RNA–Protein interactions for RNA: ENST00000563790.5

HDGFL3-204, Transcript of HDGF like 3, humanhuman

TSL 3

Gene HDGFL3, Length 934 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-204ENST00000563790 SOGA1O94964 1423 aa21.76■■□□□ 1.07
HDGFL3-204ENST00000563790 TOP2AP11388 1531 aaKnown RBP21.74■■□□□ 1.07
HDGFL3-204ENST00000563790 PPRC1Q5VV67 1664 aaKnown RBP21.71■■□□□ 1.07
HDGFL3-204ENST00000563790 NPM1P06748 294 aaKnown RBP eCLIP21.64■■□□□ 1.05
HDGFL3-204ENST00000563790 ADCY10Q96PN6 1610 aa21.62■■□□□ 1.05
HDGFL3-204ENST00000563790 NUP160Q12769 1436 aa21.59■■□□□ 1.05
HDGFL3-204ENST00000563790 CERKQ8TCT0 537 aa21.59■■□□□ 1.05
HDGFL3-204ENST00000563790 GRIN2AQ12879 1464 aa21.58■■□□□ 1.05
HDGFL3-204ENST00000563790 COL17A1Q9UMD9 1497 aaPredicted RBP21.55■■□□□ 1.04
HDGFL3-204ENST00000563790 FGD5Q6ZNL6 1462 aa21.53■■□□□ 1.04
HDGFL3-204ENST00000563790 PCF11O94913 1555 aaKnown RBP21.48■■□□□ 1.03
HDGFL3-204ENST00000563790 PRG4Q92954 1404 aaPredicted RBP21.46■■□□□ 1.03
HDGFL3-204ENST00000563790 CCDC88BA6NC98 1476 aa21.45■■□□□ 1.02
HDGFL3-204ENST00000563790 GLI2P10070 1586 aa21.44■■□□□ 1.02
HDGFL3-204ENST00000563790 ABCA5Q8WWZ7 1642 aa21.44■■□□□ 1.02
HDGFL3-204ENST00000563790 ADAMTS12P58397 1594 aa21.39■■□□□ 1.01
HDGFL3-204ENST00000563790 PTPRMP28827 1452 aa21.34■■□□□ 1.01
HDGFL3-204ENST00000563790 KIF21BO75037 1637 aa21.34■■□□□ 1.01
HDGFL3-204ENST00000563790 ADAMTSL3P82987 1691 aa21.31■■□□□ 1
HDGFL3-204ENST00000563790 MAP3K4Q9Y6R4 1608 aa21.3■■□□□ 1
HDGFL3-204ENST00000563790 TEX14Q8IWB6 1497 aa21.26■□□□□ 0.99
HDGFL3-204ENST00000563790 JPH4Q96JJ6 628 aa21.26■□□□□ 0.99
HDGFL3-204ENST00000563790 CUX1P39880 1505 aa21.24■□□□□ 0.99
HDGFL3-204ENST00000563790 ABCA10Q8WWZ4 1543 aa21.21■□□□□ 0.99
HDGFL3-204ENST00000563790 PLB1Q6P1J6 1458 aa21.19■□□□□ 0.98
HDGFL3-204ENST00000563790 ASXL2Q76L83 1435 aa21.16■□□□□ 0.98
HDGFL3-204ENST00000563790 FHAD1B1AJZ9 1412 aa21.14■□□□□ 0.98
HDGFL3-204ENST00000563790 RUSC2Q8N2Y8 1516 aa21.14■□□□□ 0.97
HDGFL3-204ENST00000563790 CUL7Q14999 1698 aa21.12■□□□□ 0.97
HDGFL3-204ENST00000563790 KIAA0586Q9BVV6 1533 aa21.12■□□□□ 0.97
HDGFL3-204ENST00000563790 HSPA2P54652 639 aa21.09■□□□□ 0.97
HDGFL3-204ENST00000563790 ABCC2Q92887 1545 aa21.08■□□□□ 0.96
HDGFL3-204ENST00000563790 MADDQ8WXG6 1647 aa21.07■□□□□ 0.96
HDGFL3-204ENST00000563790 BCORL1Q5H9F3 1711 aa21.06■□□□□ 0.96
HDGFL3-204ENST00000563790 EPRSP07814 1512 aaKnown RBP21.05■□□□□ 0.96
HDGFL3-204ENST00000563790 RIMS1Q86UR5 1692 aaKnown RBP20.96■□□□□ 0.95
HDGFL3-204ENST00000563790 ERICH3Q5RHP9 1530 aa20.94■□□□□ 0.94
HDGFL3-204ENST00000563790 MED1Q15648 1581 aaPredicted RBP20.93■□□□□ 0.94
HDGFL3-204ENST00000563790 STRCQ7RTU9 1775 aa20.92■□□□□ 0.94
HDGFL3-204ENST00000563790 IQSEC2Q5JU85 1478 aa20.91■□□□□ 0.94
HDGFL3-204ENST00000563790 CFAP43Q8NDM7 1665 aa20.86■□□□□ 0.93
HDGFL3-204ENST00000563790 PTPRGP23470 1445 aa20.86■□□□□ 0.93
HDGFL3-204ENST00000563790 MAGI3Q5TCQ9 1506 aa20.84■□□□□ 0.93
HDGFL3-204ENST00000563790 UHRF1BP1LA0JNW5 1464 aa20.84■□□□□ 0.93
HDGFL3-204ENST00000563790 LTBP4Q8N2S1 1624 aa20.79■□□□□ 0.92
HDGFL3-204ENST00000563790 DMRT2Q9Y5R5 561 aa20.79■□□□□ 0.92
HDGFL3-204ENST00000563790 ZCCHC11Q5TAX3 1644 aaKnown RBP20.78■□□□□ 0.92
HDGFL3-204ENST00000563790 YEATS2Q9ULM3 1422 aa20.78■□□□□ 0.92
HDGFL3-204ENST00000563790 SRCAPQ6ZRS2 3230 aa20.77■□□□□ 0.92
HDGFL3-204ENST00000563790 ARAP3Q8WWN8 1544 aa20.77■□□□□ 0.92
HDGFL3-204ENST00000563790 KDM5BQ9UGL1 1544 aa20.77■□□□□ 0.92
HDGFL3-204ENST00000563790 PREX1Q8TCU6 1659 aa20.76■□□□□ 0.91
HDGFL3-204ENST00000563790 CD109Q6YHK3 1445 aa20.7■□□□□ 0.9
HDGFL3-204ENST00000563790 WRNQ14191 1432 aaPredicted RBP eCLIP20.7■□□□□ 0.9
HDGFL3-204ENST00000563790 TNIKQ9UKE5 1360 aa20.67■□□□□ 0.9
HDGFL3-204ENST00000563790 WDR7Q9Y4E6 1490 aa20.67■□□□□ 0.9
HDGFL3-204ENST00000563790 UACAQ9BZF9 1416 aa20.66■□□□□ 0.9
HDGFL3-204ENST00000563790 PTPRTO14522 1441 aa20.63■□□□□ 0.89
HDGFL3-204ENST00000563790 ARID4BQ4LE39 1312 aaPredicted RBP20.63■□□□□ 0.89
HDGFL3-204ENST00000563790 SETD1BQ9UPS6 1966 aaKnown RBP20.63■□□□□ 0.89
HDGFL3-204ENST00000563790 TTBK1Q5TCY1 1321 aaPredicted RBP20.62■□□□□ 0.89
HDGFL3-204ENST00000563790 FER1L4A9Z1Z3 1794 aa20.6■□□□□ 0.89
HDGFL3-204ENST00000563790 TTC37Q6PGP7 1564 aa20.59■□□□□ 0.89
HDGFL3-204ENST00000563790 PHF23Q9BUL5 403 aaPredicted RBP20.58■□□□□ 0.89
HDGFL3-204ENST00000563790 PLPPR3Q6T4P5 718 aa20.57■□□□□ 0.88
HDGFL3-204ENST00000563790 CARMIL2Q6F5E8 1435 aa20.55■□□□□ 0.88
HDGFL3-204ENST00000563790 UBAP1LF5GYI3 381 aa20.54■□□□□ 0.88
HDGFL3-204ENST00000563790 BIVM-ERCC5R4GMW8 1640 aa20.51■□□□□ 0.87
HDGFL3-204ENST00000563790 ARHGEF40Q8TER5 1519 aa20.51■□□□□ 0.87
HDGFL3-204ENST00000563790 FRMPD1Q5SYB0 1578 aa20.51■□□□□ 0.87
HDGFL3-204ENST00000563790 PHLDB1Q86UU1 1377 aa20.46■□□□□ 0.87
HDGFL3-204ENST00000563790 HSPA1LP34931 641 aa20.46■□□□□ 0.87
HDGFL3-204ENST00000563790 SIGLEC1Q9BZZ2 1709 aa20.46■□□□□ 0.87
HDGFL3-204ENST00000563790 POGZQ7Z3K3 1410 aa20.44■□□□□ 0.86
HDGFL3-204ENST00000563790 RAPGEF3O95398 923 aa20.42■□□□□ 0.86
HDGFL3-204ENST00000563790 FANCAO15360 1455 aa20.41■□□□□ 0.86
HDGFL3-204ENST00000563790 KCNH8Q96L42 1107 aa20.37■□□□□ 0.85
HDGFL3-204ENST00000563790 UHRF1BP1Q6BDS2 1440 aa20.36■□□□□ 0.85
HDGFL3-204ENST00000563790 DISP1Q96F81 1524 aa20.34■□□□□ 0.85
HDGFL3-204ENST00000563790 SENP3Q9H4L4 574 aaPredicted RBP20.34■□□□□ 0.85
HDGFL3-204ENST00000563790 RICTORQ6R327 1708 aa20.33■□□□□ 0.85
HDGFL3-204ENST00000563790 IQGAP2Q13576 1575 aa20.33■□□□□ 0.84
HDGFL3-204ENST00000563790 NEO1Q92859 1461 aa20.3■□□□□ 0.84
HDGFL3-204ENST00000563790 RGS17Q9UGC6 210 aaPredicted RBP20.29■□□□□ 0.84
HDGFL3-204ENST00000563790 ABCA9Q8IUA7 1624 aa20.28■□□□□ 0.84
HDGFL3-204ENST00000563790 SETD1AO15047 1707 aaKnown RBP20.27■□□□□ 0.83
HDGFL3-204ENST00000563790 ARHGEF12Q9NZN5 1544 aa20.26■□□□□ 0.83
HDGFL3-204ENST00000563790 NCOA1Q15788 1441 aa20.26■□□□□ 0.83
HDGFL3-204ENST00000563790 AKNAQ7Z591 1439 aa20.23■□□□□ 0.83
HDGFL3-204ENST00000563790 SCAF1Q9H7N4 1312 aaKnown RBP20.23■□□□□ 0.83
HDGFL3-204ENST00000563790 ZNF335Q9H4Z2 1342 aaPredicted RBP20.22■□□□□ 0.83
HDGFL3-204ENST00000563790 CEBPAP49715 358 aaPredicted RBP20.19■□□□□ 0.82
HDGFL3-204ENST00000563790 PIP4K2BP78356 416 aa20.19■□□□□ 0.82
HDGFL3-204ENST00000563790 KIAA0556O60303 1618 aa20.19■□□□□ 0.82
HDGFL3-204ENST00000563790 MLECQ14165 292 aa20.17■□□□□ 0.82
HDGFL3-204ENST00000563790 ZMYM4Q5VZL5 1548 aa20.17■□□□□ 0.82
HDGFL3-204ENST00000563790 EFCAB5A4FU69 1503 aa20.16■□□□□ 0.82
HDGFL3-204ENST00000563790 ZFYVE16Q7Z3T8 1539 aa20.15■□□□□ 0.82
HDGFL3-204ENST00000563790 C3P01024 1663 aa20.13■□□□□ 0.81
HDGFL3-204ENST00000563790 FHOD3Q2V2M9 1422 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms