RNA–Protein interactions for RNA: ENST00000559193.5

SPG11-215, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 2,579 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-215ENST00000559193 CFAP43Q8NDM7 1665 aa24.15■■□□□ 1.46
SPG11-215ENST00000559193 PCF11O94913 1555 aaKnown RBP24.14■■□□□ 1.46
SPG11-215ENST00000559193 PHLDB1Q86UU1 1377 aa24.14■■□□□ 1.46
SPG11-215ENST00000559193 FHAD1B1AJZ9 1412 aa24.14■■□□□ 1.46
SPG11-215ENST00000559193 DNMBPQ6XZF7 1577 aa24.11■■□□□ 1.45
SPG11-215ENST00000559193 SETD5Q9C0A6 1442 aa24.09■■□□□ 1.45
SPG11-215ENST00000559193 ABCA10Q8WWZ4 1543 aa24.08■■□□□ 1.45
SPG11-215ENST00000559193 RAD54L2Q9Y4B4 1467 aa24.08■■□□□ 1.44
SPG11-215ENST00000559193 POLA1P09884 1462 aaPredicted RBP24.05■■□□□ 1.44
SPG11-215ENST00000559193 TOPBP1Q92547 1522 aa24.04■■□□□ 1.44
SPG11-215ENST00000559193 P3H3Q8IVL6 736 aa24.03■■□□□ 1.44
SPG11-215ENST00000559193 FHOD3Q2V2M9 1422 aa24.03■■□□□ 1.44
SPG11-215ENST00000559193 EFCAB5A4FU69 1503 aa24.01■■□□□ 1.43
SPG11-215ENST00000559193 FYCO1Q9BQS8 1478 aa24.01■■□□□ 1.43
SPG11-215ENST00000559193 FAM50AQ14320 339 aaKnown RBP23.99■■□□□ 1.43
SPG11-215ENST00000559193 CUL7Q14999 1698 aa23.99■■□□□ 1.43
SPG11-215ENST00000559193 CASKIN1Q8WXD9 1431 aa23.97■■□□□ 1.43
SPG11-215ENST00000559193 AQRO60306 1485 aaKnown RBP eCLIP23.96■■□□□ 1.434e-7■□□□□ 8.6
SPG11-215ENST00000559193 NESP48681 1621 aa23.96■■□□□ 1.43
SPG11-215ENST00000559193 CTTNBP2Q8WZ74 1663 aa23.95■■□□□ 1.42
SPG11-215ENST00000559193 ATP1B4Q9UN42 357 aaPredicted RBP23.93■■□□□ 1.42
SPG11-215ENST00000559193 WDR97A6NE52 1622 aa23.9■■□□□ 1.42
SPG11-215ENST00000559193 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.88■■□□□ 1.41
SPG11-215ENST00000559193 SIN3AQ96ST3 1273 aa23.88■■□□□ 1.41
SPG11-215ENST00000559193 SNAPC4Q5SXM2 1469 aa23.85■■□□□ 1.41
SPG11-215ENST00000559193 URB2Q14146 1524 aaKnown RBP23.84■■□□□ 1.41
SPG11-215ENST00000559193 FMN1Q68DA7 1419 aa23.84■■□□□ 1.41
SPG11-215ENST00000559193 FGD6Q6ZV73 1430 aa23.81■■□□□ 1.4
SPG11-215ENST00000559193 ABCA5Q8WWZ7 1642 aa23.8■■□□□ 1.4
SPG11-215ENST00000559193 LAMC3Q9Y6N6 1575 aa23.79■■□□□ 1.4
SPG11-215ENST00000559193 SUPT16HQ9Y5B9 1047 aaKnown RBP23.79■■□□□ 1.4
SPG11-215ENST00000559193 SAMD9Q5K651 1589 aa23.79■■□□□ 1.4
SPG11-215ENST00000559193 TIMELESSQ9UNS1 1208 aa23.78■■□□□ 1.4
SPG11-215ENST00000559193 KCNH8Q96L42 1107 aa23.76■■□□□ 1.39
SPG11-215ENST00000559193 LRRIQ1Q96JM4 1722 aa23.74■■□□□ 1.39
SPG11-215ENST00000559193 TDRD9Q8NDG6 1382 aaKnown RBP23.73■■□□□ 1.39
SPG11-215ENST00000559193 MTUS2Q5JR59 1369 aa23.72■■□□□ 1.39
SPG11-215ENST00000559193 GAPVD1Q14C86 1478 aa23.7■■□□□ 1.39
SPG11-215ENST00000559193 CCDC18Q5T9S5 1454 aa23.7■■□□□ 1.39
SPG11-215ENST00000559193 PTPRKQ15262 1439 aa23.7■■□□□ 1.38
SPG11-215ENST00000559193 GRIN2BQ13224 1484 aa23.7■■□□□ 1.38
SPG11-215ENST00000559193 DDX10Q13206 875 aaKnown RBP23.7■■□□□ 1.38
SPG11-215ENST00000559193 PPP1R15AO75807 674 aaPredicted RBP23.69■■□□□ 1.38
SPG11-215ENST00000559193 HFM1A2PYH4 1435 aa23.68■■□□□ 1.38
SPG11-215ENST00000559193 THOC2Q8NI27 1593 aaKnown RBP23.67■■□□□ 1.38
SPG11-215ENST00000559193 PTPN23Q9H3S7 1636 aa23.67■■□□□ 1.38
SPG11-215ENST00000559193 NCOA2Q15596 1464 aa23.66■■□□□ 1.38
SPG11-215ENST00000559193 MYOM3Q5VTT5 1437 aa23.64■■□□□ 1.37
SPG11-215ENST00000559193 UACAQ9BZF9 1416 aa23.64■■□□□ 1.37
SPG11-215ENST00000559193 EHBP1L1Q8N3D4 1523 aa23.62■■□□□ 1.37
SPG11-215ENST00000559193 SUPT6HQ7KZ85 1726 aaKnown RBP23.61■■□□□ 1.37
SPG11-215ENST00000559193 PDS5BQ9NTI5 1447 aa23.6■■□□□ 1.37
SPG11-215ENST00000559193 NAIPQ13075 1403 aa23.6■■□□□ 1.37
SPG11-215ENST00000559193 HIRIP3Q9BW71 556 aaPredicted RBP23.59■■□□□ 1.37
SPG11-215ENST00000559193 TONSLQ96HA7 1378 aa23.58■■□□□ 1.37
SPG11-215ENST00000559193 KIF21AQ7Z4S6 1674 aa23.58■■□□□ 1.37
SPG11-215ENST00000559193 ARHGEF11O15085 1522 aa23.57■■□□□ 1.36
SPG11-215ENST00000559193 UGGT2Q9NYU1 1516 aa23.57■■□□□ 1.36
SPG11-215ENST00000559193 MAGI3Q5TCQ9 1506 aa23.56■■□□□ 1.36
SPG11-215ENST00000559193 TARBP1Q13395 1621 aaKnown RBP23.56■■□□□ 1.36
SPG11-215ENST00000559193 MYT1Q01538 1121 aa23.52■■□□□ 1.36
SPG11-215ENST00000559193 KDM5BQ9UGL1 1544 aa23.5■■□□□ 1.35
SPG11-215ENST00000559193 DNAJC5BQ9UF47 199 aa23.49■■□□□ 1.35
SPG11-215ENST00000559193 CCER2I3L3R5 266 aa23.48■■□□□ 1.35
SPG11-215ENST00000559193 TCOF1Q13428 1488 aaKnown RBP23.47■■□□□ 1.35
SPG11-215ENST00000559193 HECW1Q76N89 1606 aa23.47■■□□□ 1.35
SPG11-215ENST00000559193 PBRM1Q86U86 1689 aa23.46■■□□□ 1.35
SPG11-215ENST00000559193 ANP32CO43423 234 aa23.45■■□□□ 1.34
SPG11-215ENST00000559193 GCC2Q8IWJ2 1684 aa23.44■■□□□ 1.34
SPG11-215ENST00000559193 IQGAP2Q13576 1575 aa23.42■■□□□ 1.34
SPG11-215ENST00000559193 EPRSP07814 1512 aaKnown RBP23.41■■□□□ 1.34
SPG11-215ENST00000559193 ADAMTS12P58397 1594 aa23.4■■□□□ 1.34
SPG11-215ENST00000559193 TSHZ2Q9NRE2 1034 aa23.4■■□□□ 1.34
SPG11-215ENST00000559193 DENND4BO75064 1496 aaPredicted RBP23.4■■□□□ 1.34
SPG11-215ENST00000559193 AKNAQ7Z591 1439 aa23.39■■□□□ 1.33
SPG11-215ENST00000559193 RRP7BPQ9NSQ0 103 aa23.39■■□□□ 1.33
SPG11-215ENST00000559193 CDK13Q14004 1512 aaKnown RBP23.37■■□□□ 1.33
SPG11-215ENST00000559193 WDR62O43379 1518 aa23.36■■□□□ 1.33
SPG11-215ENST00000559193 KDM6BO15054 1643 aa23.36■■□□□ 1.33
SPG11-215ENST00000559193 CHIC2Q9UKJ5 165 aa23.36■■□□□ 1.33
SPG11-215ENST00000559193 FKBP8Q14318 412 aa23.34■■□□□ 1.33
SPG11-215ENST00000559193 TRIM52Q96A61 297 aa23.33■■□□□ 1.33
SPG11-215ENST00000559193 MIA2Q96PC5 1412 aa23.33■■□□□ 1.33
SPG11-215ENST00000559193 BCANQ96GW7 911 aa23.32■■□□□ 1.32
SPG11-215ENST00000559193 MRC2Q9UBG0 1479 aa23.27■■□□□ 1.32
SPG11-215ENST00000559193 ARID3CA6NKF2 412 aa23.24■■□□□ 1.31
SPG11-215ENST00000559193 HSPA5P11021 654 aaKnown RBP23.23■■□□□ 1.31
SPG11-215ENST00000559193 WASHC2AQ641Q2 1341 aa23.23■■□□□ 1.31
SPG11-215ENST00000559193 MPHOSPH9Q99550 1183 aa23.23■■□□□ 1.31
SPG11-215ENST00000559193 NEFLP07196 543 aa23.21■■□□□ 1.31
SPG11-215ENST00000559193 KIAA0556O60303 1618 aa23.19■■□□□ 1.3
SPG11-215ENST00000559193 DAPK1P53355 1430 aa23.19■■□□□ 1.3
SPG11-215ENST00000559193 ZNF608Q9ULD9 1512 aaPredicted RBP23.18■■□□□ 1.3
SPG11-215ENST00000559193 DISP1Q96F81 1524 aa23.18■■□□□ 1.3
SPG11-215ENST00000559193 ROCK1Q13464 1354 aa23.17■■□□□ 1.3
SPG11-215ENST00000559193 DNMT1P26358 1616 aaKnown RBP23.16■■□□□ 1.3
SPG11-215ENST00000559193 NUP153P49790 1475 aaKnown RBP23.15■■□□□ 1.3
SPG11-215ENST00000559193 KIAA0586Q9BVV6 1533 aa23.15■■□□□ 1.3
SPG11-215ENST00000559193 EIF4G2P78344 907 aaKnown RBP eCLIP23.15■■□□□ 1.3
SPG11-215ENST00000559193 FOXD1Q16676 465 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms