RNA–Protein interactions for RNA: ENST00000540109.5

PTPRD-214, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRD, Length 6,210 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-214ENST00000540109 POLA1P09884 1462 aaPredicted RBP8.77□□□□□ -1.01
PTPRD-214ENST00000540109 RTL5Q5HYW3 569 aaPredicted RBP8.76□□□□□ -1.01
PTPRD-214ENST00000540109 ARAP1Q96P48 1450 aa8.75□□□□□ -1.01
PTPRD-214ENST00000540109 ABCA5Q8WWZ7 1642 aa8.73□□□□□ -1.01
PTPRD-214ENST00000540109 AQRO60306 1485 aaKnown RBP eCLIP8.73□□□□□ -1.01
PTPRD-214ENST00000540109 CTTNBP2Q8WZ74 1663 aa8.72□□□□□ -1.01
PTPRD-214ENST00000540109 DIEXFQ68CQ4 756 aaKnown RBP8.71□□□□□ -1.01
PTPRD-214ENST00000540109 ARHGAP35Q9NRY4 1499 aa8.71□□□□□ -1.01
PTPRD-214ENST00000540109 URB2Q14146 1524 aaKnown RBP8.71□□□□□ -1.01
PTPRD-214ENST00000540109 MRC2Q9UBG0 1479 aa8.71□□□□□ -1.02
PTPRD-214ENST00000540109 KIF21AQ7Z4S6 1674 aa8.71□□□□□ -1.02
PTPRD-214ENST00000540109 BCANQ96GW7 911 aa8.71□□□□□ -1.02
PTPRD-214ENST00000540109 THOC2Q8NI27 1593 aaKnown RBP8.69□□□□□ -1.02
PTPRD-214ENST00000540109 NESP48681 1621 aa8.69□□□□□ -1.02
PTPRD-214ENST00000540109 FYCO1Q9BQS8 1478 aa8.68□□□□□ -1.02
PTPRD-214ENST00000540109 FMN1Q68DA7 1419 aa8.68□□□□□ -1.02
PTPRD-214ENST00000540109 GAPVD1Q14C86 1478 aa8.68□□□□□ -1.02
PTPRD-214ENST00000540109 RRBP1Q9P2E9 1410 aaKnown RBP8.67□□□□□ -1.02
PTPRD-214ENST00000540109 CFAP43Q8NDM7 1665 aa8.67□□□□□ -1.02
PTPRD-214ENST00000540109 TIAM1Q13009 1591 aa8.67□□□□□ -1.02
PTPRD-214ENST00000540109 IFT140Q96RY7 1462 aa8.66□□□□□ -1.02
PTPRD-214ENST00000540109 TARBP1Q13395 1621 aaKnown RBP8.66□□□□□ -1.02
PTPRD-214ENST00000540109 RAD54L2Q9Y4B4 1467 aa8.65□□□□□ -1.02
PTPRD-214ENST00000540109 NEUROD1Q13562 356 aa8.65□□□□□ -1.02
PTPRD-214ENST00000540109 WDR62O43379 1518 aa8.65□□□□□ -1.02
PTPRD-214ENST00000540109 CASKIN1Q8WXD9 1431 aa8.64□□□□□ -1.03
PTPRD-214ENST00000540109 ANP32EQ9BTT0 268 aa8.63□□□□□ -1.03
PTPRD-214ENST00000540109 SAMD9Q5K651 1589 aa8.63□□□□□ -1.03
PTPRD-214ENST00000540109 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.63□□□□□ -1.03
PTPRD-214ENST00000540109 GRIN2BQ13224 1484 aa8.62□□□□□ -1.03
PTPRD-214ENST00000540109 PBRM1Q86U86 1689 aa8.62□□□□□ -1.03
PTPRD-214ENST00000540109 GLIPR1L2Q4G1C9 344 aa8.61□□□□□ -1.03
PTPRD-214ENST00000540109 ADAMTS12P58397 1594 aa8.61□□□□□ -1.03
PTPRD-214ENST00000540109 LRRC9Q6ZRR7 1453 aa8.6□□□□□ -1.03
PTPRD-214ENST00000540109 CCNB3Q8WWL7 1395 aa8.6□□□□□ -1.03
PTPRD-214ENST00000540109 CCDC18Q5T9S5 1454 aa8.6□□□□□ -1.03
PTPRD-214ENST00000540109 PCF11O94913 1555 aaKnown RBP8.59□□□□□ -1.03
PTPRD-214ENST00000540109 DAXXQ9UER7 740 aaPredicted RBP8.59□□□□□ -1.03
PTPRD-214ENST00000540109 IQGAP2Q13576 1575 aa8.57□□□□□ -1.04
PTPRD-214ENST00000540109 HECW1Q76N89 1606 aa8.56□□□□□ -1.04
PTPRD-214ENST00000540109 EHBP1L1Q8N3D4 1523 aa8.56□□□□□ -1.04
PTPRD-214ENST00000540109 MAGI1Q96QZ7 1491 aaPredicted RBP8.56□□□□□ -1.04
PTPRD-214ENST00000540109 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.56□□□□□ -1.04
PTPRD-214ENST00000540109 TDRD9Q8NDG6 1382 aaKnown RBP8.55□□□□□ -1.04
PTPRD-214ENST00000540109 UGGT2Q9NYU1 1516 aa8.55□□□□□ -1.04
PTPRD-214ENST00000540109 SNAPC4Q5SXM2 1469 aa8.54□□□□□ -1.04
PTPRD-214ENST00000540109 ERCC6Q03468 1493 aa8.54□□□□□ -1.04
PTPRD-214ENST00000540109 KIAA0586Q9BVV6 1533 aa8.53□□□□□ -1.04
PTPRD-214ENST00000540109 FHOD3Q2V2M9 1422 aa8.53□□□□□ -1.04
PTPRD-214ENST00000540109 SUPT6HQ7KZ85 1726 aaKnown RBP8.52□□□□□ -1.05
PTPRD-214ENST00000540109 HNRNPUL2Q1KMD3 747 aaKnown RBP8.51□□□□□ -1.05
PTPRD-214ENST00000540109 KANK4Q5T7N3 995 aaPredicted RBP8.51□□□□□ -1.05
PTPRD-214ENST00000540109 MTUS2Q5JR59 1369 aa8.5□□□□□ -1.05
PTPRD-214ENST00000540109 EIF4G3O43432 1585 aaKnown RBP8.49□□□□□ -1.05
PTPRD-214ENST00000540109 TIMELESSQ9UNS1 1208 aa8.49□□□□□ -1.05
PTPRD-214ENST00000540109 NBR1Q14596 966 aa8.49□□□□□ -1.05
PTPRD-214ENST00000540109 RTN4Q9NQC3 1192 aaKnown RBP8.49□□□□□ -1.05
PTPRD-214ENST00000540109 SETD5Q9C0A6 1442 aa8.49□□□□□ -1.05
PTPRD-214ENST00000540109 SYNJ2O15056 1496 aa8.49□□□□□ -1.05
PTPRD-214ENST00000540109 GRIN2AQ12879 1464 aa8.48□□□□□ -1.05
PTPRD-214ENST00000540109 CDK11AQ9UQ88 783 aaPredicted RBP8.48□□□□□ -1.05
PTPRD-214ENST00000540109 DHX57Q6P158 1386 aaKnown RBP8.47□□□□□ -1.05
PTPRD-214ENST00000540109 FGD6Q6ZV73 1430 aa8.47□□□□□ -1.05
PTPRD-214ENST00000540109 MYOM3Q5VTT5 1437 aa8.47□□□□□ -1.05
PTPRD-214ENST00000540109 AKNAQ7Z591 1439 aa8.47□□□□□ -1.05
PTPRD-214ENST00000540109 CCDC136Q96JN2 1154 aa8.47□□□□□ -1.05
PTPRD-214ENST00000540109 MIA2Q96PC5 1412 aa8.47□□□□□ -1.05
PTPRD-214ENST00000540109 ARHGEF11O15085 1522 aa8.46□□□□□ -1.05
PTPRD-214ENST00000540109 KIAA0556O60303 1618 aa8.46□□□□□ -1.05
PTPRD-214ENST00000540109 ZNF316A6NFI3 1004 aaPredicted RBP8.46□□□□□ -1.05
PTPRD-214ENST00000540109 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.46□□□□□ -1.05
PTPRD-214ENST00000540109 CARMIL2Q6F5E8 1435 aa8.46□□□□□ -1.06
PTPRD-214ENST00000540109 PHLDB1Q86UU1 1377 aa8.45□□□□□ -1.06
PTPRD-214ENST00000540109 TCOF1Q13428 1488 aaKnown RBP8.45□□□□□ -1.06
PTPRD-214ENST00000540109 NCOA2Q15596 1464 aa8.44□□□□□ -1.06
PTPRD-214ENST00000540109 EPRSP07814 1512 aaKnown RBP8.43□□□□□ -1.06
PTPRD-214ENST00000540109 NUP160Q12769 1436 aa8.43□□□□□ -1.06
PTPRD-214ENST00000540109 RAPGEF6Q8TEU7 1601 aa8.42□□□□□ -1.06
PTPRD-214ENST00000540109 PODXL2Q9NZ53 605 aa8.42□□□□□ -1.06
PTPRD-214ENST00000540109 RAB3GAP2Q9H2M9 1393 aa8.42□□□□□ -1.06
PTPRD-214ENST00000540109 HFM1A2PYH4 1435 aa8.42□□□□□ -1.06
PTPRD-214ENST00000540109 ZNF608Q9ULD9 1512 aaPredicted RBP8.41□□□□□ -1.06
PTPRD-214ENST00000540109 AMER1Q5JTC6 1135 aaPredicted RBP8.41□□□□□ -1.06
PTPRD-214ENST00000540109 PTPN23Q9H3S7 1636 aa8.4□□□□□ -1.06
PTPRD-214ENST00000540109 P3H3Q8IVL6 736 aa8.4□□□□□ -1.06
PTPRD-214ENST00000540109 ATP1B4Q9UN42 357 aaPredicted RBP8.4□□□□□ -1.06
PTPRD-214ENST00000540109 DISP1Q96F81 1524 aa8.4□□□□□ -1.07
PTPRD-214ENST00000540109 ITSN2Q9NZM3 1697 aa8.39□□□□□ -1.07
PTPRD-214ENST00000540109 FAM50AQ14320 339 aaKnown RBP8.39□□□□□ -1.07
PTPRD-214ENST00000540109 DNAJC5BQ9UF47 199 aa8.39□□□□□ -1.07
PTPRD-214ENST00000540109 LRRIQ1Q96JM4 1722 aa8.38□□□□□ -1.07
PTPRD-214ENST00000540109 CHMP7Q8WUX9 453 aaPredicted RBP8.38□□□□□ -1.07
PTPRD-214ENST00000540109 GCC2Q8IWJ2 1684 aa8.38□□□□□ -1.07
PTPRD-214ENST00000540109 ADCY10Q96PN6 1610 aa8.38□□□□□ -1.07
PTPRD-214ENST00000540109 UACAQ9BZF9 1416 aa8.38□□□□□ -1.07
PTPRD-214ENST00000540109 A0A0U1RQG5 324 aaPredicted RBP8.37□□□□□ -1.07
PTPRD-214ENST00000540109 ROCK1Q13464 1354 aa8.37□□□□□ -1.07
PTPRD-214ENST00000540109 CEP170Q5SW79 1584 aa8.37□□□□□ -1.07
PTPRD-214ENST00000540109 FKBP8Q14318 412 aa8.36□□□□□ -1.07
PTPRD-214ENST00000540109 TROQ12816 1431 aaPredicted RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms