RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 SCAF1Q9H7N4 1312 aaKnown RBP8.97□□□□□ -0.97
LIMS1-214ENST00000542845 PBRM1Q86U86 1689 aa8.96□□□□□ -0.98
LIMS1-214ENST00000542845 NPM1P06748 294 aaKnown RBP eCLIP8.93□□□□□ -0.98
LIMS1-214ENST00000542845 WDR97A6NE52 1622 aa8.93□□□□□ -0.98
LIMS1-214ENST00000542845 TSPOAP1O95153 1857 aa8.92□□□□□ -0.98
LIMS1-214ENST00000542845 CEP170Q5SW79 1584 aa8.91□□□□□ -0.98
LIMS1-214ENST00000542845 KDM6BO15054 1643 aa8.91□□□□□ -0.98
LIMS1-214ENST00000542845 CUX1P39880 1505 aa8.89□□□□□ -0.99
LIMS1-214ENST00000542845 GRIN2AQ12879 1464 aa8.86□□□□□ -0.99
LIMS1-214ENST00000542845 ABCC10Q5T3U5 1492 aa8.85□□□□□ -0.99
LIMS1-214ENST00000542845 RNF39Q9H2S5 420 aa8.85□□□□□ -0.99
LIMS1-214ENST00000542845 PRG4Q92954 1404 aaPredicted RBP8.85□□□□□ -0.99
LIMS1-214ENST00000542845 DCAF8L1A6NGE4 600 aa8.84□□□□□ -0.99
LIMS1-214ENST00000542845 JPH4Q96JJ6 628 aa8.83□□□□□ -1
LIMS1-214ENST00000542845 SHROOM2Q13796 1616 aa8.83□□□□□ -1
LIMS1-214ENST00000542845 TTBK1Q5TCY1 1321 aaPredicted RBP8.82□□□□□ -1
LIMS1-214ENST00000542845 DIP2BQ9P265 1576 aa8.82□□□□□ -1
LIMS1-214ENST00000542845 HECW2Q9P2P5 1572 aa8.82□□□□□ -1
LIMS1-214ENST00000542845 ABCA5Q8WWZ7 1642 aa8.82□□□□□ -1
LIMS1-214ENST00000542845 ADGRL1O94910 1474 aa8.82□□□□□ -1
LIMS1-214ENST00000542845 NUP160Q12769 1436 aa8.81□□□□□ -1
LIMS1-214ENST00000542845 FBXO41Q8TF61 875 aa8.8□□□□□ -1
LIMS1-214ENST00000542845 ABCA10Q8WWZ4 1543 aa8.8□□□□□ -1
LIMS1-214ENST00000542845 ADAMTS12P58397 1594 aa8.79□□□□□ -1
LIMS1-214ENST00000542845 MAPKBP1O60336 1514 aa8.78□□□□□ -1
LIMS1-214ENST00000542845 POTEHQ6S545 545 aa8.77□□□□□ -1.01
LIMS1-214ENST00000542845 FHAD1B1AJZ9 1412 aa8.77□□□□□ -1.01
LIMS1-214ENST00000542845 ADCY10Q96PN6 1610 aa8.76□□□□□ -1.01
LIMS1-214ENST00000542845 PPP4R3CPQ6ZMV5 832 aa8.75□□□□□ -1.01
LIMS1-214ENST00000542845 SLC4A1APQ9BWU0 796 aaKnown RBP8.75□□□□□ -1.01
LIMS1-214ENST00000542845 WRNQ14191 1432 aaPredicted RBP eCLIP8.73□□□□□ -1.01
LIMS1-214ENST00000542845 NCBP3Q53F19 620 aaKnown RBP8.7□□□□□ -1.02
LIMS1-214ENST00000542845 LMTK3Q96Q04 1460 aa8.7□□□□□ -1.02
LIMS1-214ENST00000542845 ERICH3Q5RHP9 1530 aa8.69□□□□□ -1.02
LIMS1-214ENST00000542845 PPRC1Q5VV67 1664 aaKnown RBP8.69□□□□□ -1.02
LIMS1-214ENST00000542845 HOXD11P31277 338 aaPredicted RBP8.68□□□□□ -1.02
LIMS1-214ENST00000542845 RUSC2Q8N2Y8 1516 aa8.68□□□□□ -1.02
LIMS1-214ENST00000542845 C1QBPQ07021 282 aaKnown RBP8.67□□□□□ -1.02
LIMS1-214ENST00000542845 COL17A1Q9UMD9 1497 aaPredicted RBP8.67□□□□□ -1.02
LIMS1-214ENST00000542845 PTPRGP23470 1445 aa8.66□□□□□ -1.02
LIMS1-214ENST00000542845 ASXL2Q76L83 1435 aa8.66□□□□□ -1.02
LIMS1-214ENST00000542845 CUL7Q14999 1698 aa8.65□□□□□ -1.03
LIMS1-214ENST00000542845 TOP2BQ02880 1626 aa8.64□□□□□ -1.03
LIMS1-214ENST00000542845 ILDR2Q71H61 639 aa8.63□□□□□ -1.03
LIMS1-214ENST00000542845 PLB1Q6P1J6 1458 aa8.63□□□□□ -1.03
LIMS1-214ENST00000542845 DISP3Q9P2K9 1392 aa8.62□□□□□ -1.03
LIMS1-214ENST00000542845 BIVM-ERCC5R4GMW8 1640 aa8.62□□□□□ -1.03
LIMS1-214ENST00000542845 GLI2P10070 1586 aa8.62□□□□□ -1.03
LIMS1-214ENST00000542845 ABCC2Q92887 1545 aa8.61□□□□□ -1.03
LIMS1-214ENST00000542845 SOCS7O14512 581 aa8.61□□□□□ -1.03
LIMS1-214ENST00000542845 KIAA0586Q9BVV6 1533 aa8.6□□□□□ -1.03
LIMS1-214ENST00000542845 TEX14Q8IWB6 1497 aa8.6□□□□□ -1.03
LIMS1-214ENST00000542845 CSRNP3Q8WYN3 585 aa8.6□□□□□ -1.03
LIMS1-214ENST00000542845 MAP3K4Q9Y6R4 1608 aa8.59□□□□□ -1.03
LIMS1-214ENST00000542845 SUPT5HO00267 1087 aaKnown RBP8.59□□□□□ -1.03
LIMS1-214ENST00000542845 TNIKQ9UKE5 1360 aa8.59□□□□□ -1.03
LIMS1-214ENST00000542845 KIF21BO75037 1637 aa8.58□□□□□ -1.04
LIMS1-214ENST00000542845 CARMIL2Q6F5E8 1435 aa8.58□□□□□ -1.04
LIMS1-214ENST00000542845 KCNH8Q96L42 1107 aa8.58□□□□□ -1.04
LIMS1-214ENST00000542845 EPRSP07814 1512 aaKnown RBP8.58□□□□□ -1.04
LIMS1-214ENST00000542845 UACAQ9BZF9 1416 aa8.55□□□□□ -1.04
LIMS1-214ENST00000542845 ARID4BQ4LE39 1312 aaPredicted RBP8.54□□□□□ -1.04
LIMS1-214ENST00000542845 HSPA2P54652 639 aa8.54□□□□□ -1.04
LIMS1-214ENST00000542845 CERKQ8TCT0 537 aa8.54□□□□□ -1.04
LIMS1-214ENST00000542845 ZCCHC11Q5TAX3 1644 aaKnown RBP8.54□□□□□ -1.04
LIMS1-214ENST00000542845 PTPRMP28827 1452 aa8.52□□□□□ -1.05
LIMS1-214ENST00000542845 IGF1RP08069 1367 aa8.52□□□□□ -1.05
LIMS1-214ENST00000542845 CD109Q6YHK3 1445 aa8.52□□□□□ -1.05
LIMS1-214ENST00000542845 UHRF1BP1LA0JNW5 1464 aa8.51□□□□□ -1.05
LIMS1-214ENST00000542845 NPM3O75607 178 aaKnown RBP8.51□□□□□ -1.05
LIMS1-214ENST00000542845 KDM5BQ9UGL1 1544 aa8.49□□□□□ -1.05
LIMS1-214ENST00000542845 PCF11O94913 1555 aaKnown RBP8.48□□□□□ -1.05
LIMS1-214ENST00000542845 IQGAP2Q13576 1575 aa8.48□□□□□ -1.05
LIMS1-214ENST00000542845 RNF216Q9NWF9 866 aaPredicted RBP8.48□□□□□ -1.05
LIMS1-214ENST00000542845 WDR7Q9Y4E6 1490 aa8.48□□□□□ -1.05
LIMS1-214ENST00000542845 CARMIL1Q5VZK9 1371 aa8.48□□□□□ -1.05
LIMS1-214ENST00000542845 ADAMTSL3P82987 1691 aa8.47□□□□□ -1.05
LIMS1-214ENST00000542845 CFAP43Q8NDM7 1665 aa8.47□□□□□ -1.05
LIMS1-214ENST00000542845 ARID3CA6NKF2 412 aa8.47□□□□□ -1.05
LIMS1-214ENST00000542845 RAPGEF3O95398 923 aa8.47□□□□□ -1.05
LIMS1-214ENST00000542845 KIF27Q86VH2 1401 aa8.46□□□□□ -1.05
LIMS1-214ENST00000542845 MAGI3Q5TCQ9 1506 aa8.46□□□□□ -1.05
LIMS1-214ENST00000542845 DISP1Q96F81 1524 aa8.46□□□□□ -1.05
LIMS1-214ENST00000542845 MADDQ8WXG6 1647 aa8.46□□□□□ -1.06
LIMS1-214ENST00000542845 RIMS1Q86UR5 1692 aaKnown RBP8.46□□□□□ -1.06
LIMS1-214ENST00000542845 BCORL1Q5H9F3 1711 aa8.44□□□□□ -1.06
LIMS1-214ENST00000542845 CNKSR2Q8WXI2 1034 aa8.44□□□□□ -1.06
LIMS1-214ENST00000542845 SPATA31D1Q6ZQQ2 1576 aa8.44□□□□□ -1.06
LIMS1-214ENST00000542845 MLECQ14165 292 aa8.42□□□□□ -1.06
LIMS1-214ENST00000542845 KIAA0556O60303 1618 aa8.41□□□□□ -1.06
LIMS1-214ENST00000542845 ARAP3Q8WWN8 1544 aa8.4□□□□□ -1.06
LIMS1-214ENST00000542845 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.39□□□□□ -1.07
LIMS1-214ENST00000542845 HNRNPUL2Q1KMD3 747 aaKnown RBP8.39□□□□□ -1.07
LIMS1-214ENST00000542845 UGGT2Q9NYU1 1516 aa8.38□□□□□ -1.07
LIMS1-214ENST00000542845 P3H3Q8IVL6 736 aa8.37□□□□□ -1.07
LIMS1-214ENST00000542845 FAM9AQ8IZU1 332 aaPredicted RBP8.37□□□□□ -1.07
LIMS1-214ENST00000542845 CEBPAP49715 358 aaPredicted RBP8.35□□□□□ -1.07
LIMS1-214ENST00000542845 ABCA8O94911 1581 aa8.34□□□□□ -1.07
LIMS1-214ENST00000542845 PHLDB1Q86UU1 1377 aa8.34□□□□□ -1.07
LIMS1-214ENST00000542845 RAPGEF2Q9Y4G8 1499 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms