENST00000566510 TARBP1Q13395 1621 aaKnown RBP19.78■□□□□ 0.76
CDH1-209ENST00000566510 IQGAP2Q13576 1575 aa19.77■□□□□ 0.75
CDH1-209ENST00000566510 ANP32EQ9BTT0 268 aa19.77■□□□□ 0.75
CDH1-209ENST00000566510 TCOF1Q13428 1488 aaKnown RBP19.76■□□□□ 0.75
CDH1-209ENST00000566510 GCC2Q8IWJ2 1684 aa19.76■□□□□ 0.75
CDH1-209ENST00000566510 DENND4BO75064 1496 aaPredicted RBP19.76■□□□□ 0.75
CDH1-209ENST00000566510 RBM19Q9Y4C8 960 aaKnown RBP19.75■□□□□ 0.75
CDH1-209ENST00000566510 PBRM1Q86U86 1689 aa19.74■□□□□ 0.75
CDH1-209ENST00000566510 MIA2Q96PC5 1412 aa19.71■□□□□ 0.75
CDH1-209ENST00000566510 C11orf95C9JLR9 678 aaPredicted RBP19.69■□□□□ 0.74
CDH1-209ENST00000566510 CCDC184Q52MB2 194 aa19.69■□□□□ 0.74
CDH1-209ENST00000566510 FAM9BQ8IZU0 186 aa19.69■□□□□ 0.74
CDH1-209ENST00000566510 ZNF644Q9H582 1327 aaPredicted RBP19.69■□□□□ 0.74
CDH1-209ENST00000566510 AKNAQ7Z591 1439 aa19.68■□□□□ 0.74
CDH1-209ENST00000566510 SLC4A1APQ9BWU0 796 aaKnown RBP19.68■□□□□ 0.74
CDH1-209ENST00000566510 WDR62O43379 1518 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms