RNA–Protein interactions for RNA: ENST00000552620.1

CHMP4A-210, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 716 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-210ENST00000552620 NPM1P06748 294 aaKnown RBP eCLIP10.26□□□□□ -0.77
CHMP4A-210ENST00000552620 CHADLQ6NUI6 762 aa10.25□□□□□ -0.77
CHMP4A-210ENST00000552620 VSIG10Q8N0Z9 540 aa10.25□□□□□ -0.77
CHMP4A-210ENST00000552620 PAXIP1Q6ZW49 1069 aaPredicted RBP10.24□□□□□ -0.77
CHMP4A-210ENST00000552620 CFAP44Q96MT7 982 aa10.22□□□□□ -0.77
CHMP4A-210ENST00000552620 SHROOM4Q9ULL8 1493 aa10.22□□□□□ -0.77
CHMP4A-210ENST00000552620 CHGAP10645 457 aaKnown RBP10.21□□□□□ -0.77
CHMP4A-210ENST00000552620 SPRYD3Q8NCJ5 442 aa10.2□□□□□ -0.78
CHMP4A-210ENST00000552620 NUBP1P53384 320 aa10.19□□□□□ -0.78
CHMP4A-210ENST00000552620 HAX1O00165 279 aa10.18□□□□□ -0.78
CHMP4A-210ENST00000552620 DCAF8Q5TAQ9 597 aa10.18□□□□□ -0.78
CHMP4A-210ENST00000552620 TAOK2Q9UL54 1235 aa10.18□□□□□ -0.78
CHMP4A-210ENST00000552620 FAM212AQ96EL1 285 aa10.17□□□□□ -0.78
CHMP4A-210ENST00000552620 CREBZFQ9NS37 354 aa10.17□□□□□ -0.78
CHMP4A-210ENST00000552620 BCANQ96GW7 911 aa10.16□□□□□ -0.78
CHMP4A-210ENST00000552620 HS6ST3Q8IZP7 471 aa10.14□□□□□ -0.79
CHMP4A-210ENST00000552620 FARP1Q9Y4F1 1045 aaPredicted RBP10.14□□□□□ -0.79
CHMP4A-210ENST00000552620 SUPT5HO00267 1087 aaKnown RBP10.1□□□□□ -0.79
CHMP4A-210ENST00000552620 RIOK3O14730 519 aaKnown RBP10.1□□□□□ -0.79
CHMP4A-210ENST00000552620 MNX1P50219 401 aaPredicted RBP10.1□□□□□ -0.79
CHMP4A-210ENST00000552620 C19orf67A6NJJ6 358 aa10.09□□□□□ -0.79
CHMP4A-210ENST00000552620 RNF25Q96BH1 459 aaPredicted RBP10.09□□□□□ -0.79
CHMP4A-210ENST00000552620 DCAF1Q9Y4B6 1507 aa10.07□□□□□ -0.8
CHMP4A-210ENST00000552620 EVX2Q03828 476 aa10.06□□□□□ -0.8
CHMP4A-210ENST00000552620 SP7Q8TDD2 431 aaPredicted RBP10.06□□□□□ -0.8
CHMP4A-210ENST00000552620 KDM2AQ9Y2K7 1162 aa10.06□□□□□ -0.8
CHMP4A-210ENST00000552620 CHRM1P11229 460 aaPredicted RBP10.05□□□□□ -0.8
CHMP4A-210ENST00000552620 DNAJC5Q9H3Z4 198 aa10.05□□□□□ -0.8
CHMP4A-210ENST00000552620 VGFO15240 615 aaPredicted RBP10.04□□□□□ -0.8
CHMP4A-210ENST00000552620 RASEFQ8IZ41 740 aa10.04□□□□□ -0.8
CHMP4A-210ENST00000552620 TSHZ2Q9NRE2 1034 aa10.04□□□□□ -0.8
CHMP4A-210ENST00000552620 STK25O00506 426 aa10□□□□□ -0.81
CHMP4A-210ENST00000552620 CD44P16070 742 aaKnown RBP10□□□□□ -0.81
CHMP4A-210ENST00000552620 SGIP1Q9BQI5 828 aa9.97□□□□□ -0.81
CHMP4A-210ENST00000552620 PYGBP11216 843 aa9.95□□□□□ -0.82
CHMP4A-210ENST00000552620 RYDENQ9NUL5 291 aaKnown RBP9.94□□□□□ -0.82
CHMP4A-210ENST00000552620 NKX1-1Q15270 411 aaPredicted RBP9.93□□□□□ -0.82
CHMP4A-210ENST00000552620 STK24Q9Y6E0 443 aa9.93□□□□□ -0.82
CHMP4A-210ENST00000552620 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.92□□□□□ -0.82
CHMP4A-210ENST00000552620 ZFP91Q96JP5 570 aaPredicted RBP9.92□□□□□ -0.82
CHMP4A-210ENST00000552620 BCL11BQ9C0K0 894 aaPredicted RBP9.91□□□□□ -0.82
CHMP4A-210ENST00000552620 ZRANB1Q9UGI0 708 aa9.91□□□□□ -0.82
CHMP4A-210ENST00000552620 GTPBP6O43824 516 aaPredicted RBP9.9□□□□□ -0.82
CHMP4A-210ENST00000552620 PAK3O75914 559 aaPredicted RBP9.9□□□□□ -0.82
CHMP4A-210ENST00000552620 ZNF467Q7Z7K2 595 aaPredicted RBP9.89□□□□□ -0.83
CHMP4A-210ENST00000552620 TSPYL2Q9H2G4 693 aaPredicted RBP9.89□□□□□ -0.83
CHMP4A-210ENST00000552620 GABBR2O75899 941 aa9.87□□□□□ -0.83
CHMP4A-210ENST00000552620 ZNF579Q8NAF0 562 aaKnown RBP9.86□□□□□ -0.83
CHMP4A-210ENST00000552620 CLCN6P51797 869 aa9.84□□□□□ -0.83
CHMP4A-210ENST00000552620 NBR1Q14596 966 aa9.84□□□□□ -0.83
CHMP4A-210ENST00000552620 PDAP1Q13442 181 aaKnown RBP9.82□□□□□ -0.84
CHMP4A-210ENST00000552620 MYO15BQ96JP2 1530 aa9.81□□□□□ -0.84
CHMP4A-210ENST00000552620 PRKCSHP14314 528 aaPredicted RBP9.8□□□□□ -0.84
CHMP4A-210ENST00000552620 PHF12Q96QT6 1004 aa9.79□□□□□ -0.84
CHMP4A-210ENST00000552620 TPRNQ4KMQ1 711 aa9.78□□□□□ -0.84
CHMP4A-210ENST00000552620 CCDC61Q9Y6R9 512 aa9.77□□□□□ -0.85
CHMP4A-210ENST00000552620 PCDHB8Q9UN66 801 aa9.75□□□□□ -0.85
CHMP4A-210ENST00000552620 PCDHB13Q9Y5F0 798 aa9.75□□□□□ -0.85
CHMP4A-210ENST00000552620 PSEN1P49768 467 aa9.73□□□□□ -0.85
CHMP4A-210ENST00000552620 GALR2O43603 387 aaPredicted RBP9.71□□□□□ -0.86
CHMP4A-210ENST00000552620 HRCP23327 699 aa9.69□□□□□ -0.86
CHMP4A-210ENST00000552620 KIF12Q96FN5 646 aa9.69□□□□□ -0.86
CHMP4A-210ENST00000552620 P3H3Q8IVL6 736 aa9.68□□□□□ -0.86
CHMP4A-210ENST00000552620 ABCC9O60706 1549 aa9.67□□□□□ -0.86
CHMP4A-210ENST00000552620 MS4A3Q96HJ5 214 aa9.67□□□□□ -0.86
CHMP4A-210ENST00000552620 DCBLD2Q96PD2 775 aa9.67□□□□□ -0.86
CHMP4A-210ENST00000552620 IFNL1Q8IU54 200 aa9.66□□□□□ -0.86
CHMP4A-210ENST00000552620 WDR70Q9NW82 654 aa9.66□□□□□ -0.86
CHMP4A-210ENST00000552620 POTEIP0CG38 1075 aa9.65□□□□□ -0.86
CHMP4A-210ENST00000552620 MAP3K13O43283 966 aa9.64□□□□□ -0.87
CHMP4A-210ENST00000552620 MFRPQ9BY79 579 aa9.64□□□□□ -0.87
CHMP4A-210ENST00000552620 RSF1Q96T23 1441 aaPredicted RBP9.63□□□□□ -0.87
CHMP4A-210ENST00000552620 NLRP6P59044 892 aa9.62□□□□□ -0.87
CHMP4A-210ENST00000552620 SOX12O15370 315 aa9.61□□□□□ -0.87
CHMP4A-210ENST00000552620 CABP2Q9NPB3 220 aa9.61□□□□□ -0.87
CHMP4A-210ENST00000552620 NACADO15069 1562 aa9.59□□□□□ -0.87
CHMP4A-210ENST00000552620 EFCAB3Q8N7B9 438 aa9.59□□□□□ -0.87
CHMP4A-210ENST00000552620 CADPS2Q86UW7 1296 aa9.58□□□□□ -0.88
CHMP4A-210ENST00000552620 PCGF6Q9BYE7 350 aa9.58□□□□□ -0.88
CHMP4A-210ENST00000552620 SCRIBQ14160 1630 aa9.57□□□□□ -0.88
CHMP4A-210ENST00000552620 LOC105371045A0A1W2PR82 267 aa9.55□□□□□ -0.88
CHMP4A-210ENST00000552620 FBXO22Q8NEZ5 403 aa9.55□□□□□ -0.88
CHMP4A-210ENST00000552620 RB1CC1Q8TDY2 1594 aa9.54□□□□□ -0.88
CHMP4A-210ENST00000552620 GOLGA2Q08379 1002 aa9.54□□□□□ -0.88
CHMP4A-210ENST00000552620 ASTLQ6HA08 431 aaPredicted RBP9.54□□□□□ -0.88
CHMP4A-210ENST00000552620 PHF8Q9UPP1 1060 aa9.54□□□□□ -0.88
CHMP4A-210ENST00000552620 TRPC6Q9Y210 931 aa9.54□□□□□ -0.88
CHMP4A-210ENST00000552620 ATMINO43313 823 aaPredicted RBP9.53□□□□□ -0.88
CHMP4A-210ENST00000552620 KCNV2Q8TDN2 545 aa9.53□□□□□ -0.88
CHMP4A-210ENST00000552620 PPP1R37O75864 691 aa9.52□□□□□ -0.89
CHMP4A-210ENST00000552620 TIE1P35590 1138 aa9.52□□□□□ -0.89
CHMP4A-210ENST00000552620 TRIM26Q12899 539 aaPredicted RBP9.52□□□□□ -0.89
CHMP4A-210ENST00000552620 BMP2KQ9NSY1 1161 aaPredicted RBP9.51□□□□□ -0.89
CHMP4A-210ENST00000552620 PELP1Q8IZL8 1130 aaKnown RBP9.5□□□□□ -0.89
CHMP4A-210ENST00000552620 ATN1P54259 1190 aaPredicted RBP9.49□□□□□ -0.89
CHMP4A-210ENST00000552620 TMEM106CQ9BVX2 250 aa9.49□□□□□ -0.89
CHMP4A-210ENST00000552620 TULP1O00294 542 aaPredicted RBP9.48□□□□□ -0.89
CHMP4A-210ENST00000552620 TTLL13PA6NNM8 815 aa9.47□□□□□ -0.89
CHMP4A-210ENST00000552620 MKRN3Q13064 507 aaKnown RBP9.47□□□□□ -0.89
CHMP4A-210ENST00000552620 E2F4Q16254 413 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms