RNA–Protein interactions for RNA: ENST00000540848.5

LMO3-224, Transcript of LIM domain only 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LMO3, Length 1,574 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-224ENST00000540848 CCDC88BA6NC98 1476 aa16.59■□□□□ 0.25
LMO3-224ENST00000540848 ATAD2BQ9ULI0 1458 aa16.54■□□□□ 0.24
LMO3-224ENST00000540848 C19orf67A6NJJ6 358 aa16.49■□□□□ 0.23
LMO3-224ENST00000540848 BAZ1BQ9UIG0 1483 aaKnown RBP16.47■□□□□ 0.23
LMO3-224ENST00000540848 HMGXB3Q12766 1538 aa16.42■□□□□ 0.22
LMO3-224ENST00000540848 PROM2Q8N271 834 aa16.42■□□□□ 0.22
LMO3-224ENST00000540848 STAG3Q9UJ98 1225 aa16.4■□□□□ 0.22
LMO3-224ENST00000540848 CREBZFQ9NS37 354 aa16.39■□□□□ 0.21
LMO3-224ENST00000540848 FARP1Q9Y4F1 1045 aaPredicted RBP16.39■□□□□ 0.21
LMO3-224ENST00000540848 NCAPD3P42695 1498 aa16.37■□□□□ 0.21
LMO3-224ENST00000540848 LOC105371045A0A1W2PR82 267 aa16.36■□□□□ 0.21
LMO3-224ENST00000540848 ABCC8Q09428 1581 aa16.3■□□□□ 0.2
LMO3-224ENST00000540848 EEA1Q15075 1411 aa16.3■□□□□ 0.2
LMO3-224ENST00000540848 WRNQ14191 1432 aaPredicted RBP eCLIP16.24■□□□□ 0.19
LMO3-224ENST00000540848 CD44P16070 742 aaKnown RBP16.23■□□□□ 0.19
LMO3-224ENST00000540848 GABBR2O75899 941 aa16.2■□□□□ 0.18
LMO3-224ENST00000540848 FAM9AQ8IZU1 332 aaPredicted RBP16.2■□□□□ 0.18
LMO3-224ENST00000540848 MNX1P50219 401 aaPredicted RBP16.18■□□□□ 0.18
LMO3-224ENST00000540848 SYNJ1O43426 1573 aa16.12■□□□□ 0.17
LMO3-224ENST00000540848 TOP2BQ02880 1626 aa16.1■□□□□ 0.17
LMO3-224ENST00000540848 CFTRP13569 1480 aa16.09■□□□□ 0.17
LMO3-224ENST00000540848 PRDM2Q13029 1718 aa16.09■□□□□ 0.17
LMO3-224ENST00000540848 FKBP8Q14318 412 aa16.09■□□□□ 0.17
LMO3-224ENST00000540848 BIVM-ERCC5R4GMW8 1640 aa16.08■□□□□ 0.17
LMO3-224ENST00000540848 SOGA1O94964 1423 aa16.07■□□□□ 0.16
LMO3-224ENST00000540848 TRIM26Q12899 539 aaPredicted RBP16.05■□□□□ 0.16
LMO3-224ENST00000540848 CC2D2AQ9P2K1 1620 aa16.04■□□□□ 0.16
LMO3-224ENST00000540848 ZRANB1Q9UGI0 708 aa16.03■□□□□ 0.16
LMO3-224ENST00000540848 TNIKQ9UKE5 1360 aa16.03■□□□□ 0.16
LMO3-224ENST00000540848 PCGF6Q9BYE7 350 aa16.02■□□□□ 0.16
LMO3-224ENST00000540848 KIF21BO75037 1637 aa16.01■□□□□ 0.15
LMO3-224ENST00000540848 GOLGA3Q08378 1498 aa16.01■□□□□ 0.15
LMO3-224ENST00000540848 ZNF579Q8NAF0 562 aaKnown RBP16■□□□□ 0.15
LMO3-224ENST00000540848 CEP164Q9UPV0 1460 aa16■□□□□ 0.15
LMO3-224ENST00000540848 CADPSQ9ULU8 1353 aa15.96■□□□□ 0.15
LMO3-224ENST00000540848 RUSC2Q8N2Y8 1516 aa15.95■□□□□ 0.14
LMO3-224ENST00000540848 NPM1P06748 294 aaKnown RBP eCLIP15.95■□□□□ 0.14
LMO3-224ENST00000540848 POTEIP0CG38 1075 aa15.93■□□□□ 0.14
LMO3-224ENST00000540848 CEP162Q5TB80 1403 aa15.93■□□□□ 0.14
LMO3-224ENST00000540848 HRCP23327 699 aa15.92■□□□□ 0.14
LMO3-224ENST00000540848 CUX1P39880 1505 aa15.92■□□□□ 0.14
LMO3-224ENST00000540848 PHF12Q96QT6 1004 aa15.88■□□□□ 0.13
LMO3-224ENST00000540848 MIER1Q8N108 512 aa15.87■□□□□ 0.13
LMO3-224ENST00000540848 ERICH3Q5RHP9 1530 aa15.86■□□□□ 0.13
LMO3-224ENST00000540848 CLCN6P51797 869 aa15.86■□□□□ 0.13
LMO3-224ENST00000540848 GALR2O43603 387 aaPredicted RBP15.84■□□□□ 0.13
LMO3-224ENST00000540848 UBTFP17480 764 aaKnown RBP15.84■□□□□ 0.13
LMO3-224ENST00000540848 KIF27Q86VH2 1401 aa15.83■□□□□ 0.13
LMO3-224ENST00000540848 PAK3O75914 559 aaPredicted RBP15.83■□□□□ 0.12
LMO3-224ENST00000540848 PRXQ9BXM0 1461 aa15.79■□□□□ 0.12
LMO3-224ENST00000540848 LAMC3Q9Y6N6 1575 aa15.79■□□□□ 0.12
LMO3-224ENST00000540848 FANCD2Q9BXW9 1451 aa15.77■□□□□ 0.11
LMO3-224ENST00000540848 RAPGEF2Q9Y4G8 1499 aa15.76■□□□□ 0.11
LMO3-224ENST00000540848 TSPYL2Q9H2G4 693 aaPredicted RBP15.75■□□□□ 0.11
LMO3-224ENST00000540848 PLCD3Q8N3E9 789 aa15.75■□□□□ 0.11
LMO3-224ENST00000540848 CLIP1P30622 1438 aa15.74■□□□□ 0.11
LMO3-224ENST00000540848 RASEFQ8IZ41 740 aa15.74■□□□□ 0.11
LMO3-224ENST00000540848 DNMBPQ6XZF7 1577 aa15.73■□□□□ 0.11
LMO3-224ENST00000540848 CCDC61Q9Y6R9 512 aa15.72■□□□□ 0.11
LMO3-224ENST00000540848 PLEKHG5O94827 1062 aa15.71■□□□□ 0.11
LMO3-224ENST00000540848 DCBLD2Q96PD2 775 aa15.7■□□□□ 0.1
LMO3-224ENST00000540848 FGD5Q6ZNL6 1462 aa15.7■□□□□ 0.1
LMO3-224ENST00000540848 ZEB1P37275 1124 aaPredicted RBP15.69■□□□□ 0.1
LMO3-224ENST00000540848 VPS8Q8N3P4 1428 aa15.67■□□□□ 0.1
LMO3-224ENST00000540848 MS4A3Q96HJ5 214 aa15.67■□□□□ 0.1
LMO3-224ENST00000540848 CUX2O14529 1486 aa15.65■□□□□ 0.1
LMO3-224ENST00000540848 PDS5BQ9NTI5 1447 aa15.65■□□□□ 0.1
LMO3-224ENST00000540848 NUBP1P53384 320 aa15.64■□□□□ 0.09
LMO3-224ENST00000540848 TOPBP1Q92547 1522 aa15.63■□□□□ 0.09
LMO3-224ENST00000540848 LHX8Q68G74 356 aa15.62■□□□□ 0.09
LMO3-224ENST00000540848 ABCA10Q8WWZ4 1543 aa15.62■□□□□ 0.09
LMO3-224ENST00000540848 NESP48681 1621 aa15.6■□□□□ 0.09
LMO3-224ENST00000540848 KIF12Q96FN5 646 aa15.6■□□□□ 0.09
LMO3-224ENST00000540848 IGF1RP08069 1367 aa15.6■□□□□ 0.09
LMO3-224ENST00000540848 FBXO3Q9UK99 471 aa15.59■□□□□ 0.09
LMO3-224ENST00000540848 POLA1P09884 1462 aaPredicted RBP15.58■□□□□ 0.08
LMO3-224ENST00000540848 PELP1Q8IZL8 1130 aaKnown RBP15.57■□□□□ 0.08
LMO3-224ENST00000540848 ZBTB47Q9UFB7 747 aaPredicted RBP15.55■□□□□ 0.08
LMO3-224ENST00000540848 CARMIL1Q5VZK9 1371 aa15.55■□□□□ 0.08
LMO3-224ENST00000540848 CUL7Q14999 1698 aa15.54■□□□□ 0.08
LMO3-224ENST00000540848 WDR97A6NE52 1622 aa15.53■□□□□ 0.08
LMO3-224ENST00000540848 URB2Q14146 1524 aaKnown RBP15.52■□□□□ 0.07
LMO3-224ENST00000540848 ARAP1Q96P48 1450 aa15.51■□□□□ 0.07
LMO3-224ENST00000540848 MAP3K13O43283 966 aa15.51■□□□□ 0.07
LMO3-224ENST00000540848 TRPC6Q9Y210 931 aa15.51■□□□□ 0.07
LMO3-224ENST00000540848 VASPP50552 380 aaPredicted RBP15.5■□□□□ 0.07
LMO3-224ENST00000540848 ASTLQ6HA08 431 aaPredicted RBP15.49■□□□□ 0.07
LMO3-224ENST00000540848 PPARGC1BQ86YN6 1023 aaKnown RBP15.49■□□□□ 0.07
LMO3-224ENST00000540848 ATMINO43313 823 aaPredicted RBP15.48■□□□□ 0.07
LMO3-224ENST00000540848 KIF21AQ7Z4S6 1674 aa15.47■□□□□ 0.07
LMO3-224ENST00000540848 RAD54L2Q9Y4B4 1467 aa15.47■□□□□ 0.07
LMO3-224ENST00000540848 ABCA5Q8WWZ7 1642 aa15.45■□□□□ 0.06
LMO3-224ENST00000540848 ARHGAP35Q9NRY4 1499 aa15.45■□□□□ 0.06
LMO3-224ENST00000540848 POTEB2H3BUK9 544 aa15.42■□□□□ 0.06
LMO3-224ENST00000540848 MAP3K1Q13233 1512 aa15.41■□□□□ 0.06
LMO3-224ENST00000540848 EFCAB5A4FU69 1503 aa15.4■□□□□ 0.06
LMO3-224ENST00000540848 MRC2Q9UBG0 1479 aa15.4■□□□□ 0.06
LMO3-224ENST00000540848 ATN1P54259 1190 aaPredicted RBP15.4■□□□□ 0.06
LMO3-224ENST00000540848 FAM212AQ96EL1 285 aa15.4■□□□□ 0.06
LMO3-224ENST00000540848 BMP2KQ9NSY1 1161 aaPredicted RBP15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms