RNA–Protein interactions for RNA: ENST00000521340.1

HMGN1P28-201, Transcript of high mobility group nucleosome binding domain 1 pseudogene 28, humanhuman

BASIC

Gene HMGN1P28, Length 364 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1P28-201ENST00000521340 MIER1Q8N108 512 aa8.67□□□□□ -1.02
HMGN1P28-201ENST00000521340 TSPYL2Q9H2G4 693 aaPredicted RBP8.64□□□□□ -1.03
HMGN1P28-201ENST00000521340 CCDC61Q9Y6R9 512 aa8.61□□□□□ -1.03
HMGN1P28-201ENST00000521340 RASEFQ8IZ41 740 aa8.6□□□□□ -1.03
HMGN1P28-201ENST00000521340 MS4A3Q96HJ5 214 aa8.6□□□□□ -1.03
HMGN1P28-201ENST00000521340 PKD2Q13563 968 aa8.59□□□□□ -1.03
HMGN1P28-201ENST00000521340 PELP1Q8IZL8 1130 aaKnown RBP8.59□□□□□ -1.03
HMGN1P28-201ENST00000521340 PLEKHG5O94827 1062 aa8.58□□□□□ -1.04
HMGN1P28-201ENST00000521340 PLCD3Q8N3E9 789 aa8.58□□□□□ -1.04
HMGN1P28-201ENST00000521340 KIF12Q96FN5 646 aa8.56□□□□□ -1.04
HMGN1P28-201ENST00000521340 NUBP1P53384 320 aa8.54□□□□□ -1.04
HMGN1P28-201ENST00000521340 POTEB2H3BUK9 544 aa8.53□□□□□ -1.04
HMGN1P28-201ENST00000521340 ATMINO43313 823 aaPredicted RBP8.53□□□□□ -1.04
HMGN1P28-201ENST00000521340 ASTLQ6HA08 431 aaPredicted RBP8.53□□□□□ -1.04
HMGN1P28-201ENST00000521340 MAP3K13O43283 966 aa8.51□□□□□ -1.05
HMGN1P28-201ENST00000521340 TRPC6Q9Y210 931 aa8.51□□□□□ -1.05
HMGN1P28-201ENST00000521340 PLCB2Q00722 1185 aa8.49□□□□□ -1.05
HMGN1P28-201ENST00000521340 ZBTB47Q9UFB7 747 aaPredicted RBP8.48□□□□□ -1.05
HMGN1P28-201ENST00000521340 ATN1P54259 1190 aaPredicted RBP8.47□□□□□ -1.05
HMGN1P28-201ENST00000521340 OTUD5Q96G74 571 aa8.46□□□□□ -1.06
HMGN1P28-201ENST00000521340 BMP2KQ9NSY1 1161 aaPredicted RBP8.46□□□□□ -1.06
HMGN1P28-201ENST00000521340 METRNQ9UJH8 293 aa8.45□□□□□ -1.06
HMGN1P28-201ENST00000521340 POTEJP0CG39 1038 aa8.43□□□□□ -1.06
HMGN1P28-201ENST00000521340 C7P10643 843 aa8.43□□□□□ -1.06
HMGN1P28-201ENST00000521340 SLC39A7Q92504 469 aa8.43□□□□□ -1.06
HMGN1P28-201ENST00000521340 TIE1P35590 1138 aa8.41□□□□□ -1.06
HMGN1P28-201ENST00000521340 SPOCK2Q92563 424 aa8.41□□□□□ -1.06
HMGN1P28-201ENST00000521340 FAM212AQ96EL1 285 aa8.4□□□□□ -1.06
HMGN1P28-201ENST00000521340 SGIP1Q9BQI5 828 aa8.4□□□□□ -1.06
HMGN1P28-201ENST00000521340 PCDHB13Q9Y5F0 798 aa8.4□□□□□ -1.06
HMGN1P28-201ENST00000521340 POTEFA5A3E0 1075 aa8.39□□□□□ -1.07
HMGN1P28-201ENST00000521340 TTLL13PA6NNM8 815 aa8.39□□□□□ -1.07
HMGN1P28-201ENST00000521340 IFNL1Q8IU54 200 aa8.39□□□□□ -1.07
HMGN1P28-201ENST00000521340 DCAF8Q5TAQ9 597 aa8.38□□□□□ -1.07
HMGN1P28-201ENST00000521340 PYGBP11216 843 aa8.34□□□□□ -1.07
HMGN1P28-201ENST00000521340 KLHL34Q8N239 644 aa8.33□□□□□ -1.08
HMGN1P28-201ENST00000521340 COLQQ9Y215 455 aaPredicted RBP8.33□□□□□ -1.08
HMGN1P28-201ENST00000521340 RGL2O15211 777 aa8.32□□□□□ -1.08
HMGN1P28-201ENST00000521340 TRIM35Q9UPQ4 493 aa8.32□□□□□ -1.08
HMGN1P28-201ENST00000521340 ECM2O94769 699 aaPredicted RBP8.3□□□□□ -1.08
HMGN1P28-201ENST00000521340 TMEM106CQ9BVX2 250 aa8.3□□□□□ -1.08
HMGN1P28-201ENST00000521340 PCDHB8Q9UN66 801 aa8.29□□□□□ -1.08
HMGN1P28-201ENST00000521340 BBXQ8WY36 941 aaPredicted RBP8.28□□□□□ -1.08
HMGN1P28-201ENST00000521340 IER5LQ5T953 404 aa8.27□□□□□ -1.09
HMGN1P28-201ENST00000521340 MAMSTRQ6ZN01 415 aa8.27□□□□□ -1.09
HMGN1P28-201ENST00000521340 SEC24BO95487 1268 aa8.26□□□□□ -1.09
HMGN1P28-201ENST00000521340 GSE1Q14687 1217 aa8.26□□□□□ -1.09
HMGN1P28-201ENST00000521340 KDM2AQ9Y2K7 1162 aa8.26□□□□□ -1.09
HMGN1P28-201ENST00000521340 VSIG10Q8N0Z9 540 aa8.25□□□□□ -1.09
HMGN1P28-201ENST00000521340 DCAF8L2P0C7V8 631 aa8.24□□□□□ -1.09
HMGN1P28-201ENST00000521340 HAP1P54257 671 aaPredicted RBP8.24□□□□□ -1.09
HMGN1P28-201ENST00000521340 CHRM1P11229 460 aaPredicted RBP8.23□□□□□ -1.09
HMGN1P28-201ENST00000521340 SCUBE2Q9NQ36 999 aa8.22□□□□□ -1.09
HMGN1P28-201ENST00000521340 IRX5P78411 483 aaPredicted RBP8.21□□□□□ -1.1
HMGN1P28-201ENST00000521340 LCE2DQ5TA82 110 aaPredicted RBP8.19□□□□□ -1.1
HMGN1P28-201ENST00000521340 RNF25Q96BH1 459 aaPredicted RBP8.19□□□□□ -1.1
HMGN1P28-201ENST00000521340 ZNF467Q7Z7K2 595 aaPredicted RBP8.18□□□□□ -1.1
HMGN1P28-201ENST00000521340 PLCG2P16885 1265 aa8.17□□□□□ -1.1
HMGN1P28-201ENST00000521340 DNAJC5Q9H3Z4 198 aa8.17□□□□□ -1.1
HMGN1P28-201ENST00000521340 POTEMA6NI47 508 aa8.16□□□□□ -1.1
HMGN1P28-201ENST00000521340 POTEGQ6S5H5 508 aa8.16□□□□□ -1.1
HMGN1P28-201ENST00000521340 PAXIP1Q6ZW49 1069 aaPredicted RBP8.16□□□□□ -1.1
HMGN1P28-201ENST00000521340 CIZ1Q9ULV3 898 aaPredicted RBP8.16□□□□□ -1.1
HMGN1P28-201ENST00000521340 FAM163AQ96GL9 167 aaPredicted RBP8.15□□□□□ -1.1
HMGN1P28-201ENST00000521340 OCEL1Q9H607 264 aa8.15□□□□□ -1.1
HMGN1P28-201ENST00000521340 PSEN1P49768 467 aa8.14□□□□□ -1.11
HMGN1P28-201ENST00000521340 TSHZ2Q9NRE2 1034 aa8.14□□□□□ -1.11
HMGN1P28-201ENST00000521340 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.14□□□□□ -1.11
HMGN1P28-201ENST00000521340 TRIM41Q8WV44 630 aa8.12□□□□□ -1.11
HMGN1P28-201ENST00000521340 HS6ST3Q8IZP7 471 aa8.11□□□□□ -1.11
HMGN1P28-201ENST00000521340 PDCD7Q8N8D1 485 aaKnown RBP8.11□□□□□ -1.11
HMGN1P28-201ENST00000521340 CHGAP10645 457 aaKnown RBP8.1□□□□□ -1.11
HMGN1P28-201ENST00000521340 SPRYD3Q8NCJ5 442 aa8.1□□□□□ -1.11
HMGN1P28-201ENST00000521340 SLAIN1Q8ND83 568 aa8.1□□□□□ -1.11
HMGN1P28-201ENST00000521340 PDAP1Q13442 181 aaKnown RBP8.09□□□□□ -1.11
HMGN1P28-201ENST00000521340 NKX1-1Q15270 411 aaPredicted RBP8.09□□□□□ -1.11
HMGN1P28-201ENST00000521340 BCANQ96GW7 911 aa8.09□□□□□ -1.11
HMGN1P28-201ENST00000521340 CFAP44Q96MT7 982 aa8.09□□□□□ -1.11
HMGN1P28-201ENST00000521340 MKRN3Q13064 507 aaKnown RBP8.07□□□□□ -1.12
HMGN1P28-201ENST00000521340 PRKCSHP14314 528 aaPredicted RBP8.06□□□□□ -1.12
HMGN1P28-201ENST00000521340 ILDR1Q86SU0 546 aaPredicted RBP8.06□□□□□ -1.12
HMGN1P28-201ENST00000521340 PLSCR2Q9NRY7 297 aa8.06□□□□□ -1.12
HMGN1P28-201ENST00000521340 GOLGA2Q08379 1002 aa8.05□□□□□ -1.12
HMGN1P28-201ENST00000521340 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.05□□□□□ -1.12
HMGN1P28-201ENST00000521340 CABP2Q9NPB3 220 aa8.04□□□□□ -1.12
HMGN1P28-201ENST00000521340 TAOK2Q9UL54 1235 aa8.04□□□□□ -1.12
HMGN1P28-201ENST00000521340 DPY19L2Q6NUT2 758 aa8.03□□□□□ -1.12
HMGN1P28-201ENST00000521340 GTPBP6O43824 516 aaPredicted RBP8.02□□□□□ -1.13
HMGN1P28-201ENST00000521340 ST18O60284 1047 aa8.02□□□□□ -1.13
HMGN1P28-201ENST00000521340 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.02□□□□□ -1.13
HMGN1P28-201ENST00000521340 RIOK3O14730 519 aaKnown RBP8□□□□□ -1.13
HMGN1P28-201ENST00000521340 L3MBTL3Q96JM7 780 aaPredicted RBP8□□□□□ -1.13
HMGN1P28-201ENST00000521340 PCDH10Q9P2E7 1040 aa8□□□□□ -1.13
HMGN1P28-201ENST00000521340 EFCAB3Q8N7B9 438 aa7.96□□□□□ -1.14
HMGN1P28-201ENST00000521340 C3orf67Q6ZVT6 689 aa7.95□□□□□ -1.14
HMGN1P28-201ENST00000521340 VGFO15240 615 aaPredicted RBP7.94□□□□□ -1.14
HMGN1P28-201ENST00000521340 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.93□□□□□ -1.14
HMGN1P28-201ENST00000521340 ZFP91Q96JP5 570 aaPredicted RBP7.93□□□□□ -1.14
HMGN1P28-201ENST00000521340 BOLA1Q9Y3E2 137 aa7.93□□□□□ -1.14
HMGN1P28-201ENST00000521340 SNPHO15079 494 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms