RNA–Protein interactions for RNA: ENST00000531657.1

PPFIA1-219, Transcript of PTPRF interacting protein alpha 1, humanhuman

TSL 2

Gene PPFIA1, Length 3,036 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPFIA1-219ENST00000531657 ZNF777Q9ULD5 760 aaPredicted RBP13.92□□□□□ -0.18
PPFIA1-219ENST00000531657 HMGXB3Q12766 1538 aa13.9□□□□□ -0.18
PPFIA1-219ENST00000531657 CENPBP07199 599 aaPredicted RBP13.9□□□□□ -0.18
PPFIA1-219ENST00000531657 ACIN1Q9UKV3 1341 aaKnown RBP13.89□□□□□ -0.19
PPFIA1-219ENST00000531657 CCNB3Q8WWL7 1395 aa13.89□□□□□ -0.19
PPFIA1-219ENST00000531657 FOXD1Q16676 465 aa13.88□□□□□ -0.19
PPFIA1-219ENST00000531657 AQRO60306 1485 aaKnown RBP eCLIP13.86□□□□□ -0.191e-6■■□□□ 13.9
PPFIA1-219ENST00000531657 DDX10Q13206 875 aaKnown RBP13.86□□□□□ -0.19
PPFIA1-219ENST00000531657 KCNH8Q96L42 1107 aa13.86□□□□□ -0.19
PPFIA1-219ENST00000531657 POLR3GLQ9BT43 218 aa13.86□□□□□ -0.19
PPFIA1-219ENST00000531657 SENP3-EIF4A1A0A087X0R7 540 aa13.85□□□□□ -0.19
PPFIA1-219ENST00000531657 MTUS2Q5JR59 1369 aa13.85□□□□□ -0.19
PPFIA1-219ENST00000531657 PHLDB1Q86UU1 1377 aa13.85□□□□□ -0.19
PPFIA1-219ENST00000531657 POLA1P09884 1462 aaPredicted RBP13.84□□□□□ -0.19
PPFIA1-219ENST00000531657 DHX57Q6P158 1386 aaKnown RBP13.82□□□□□ -0.2
PPFIA1-219ENST00000531657 RAB3GAP2Q9H2M9 1393 aa13.82□□□□□ -0.2
PPFIA1-219ENST00000531657 ZNF326Q5BKZ1 582 aaKnown RBP13.82□□□□□ -0.2
PPFIA1-219ENST00000531657 TOPBP1Q92547 1522 aa13.8□□□□□ -0.2
PPFIA1-219ENST00000531657 CHMP7Q8WUX9 453 aaPredicted RBP13.8□□□□□ -0.2
PPFIA1-219ENST00000531657 PDS5BQ9NTI5 1447 aa13.78□□□□□ -0.2
PPFIA1-219ENST00000531657 BCANQ96GW7 911 aa13.77□□□□□ -0.21
PPFIA1-219ENST00000531657 BIVM-ERCC5R4GMW8 1640 aa13.76□□□□□ -0.21
PPFIA1-219ENST00000531657 URB2Q14146 1524 aaKnown RBP13.75□□□□□ -0.21
PPFIA1-219ENST00000531657 ZNF644Q9H582 1327 aaPredicted RBP13.73□□□□□ -0.21
PPFIA1-219ENST00000531657 ERCC6Q03468 1493 aa13.72□□□□□ -0.21
PPFIA1-219ENST00000531657 GAPVD1Q14C86 1478 aa13.71□□□□□ -0.22
PPFIA1-219ENST00000531657 ERICH3Q5RHP9 1530 aa13.7□□□□□ -0.22
PPFIA1-219ENST00000531657 ZNF608Q9ULD9 1512 aaPredicted RBP13.66□□□□□ -0.22
PPFIA1-219ENST00000531657 LRRC9Q6ZRR7 1453 aa13.66□□□□□ -0.22
PPFIA1-219ENST00000531657 FHAD1B1AJZ9 1412 aa13.64□□□□□ -0.23
PPFIA1-219ENST00000531657 SETD5Q9C0A6 1442 aa13.64□□□□□ -0.23
PPFIA1-219ENST00000531657 SENP3Q9H4L4 574 aaPredicted RBP13.64□□□□□ -0.23
PPFIA1-219ENST00000531657 TONSLQ96HA7 1378 aa13.62□□□□□ -0.23
PPFIA1-219ENST00000531657 PCF11O94913 1555 aaKnown RBP13.61□□□□□ -0.23
PPFIA1-219ENST00000531657 DNMBPQ6XZF7 1577 aa13.6□□□□□ -0.23
PPFIA1-219ENST00000531657 MYT1LQ9UL68 1186 aa13.6□□□□□ -0.23
PPFIA1-219ENST00000531657 RRBP1Q9P2E9 1410 aaKnown RBP13.59□□□□□ -0.23
PPFIA1-219ENST00000531657 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.58□□□□□ -0.233e-7■■□□□ 13.1
PPFIA1-219ENST00000531657 ABCA10Q8WWZ4 1543 aa13.58□□□□□ -0.24
PPFIA1-219ENST00000531657 KDM2AQ9Y2K7 1162 aa13.58□□□□□ -0.24
PPFIA1-219ENST00000531657 TIAM1Q13009 1591 aa13.56□□□□□ -0.24
PPFIA1-219ENST00000531657 SLC4A1APQ9BWU0 796 aaKnown RBP13.56□□□□□ -0.24
PPFIA1-219ENST00000531657 CFDP1Q9UEE9 299 aaPredicted RBP13.55□□□□□ -0.24
PPFIA1-219ENST00000531657 IRX6P78412 446 aaPredicted RBP13.55□□□□□ -0.24
PPFIA1-219ENST00000531657 CDK13Q14004 1512 aaKnown RBP13.55□□□□□ -0.24
PPFIA1-219ENST00000531657 PTPRKQ15262 1439 aa13.54□□□□□ -0.24
PPFIA1-219ENST00000531657 FMN1Q68DA7 1419 aa13.53□□□□□ -0.24
PPFIA1-219ENST00000531657 JPH4Q96JJ6 628 aa13.53□□□□□ -0.24
PPFIA1-219ENST00000531657 KIF21AQ7Z4S6 1674 aa13.51□□□□□ -0.25
PPFIA1-219ENST00000531657 FGD6Q6ZV73 1430 aa13.51□□□□□ -0.25
PPFIA1-219ENST00000531657 PPP1R15AO75807 674 aaPredicted RBP13.5□□□□□ -0.25
PPFIA1-219ENST00000531657 RGL3Q3MIN7 710 aa13.5□□□□□ -0.25
PPFIA1-219ENST00000531657 NCOA2Q15596 1464 aa13.5□□□□□ -0.25
PPFIA1-219ENST00000531657 HNRNPMP52272 730 aaKnown RBP eCLIP13.49□□□□□ -0.254e-11■■■■■ 33.2
PPFIA1-219ENST00000531657 CASKIN1Q8WXD9 1431 aa13.49□□□□□ -0.25
PPFIA1-219ENST00000531657 ANP32CO43423 234 aa13.48□□□□□ -0.25
PPFIA1-219ENST00000531657 MPHOSPH9Q99550 1183 aa13.48□□□□□ -0.25
PPFIA1-219ENST00000531657 CDK11AQ9UQ88 783 aaPredicted RBP13.47□□□□□ -0.25
PPFIA1-219ENST00000531657 SNAPC4Q5SXM2 1469 aa13.47□□□□□ -0.25
PPFIA1-219ENST00000531657 FAM9BQ8IZU0 186 aa13.46□□□□□ -0.25
PPFIA1-219ENST00000531657 L3MBTL2Q969R5 705 aa13.46□□□□□ -0.25
PPFIA1-219ENST00000531657 WDR97A6NE52 1622 aa13.45□□□□□ -0.26
PPFIA1-219ENST00000531657 PRG4Q92954 1404 aaPredicted RBP13.45□□□□□ -0.26
PPFIA1-219ENST00000531657 PLEKHD1A6NEE1 506 aa13.45□□□□□ -0.26
PPFIA1-219ENST00000531657 LAMC3Q9Y6N6 1575 aa13.44□□□□□ -0.26
PPFIA1-219ENST00000531657 CCDC18Q5T9S5 1454 aa13.44□□□□□ -0.26
PPFIA1-219ENST00000531657 SALL2Q9Y467 1007 aaPredicted RBP13.44□□□□□ -0.26
PPFIA1-219ENST00000531657 HSPA5P11021 654 aaKnown RBP13.43□□□□□ -0.26
PPFIA1-219ENST00000531657 PRDM2Q13029 1718 aa13.43□□□□□ -0.26
PPFIA1-219ENST00000531657 FKBP8Q14318 412 aa13.42□□□□□ -0.26
PPFIA1-219ENST00000531657 MRC2Q9UBG0 1479 aa13.42□□□□□ -0.26
PPFIA1-219ENST00000531657 MAPKBP1O60336 1514 aa13.42□□□□□ -0.26
PPFIA1-219ENST00000531657 PLB1Q6P1J6 1458 aa13.41□□□□□ -0.26
PPFIA1-219ENST00000531657 CLSPNQ9HAW4 1339 aa13.41□□□□□ -0.26
PPFIA1-219ENST00000531657 HNRNPUQ00839 825 aaKnown RBP eCLIP13.41□□□□□ -0.26
PPFIA1-219ENST00000531657 FYCO1Q9BQS8 1478 aa13.41□□□□□ -0.26
PPFIA1-219ENST00000531657 MYOM3Q5VTT5 1437 aa13.4□□□□□ -0.26
PPFIA1-219ENST00000531657 PKD2Q13563 968 aa13.39□□□□□ -0.27
PPFIA1-219ENST00000531657 GRIN2BQ13224 1484 aa13.39□□□□□ -0.27
PPFIA1-219ENST00000531657 MAGI3Q5TCQ9 1506 aa13.37□□□□□ -0.27
PPFIA1-219ENST00000531657 TSPY4P0CV99 314 aa13.36□□□□□ -0.27
PPFIA1-219ENST00000531657 TSPY10P0CW01 314 aa13.36□□□□□ -0.27
PPFIA1-219ENST00000531657 CCDC184Q52MB2 194 aa13.36□□□□□ -0.27
PPFIA1-219ENST00000531657 NAIPQ13075 1403 aa13.35□□□□□ -0.27
PPFIA1-219ENST00000531657 C11orf95C9JLR9 678 aaPredicted RBP13.35□□□□□ -0.27
PPFIA1-219ENST00000531657 NBPF8Q3BBV2 869 aa13.35□□□□□ -0.27
PPFIA1-219ENST00000531657 THOC2Q8NI27 1593 aaKnown RBP13.35□□□□□ -0.27
PPFIA1-219ENST00000531657 EPRSP07814 1512 aaKnown RBP13.34□□□□□ -0.27
PPFIA1-219ENST00000531657 EIF4G2P78344 907 aaKnown RBP eCLIP13.34□□□□□ -0.27
PPFIA1-219ENST00000531657 SUPT16HQ9Y5B9 1047 aaKnown RBP13.34□□□□□ -0.27
PPFIA1-219ENST00000531657 PELP1Q8IZL8 1130 aaKnown RBP13.33□□□□□ -0.28
PPFIA1-219ENST00000531657 DCAF11Q8TEB1 546 aa13.31□□□□□ -0.28
PPFIA1-219ENST00000531657 IQGAP2Q13576 1575 aa13.3□□□□□ -0.28
PPFIA1-219ENST00000531657 EFCAB5A4FU69 1503 aa13.3□□□□□ -0.28
PPFIA1-219ENST00000531657 NEFLP07196 543 aa13.29□□□□□ -0.28
PPFIA1-219ENST00000531657 CUL7Q14999 1698 aa13.29□□□□□ -0.28
PPFIA1-219ENST00000531657 MRS2Q9HD23 443 aa13.29□□□□□ -0.28
PPFIA1-219ENST00000531657 NUP155O75694 1391 aa13.28□□□□□ -0.28
PPFIA1-219ENST00000531657 ABCA5Q8WWZ7 1642 aa13.28□□□□□ -0.28
PPFIA1-219ENST00000531657 WASHC2AQ641Q2 1341 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms