RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 PLEKHG5O94827 1062 aa16.92■□□□□ 0.3
USP3-203ENST00000538686 ZMYND15Q9H091 742 aa16.91■□□□□ 0.3
USP3-203ENST00000538686 NEFMP07197 916 aa16.9■□□□□ 0.3
USP3-203ENST00000538686 FAM43AQ8N2R8 423 aa16.9■□□□□ 0.3
USP3-203ENST00000538686 CEP164Q9UPV0 1460 aa16.89■□□□□ 0.29
USP3-203ENST00000538686 CLIP1P30622 1438 aa16.89■□□□□ 0.29
USP3-203ENST00000538686 ABCC8Q09428 1581 aa16.89■□□□□ 0.29
USP3-203ENST00000538686 IRX6P78412 446 aaPredicted RBP16.88■□□□□ 0.29
USP3-203ENST00000538686 CCDC88BA6NC98 1476 aa16.87■□□□□ 0.29
USP3-203ENST00000538686 HNRNPUQ00839 825 aaKnown RBP eCLIP16.85■□□□□ 0.29
USP3-203ENST00000538686 GSE1Q14687 1217 aa16.85■□□□□ 0.29
USP3-203ENST00000538686 BRPF3Q9ULD4 1205 aa16.85■□□□□ 0.29
USP3-203ENST00000538686 TIMELESSQ9UNS1 1208 aa16.85■□□□□ 0.29
USP3-203ENST00000538686 B4GALNT3Q6L9W6 998 aa16.83■□□□□ 0.28
USP3-203ENST00000538686 VSIG10Q8N0Z9 540 aa16.83■□□□□ 0.28
USP3-203ENST00000538686 SOGA1O94964 1423 aa16.82■□□□□ 0.28
USP3-203ENST00000538686 KIF21BO75037 1637 aa16.82■□□□□ 0.28
USP3-203ENST00000538686 RRBP1Q9P2E9 1410 aaKnown RBP16.79■□□□□ 0.28
USP3-203ENST00000538686 BAZ1BQ9UIG0 1483 aaKnown RBP16.77■□□□□ 0.28
USP3-203ENST00000538686 SMARCA2P51531 1590 aa16.77■□□□□ 0.28
USP3-203ENST00000538686 BAZ1AQ9NRL2 1556 aaPredicted RBP16.77■□□□□ 0.28
USP3-203ENST00000538686 NCAPD3P42695 1498 aa16.77■□□□□ 0.27
USP3-203ENST00000538686 WDR97A6NE52 1622 aa16.77■□□□□ 0.27
USP3-203ENST00000538686 MAPKBP1O60336 1514 aa16.76■□□□□ 0.27
USP3-203ENST00000538686 RRP9O43818 475 aaKnown RBP16.75■□□□□ 0.27
USP3-203ENST00000538686 SCRIBQ14160 1630 aa16.71■□□□□ 0.26
USP3-203ENST00000538686 LAS1LQ9Y4W2 734 aaKnown RBP16.68■□□□□ 0.26
USP3-203ENST00000538686 MROH2BQ7Z745 1585 aa16.68■□□□□ 0.26
USP3-203ENST00000538686 HSP90AA2PQ14568 343 aaPredicted RBP16.68■□□□□ 0.26
USP3-203ENST00000538686 DDRGK1Q96HY6 314 aa16.67■□□□□ 0.26
USP3-203ENST00000538686 PEG3Q9GZU2 1588 aa16.67■□□□□ 0.26
USP3-203ENST00000538686 ZBED9Q6R2W3 1325 aa16.67■□□□□ 0.26
USP3-203ENST00000538686 WIZO95785 1651 aa16.66■□□□□ 0.26
USP3-203ENST00000538686 RUSC2Q8N2Y8 1516 aa16.63■□□□□ 0.25
USP3-203ENST00000538686 FRAT1Q92837 279 aaPredicted RBP16.62■□□□□ 0.25
USP3-203ENST00000538686 TCERG1O14776 1098 aaKnown RBP16.61■□□□□ 0.25
USP3-203ENST00000538686 CCNB3Q8WWL7 1395 aa16.61■□□□□ 0.25
USP3-203ENST00000538686 HSP90AA1P07900 732 aaKnown RBP16.6■□□□□ 0.25
USP3-203ENST00000538686 RAB3GAP2Q9H2M9 1393 aa16.6■□□□□ 0.25
USP3-203ENST00000538686 MS4A1P11836 297 aa16.58■□□□□ 0.24
USP3-203ENST00000538686 RNF123Q5XPI4 1314 aa16.57■□□□□ 0.24
USP3-203ENST00000538686 NFKBIBQ15653 356 aa16.57■□□□□ 0.24
USP3-203ENST00000538686 SMG6Q86US8 1419 aaKnown RBP16.56■□□□□ 0.24
USP3-203ENST00000538686 CECR2Q9BXF3 1484 aa16.55■□□□□ 0.24
USP3-203ENST00000538686 NPM2Q86SE8 214 aaKnown RBP16.53■□□□□ 0.24
USP3-203ENST00000538686 SETD5Q9C0A6 1442 aa16.53■□□□□ 0.24
USP3-203ENST00000538686 FGD1P98174 961 aa16.52■□□□□ 0.24
USP3-203ENST00000538686 AAMPQ13685 434 aa16.51■□□□□ 0.23
USP3-203ENST00000538686 BACH2Q9BYV9 841 aa16.5■□□□□ 0.23
USP3-203ENST00000538686 CENPJQ9HC77 1338 aaPredicted RBP16.5■□□□□ 0.23
USP3-203ENST00000538686 TOP2AP11388 1531 aaKnown RBP16.5■□□□□ 0.23
USP3-203ENST00000538686 PDE4AP27815 886 aa16.5■□□□□ 0.23
USP3-203ENST00000538686 RBM10P98175 930 aaKnown RBP16.49■□□□□ 0.23
USP3-203ENST00000538686 L1TD1Q5T7N2 865 aaKnown RBP16.47■□□□□ 0.23
USP3-203ENST00000538686 FHAD1B1AJZ9 1412 aa16.47■□□□□ 0.23
USP3-203ENST00000538686 NAP1L5Q96NT1 182 aaPredicted RBP16.47■□□□□ 0.23
USP3-203ENST00000538686 PNNQ9H307 717 aaKnown RBP16.46■□□□□ 0.23
USP3-203ENST00000538686 SYNJ1O43426 1573 aa16.45■□□□□ 0.22
USP3-203ENST00000538686 CALD1Q05682 793 aaKnown RBP16.45■□□□□ 0.22
USP3-203ENST00000538686 PDE4CQ08493 712 aa16.45■□□□□ 0.22
USP3-203ENST00000538686 DCAF11Q8TEB1 546 aa16.45■□□□□ 0.22
USP3-203ENST00000538686 RRAGDQ9NQL2 400 aaPredicted RBP16.44■□□□□ 0.22
USP3-203ENST00000538686 NUDCQ9Y266 331 aa16.44■□□□□ 0.22
USP3-203ENST00000538686 CLCN1P35523 988 aa16.43■□□□□ 0.22
USP3-203ENST00000538686 SIN3AQ96ST3 1273 aa16.42■□□□□ 0.22
USP3-203ENST00000538686 NCOA2Q15596 1464 aa16.42■□□□□ 0.22
USP3-203ENST00000538686 HIRIP3Q9BW71 556 aaPredicted RBP16.42■□□□□ 0.22
USP3-203ENST00000538686 CNTLNQ9NXG0 1405 aa16.4■□□□□ 0.22
USP3-203ENST00000538686 ARAP1Q96P48 1450 aa16.4■□□□□ 0.22
USP3-203ENST00000538686 KANK4Q5T7N3 995 aaPredicted RBP16.39■□□□□ 0.21
USP3-203ENST00000538686 AKNAQ7Z591 1439 aa16.39■□□□□ 0.21
USP3-203ENST00000538686 A0A0U1RQG5 324 aaPredicted RBP16.39■□□□□ 0.21
USP3-203ENST00000538686 PDCL3Q9H2J4 239 aa16.39■□□□□ 0.21
USP3-203ENST00000538686 TONSLQ96HA7 1378 aa16.39■□□□□ 0.21
USP3-203ENST00000538686 RAPGEF2Q9Y4G8 1499 aa16.39■□□□□ 0.21
USP3-203ENST00000538686 MRS2Q9HD23 443 aa16.35■□□□□ 0.21
USP3-203ENST00000538686 TPM2P07951 284 aa16.34■□□□□ 0.21
USP3-203ENST00000538686 FAM9BQ8IZU0 186 aa16.34■□□□□ 0.21
USP3-203ENST00000538686 ERICH3Q5RHP9 1530 aa16.34■□□□□ 0.21
USP3-203ENST00000538686 PRKRIP1Q9H875 184 aaPredicted RBP16.33■□□□□ 0.21
USP3-203ENST00000538686 PRDM4Q9UKN5 801 aa16.31■□□□□ 0.2
USP3-203ENST00000538686 MAP3K1Q13233 1512 aa16.31■□□□□ 0.2
USP3-203ENST00000538686 PDIA4P13667 645 aaKnown RBP16.3■□□□□ 0.2
USP3-203ENST00000538686 FRAT2O75474 233 aaPredicted RBP16.28■□□□□ 0.2
USP3-203ENST00000538686 CCDC184Q52MB2 194 aa16.26■□□□□ 0.19
USP3-203ENST00000538686 MAP7D2Q96T17 732 aa16.23■□□□□ 0.19
USP3-203ENST00000538686 NCLP19338 710 aaKnown RBP16.21■□□□□ 0.19
USP3-203ENST00000538686 ABCA5Q8WWZ7 1642 aa16.21■□□□□ 0.19
USP3-203ENST00000538686 RRP1P56182 461 aaKnown RBP16.2■□□□□ 0.18
USP3-203ENST00000538686 NCOA1Q15788 1441 aa16.17■□□□□ 0.18
USP3-203ENST00000538686 EIF4G2P78344 907 aaKnown RBP eCLIP16.17■□□□□ 0.18
USP3-203ENST00000538686 HSPA5P11021 654 aaKnown RBP16.17■□□□□ 0.18
USP3-203ENST00000538686 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.16■□□□□ 0.18
USP3-203ENST00000538686 GOLGA6L3A6NEY3 463 aa16.16■□□□□ 0.18
USP3-203ENST00000538686 KDM5BQ9UGL1 1544 aa16.16■□□□□ 0.18
USP3-203ENST00000538686 TIAM1Q13009 1591 aa16.16■□□□□ 0.18
USP3-203ENST00000538686 CCDC7Q96M83 1385 aa16.15■□□□□ 0.18
USP3-203ENST00000538686 TAF7LQ5H9L4 462 aa16.15■□□□□ 0.18
USP3-203ENST00000538686 SMAP1Q8IYB5 467 aaPredicted RBP16.15■□□□□ 0.18
USP3-203ENST00000538686 POGKQ9P215 609 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms