RNA–Protein interactions for RNA: ENST00000540109.5

PTPRD-214, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRD, Length 6,210 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-214ENST00000540109 NISCHQ9Y2I1 1504 aa12.48□□□□□ -0.41
PTPRD-214ENST00000540109 CCDC180Q9P1Z9 1646 aa10.92□□□□□ -0.66
PTPRD-214ENST00000540109 ZCCHC6Q5VYS8 1495 aaKnown RBP10.55□□□□□ -0.72
PTPRD-214ENST00000540109 DCAF1Q9Y4B6 1507 aa10.47□□□□□ -0.73
PTPRD-214ENST00000540109 MYT1Q01538 1121 aa10.32□□□□□ -0.76
PTPRD-214ENST00000540109 MYO15BQ96JP2 1530 aa10.3□□□□□ -0.76
PTPRD-214ENST00000540109 PELP1Q8IZL8 1130 aaKnown RBP10.17□□□□□ -0.78
PTPRD-214ENST00000540109 NACADO15069 1562 aa10.09□□□□□ -0.79
PTPRD-214ENST00000540109 SHROOM4Q9ULL8 1493 aa10.08□□□□□ -0.8
PTPRD-214ENST00000540109 DCAF8L2P0C7V8 631 aa10.02□□□□□ -0.81
PTPRD-214ENST00000540109 ABCC9O60706 1549 aa9.93□□□□□ -0.82
PTPRD-214ENST00000540109 RB1CC1Q8TDY2 1594 aa9.93□□□□□ -0.82
PTPRD-214ENST00000540109 SUPT5HO00267 1087 aaKnown RBP9.86□□□□□ -0.83
PTPRD-214ENST00000540109 SCRIBQ14160 1630 aa9.86□□□□□ -0.83
PTPRD-214ENST00000540109 RSF1Q96T23 1441 aaPredicted RBP9.71□□□□□ -0.85
PTPRD-214ENST00000540109 BAZ1AQ9NRL2 1556 aaPredicted RBP9.68□□□□□ -0.86
PTPRD-214ENST00000540109 TTBK1Q5TCY1 1321 aaPredicted RBP9.64□□□□□ -0.87
PTPRD-214ENST00000540109 CHIC1Q5VXU3 224 aa9.63□□□□□ -0.87
PTPRD-214ENST00000540109 UNC13AQ9UPW8 1703 aa9.57□□□□□ -0.88
PTPRD-214ENST00000540109 MROH2BQ7Z745 1585 aa9.56□□□□□ -0.88
PTPRD-214ENST00000540109 SMARCA4P51532 1647 aa9.55□□□□□ -0.88
PTPRD-214ENST00000540109 CECR2Q9BXF3 1484 aa9.53□□□□□ -0.88
PTPRD-214ENST00000540109 TOP2AP11388 1531 aaKnown RBP9.53□□□□□ -0.88
PTPRD-214ENST00000540109 PEG3Q9GZU2 1588 aa9.5□□□□□ -0.89
PTPRD-214ENST00000540109 BICRAQ9NZM4 1560 aa9.48□□□□□ -0.89
PTPRD-214ENST00000540109 WIZO95785 1651 aa9.48□□□□□ -0.89
PTPRD-214ENST00000540109 SMARCA2P51531 1590 aa9.43□□□□□ -0.9
PTPRD-214ENST00000540109 EIF4G1Q04637 1599 aaKnown RBP9.4□□□□□ -0.9
PTPRD-214ENST00000540109 ZEB1P37275 1124 aaPredicted RBP9.39□□□□□ -0.91
PTPRD-214ENST00000540109 PCGF6Q9BYE7 350 aa9.39□□□□□ -0.91
PTPRD-214ENST00000540109 TRIM41Q8WV44 630 aa9.38□□□□□ -0.91
PTPRD-214ENST00000540109 CENPBP07199 599 aaPredicted RBP9.35□□□□□ -0.91
PTPRD-214ENST00000540109 ERICH6Q7L0X2 663 aa9.34□□□□□ -0.91
PTPRD-214ENST00000540109 CCDC88BA6NC98 1476 aa9.33□□□□□ -0.92
PTPRD-214ENST00000540109 EEA1Q15075 1411 aa9.33□□□□□ -0.92
PTPRD-214ENST00000540109 HMGXB3Q12766 1538 aa9.32□□□□□ -0.92
PTPRD-214ENST00000540109 ATAD2BQ9ULI0 1458 aa9.31□□□□□ -0.92
PTPRD-214ENST00000540109 BAZ1BQ9UIG0 1483 aaKnown RBP9.31□□□□□ -0.92
PTPRD-214ENST00000540109 NCAPD3P42695 1498 aa9.26□□□□□ -0.93
PTPRD-214ENST00000540109 PABPN1Q86U42 306 aaKnown RBP eCLIP9.26□□□□□ -0.93
PTPRD-214ENST00000540109 CCER1Q8TC90 406 aaPredicted RBP9.24□□□□□ -0.93
PTPRD-214ENST00000540109 HRCP23327 699 aa9.23□□□□□ -0.93
PTPRD-214ENST00000540109 WRNQ14191 1432 aaPredicted RBP eCLIP9.19□□□□□ -0.94
PTPRD-214ENST00000540109 PPARGC1BQ86YN6 1023 aaKnown RBP9.18□□□□□ -0.94
PTPRD-214ENST00000540109 YTHDC1Q96MU7 727 aaKnown RBP9.18□□□□□ -0.94
PTPRD-214ENST00000540109 ABCC8Q09428 1581 aa9.13□□□□□ -0.95
PTPRD-214ENST00000540109 TRIM26Q12899 539 aaPredicted RBP9.13□□□□□ -0.95
PTPRD-214ENST00000540109 PRDM2Q13029 1718 aa9.13□□□□□ -0.95
PTPRD-214ENST00000540109 LOC105371045A0A1W2PR82 267 aa9.12□□□□□ -0.95
PTPRD-214ENST00000540109 BIVM-ERCC5R4GMW8 1640 aa9.12□□□□□ -0.95
PTPRD-214ENST00000540109 TOP2BQ02880 1626 aa9.11□□□□□ -0.95
PTPRD-214ENST00000540109 GOLGA3Q08378 1498 aa9.11□□□□□ -0.95
PTPRD-214ENST00000540109 KIF21BO75037 1637 aa9.11□□□□□ -0.95
PTPRD-214ENST00000540109 TNIKQ9UKE5 1360 aa9.11□□□□□ -0.95
PTPRD-214ENST00000540109 CEP164Q9UPV0 1460 aa9.1□□□□□ -0.95
PTPRD-214ENST00000540109 CFTRP13569 1480 aa9.09□□□□□ -0.95
PTPRD-214ENST00000540109 CSRNP3Q8WYN3 585 aa9.07□□□□□ -0.96
PTPRD-214ENST00000540109 SYNJ1O43426 1573 aa9.07□□□□□ -0.96
PTPRD-214ENST00000540109 FAM9AQ8IZU1 332 aaPredicted RBP9.05□□□□□ -0.96
PTPRD-214ENST00000540109 ERICH3Q5RHP9 1530 aa9.04□□□□□ -0.96
PTPRD-214ENST00000540109 SOGA1O94964 1423 aa9.01□□□□□ -0.97
PTPRD-214ENST00000540109 CEP162Q5TB80 1403 aa9.01□□□□□ -0.97
PTPRD-214ENST00000540109 EHMT2Q96KQ7 1210 aa9.01□□□□□ -0.97
PTPRD-214ENST00000540109 CADPSQ9ULU8 1353 aa9□□□□□ -0.97
PTPRD-214ENST00000540109 CC2D2AQ9P2K1 1620 aa9□□□□□ -0.97
PTPRD-214ENST00000540109 GTF3C3Q9Y5Q9 886 aa8.99□□□□□ -0.97
PTPRD-214ENST00000540109 KIF27Q86VH2 1401 aa8.98□□□□□ -0.97
PTPRD-214ENST00000540109 CUX1P39880 1505 aa8.95□□□□□ -0.98
PTPRD-214ENST00000540109 LAMC3Q9Y6N6 1575 aa8.94□□□□□ -0.98
PTPRD-214ENST00000540109 UBTFP17480 764 aaKnown RBP8.93□□□□□ -0.98
PTPRD-214ENST00000540109 PRXQ9BXM0 1461 aa8.93□□□□□ -0.98
PTPRD-214ENST00000540109 CLSPNQ9HAW4 1339 aa8.92□□□□□ -0.98
PTPRD-214ENST00000540109 CLIP1P30622 1438 aa8.92□□□□□ -0.98
PTPRD-214ENST00000540109 MYT1LQ9UL68 1186 aa8.91□□□□□ -0.98
PTPRD-214ENST00000540109 DNMBPQ6XZF7 1577 aa8.91□□□□□ -0.98
PTPRD-214ENST00000540109 RANGAP1P46060 587 aaPredicted RBP8.91□□□□□ -0.98
PTPRD-214ENST00000540109 RUSC2Q8N2Y8 1516 aa8.9□□□□□ -0.98
PTPRD-214ENST00000540109 VPS8Q8N3P4 1428 aa8.9□□□□□ -0.98
PTPRD-214ENST00000540109 FANCD2Q9BXW9 1451 aa8.88□□□□□ -0.99
PTPRD-214ENST00000540109 SCAF1Q9H7N4 1312 aaKnown RBP8.87□□□□□ -0.99
PTPRD-214ENST00000540109 NEFLP07196 543 aa8.87□□□□□ -0.99
PTPRD-214ENST00000540109 BCL11AQ9H165 835 aa8.87□□□□□ -0.99
PTPRD-214ENST00000540109 APLP2Q06481 763 aa8.86□□□□□ -0.99
PTPRD-214ENST00000540109 RAPGEF2Q9Y4G8 1499 aa8.86□□□□□ -0.99
PTPRD-214ENST00000540109 PDS5BQ9NTI5 1447 aa8.86□□□□□ -0.99
PTPRD-214ENST00000540109 EIF5BO60841 1220 aaKnown RBP8.85□□□□□ -0.99
PTPRD-214ENST00000540109 CUL7Q14999 1698 aa8.84□□□□□ -0.99
PTPRD-214ENST00000540109 FGD5Q6ZNL6 1462 aa8.84□□□□□ -0.99
PTPRD-214ENST00000540109 ABCA10Q8WWZ4 1543 aa8.84□□□□□ -0.99
PTPRD-214ENST00000540109 CUX2O14529 1486 aa8.83□□□□□ -1
PTPRD-214ENST00000540109 TOPBP1Q92547 1522 aa8.81□□□□□ -1
PTPRD-214ENST00000540109 ACIN1Q9UKV3 1341 aaKnown RBP8.81□□□□□ -1
PTPRD-214ENST00000540109 MAP3K1Q13233 1512 aa8.81□□□□□ -1
PTPRD-214ENST00000540109 WDR97A6NE52 1622 aa8.8□□□□□ -1
PTPRD-214ENST00000540109 EFCAB5A4FU69 1503 aa8.79□□□□□ -1
PTPRD-214ENST00000540109 SLC24A1O60721 1099 aa8.78□□□□□ -1
PTPRD-214ENST00000540109 PRKCSHP14314 528 aaPredicted RBP8.78□□□□□ -1
PTPRD-214ENST00000540109 IGF1RP08069 1367 aa8.78□□□□□ -1
PTPRD-214ENST00000540109 CARMIL1Q5VZK9 1371 aa8.77□□□□□ -1
PTPRD-214ENST00000540109 FHAD1B1AJZ9 1412 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms