RNA–Protein interactions for RNA: ENST00000521340.1

HMGN1P28-201, Transcript of high mobility group nucleosome binding domain 1 pseudogene 28, humanhuman

BASIC

Gene HMGN1P28, Length 364 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1P28-201ENST00000521340 AEBP2Q6ZN18 517 aaPredicted RBP17.53■□□□□ 0.4
HMGN1P28-201ENST00000521340 CHIC1Q5VXU3 224 aa16.64■□□□□ 0.25
HMGN1P28-201ENST00000521340 SENP3Q9H4L4 574 aaPredicted RBP14.85□□□□□ -0.03
HMGN1P28-201ENST00000521340 PHF23Q9BUL5 403 aaPredicted RBP14.72□□□□□ -0.05
HMGN1P28-201ENST00000521340 FOXD1Q16676 465 aa13.9□□□□□ -0.18
HMGN1P28-201ENST00000521340 PLPPR3Q6T4P5 718 aa13.28□□□□□ -0.28
HMGN1P28-201ENST00000521340 PPP6R1Q9UPN7 881 aa13.07□□□□□ -0.32
HMGN1P28-201ENST00000521340 ADRA2BP18089 450 aa13.01□□□□□ -0.33
HMGN1P28-201ENST00000521340 PIAS4Q8N2W9 510 aaPredicted RBP12.95□□□□□ -0.34
HMGN1P28-201ENST00000521340 MSH5O43196 834 aa12.92□□□□□ -0.34
HMGN1P28-201ENST00000521340 POTEDQ86YR6 584 aa12.6□□□□□ -0.39
HMGN1P28-201ENST00000521340 MAPK8IP2Q13387 824 aaPredicted RBP11.96□□□□□ -0.49
HMGN1P28-201ENST00000521340 DMRT2Q9Y5R5 561 aa11.82□□□□□ -0.52
HMGN1P28-201ENST00000521340 SCAF1Q9H7N4 1312 aaKnown RBP11.81□□□□□ -0.52
HMGN1P28-201ENST00000521340 PPP4R3CPQ6ZMV5 832 aa11.68□□□□□ -0.54
HMGN1P28-201ENST00000521340 CNKSR2Q8WXI2 1034 aa11.43□□□□□ -0.58
HMGN1P28-201ENST00000521340 HOXD11P31277 338 aaPredicted RBP11.41□□□□□ -0.58
HMGN1P28-201ENST00000521340 RNF216Q9NWF9 866 aaPredicted RBP11.31□□□□□ -0.6
HMGN1P28-201ENST00000521340 DCAF8L1A6NGE4 600 aa11.29□□□□□ -0.6
HMGN1P28-201ENST00000521340 NCBP3Q53F19 620 aaKnown RBP11.19□□□□□ -0.62
HMGN1P28-201ENST00000521340 NPM3O75607 178 aaKnown RBP11.09□□□□□ -0.63
HMGN1P28-201ENST00000521340 CACNB1Q02641 598 aaPredicted RBP11.08□□□□□ -0.64
HMGN1P28-201ENST00000521340 RNF39Q9H2S5 420 aa11.08□□□□□ -0.64
HMGN1P28-201ENST00000521340 KCNA4P22459 653 aa10.97□□□□□ -0.65
HMGN1P28-201ENST00000521340 DNAJC5BQ9UF47 199 aa10.97□□□□□ -0.65
HMGN1P28-201ENST00000521340 C1QBPQ07021 282 aaKnown RBP10.88□□□□□ -0.67
HMGN1P28-201ENST00000521340 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.83□□□□□ -0.68
HMGN1P28-201ENST00000521340 U3KPZ7 1027 aaPredicted RBP10.65□□□□□ -0.7
HMGN1P28-201ENST00000521340 SLC4A2P04920 1241 aa10.61□□□□□ -0.71
HMGN1P28-201ENST00000521340 EHMT2Q96KQ7 1210 aa10.56□□□□□ -0.72
HMGN1P28-201ENST00000521340 SPINK5Q9NQ38 1064 aaPredicted RBP10.5□□□□□ -0.73
HMGN1P28-201ENST00000521340 CSRNP3Q8WYN3 585 aa10.43□□□□□ -0.74
HMGN1P28-201ENST00000521340 CAPN15O75808 1086 aa10.42□□□□□ -0.74
HMGN1P28-201ENST00000521340 SLC4A1APQ9BWU0 796 aaKnown RBP10.42□□□□□ -0.74
HMGN1P28-201ENST00000521340 DSG3P32926 999 aa10.39□□□□□ -0.75
HMGN1P28-201ENST00000521340 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.28□□□□□ -0.76
HMGN1P28-201ENST00000521340 TRHP20396 242 aaPredicted RBP10.28□□□□□ -0.76
HMGN1P28-201ENST00000521340 HNRNPUL2Q1KMD3 747 aaKnown RBP10.28□□□□□ -0.76
HMGN1P28-201ENST00000521340 APLP2Q06481 763 aa10.25□□□□□ -0.77
HMGN1P28-201ENST00000521340 SAMD1Q6SPF0 538 aaPredicted RBP10.24□□□□□ -0.77
HMGN1P28-201ENST00000521340 ZNF219Q9P2Y4 722 aaPredicted RBP10.22□□□□□ -0.77
HMGN1P28-201ENST00000521340 ABCB7O75027 752 aa10.21□□□□□ -0.77
HMGN1P28-201ENST00000521340 MYCNP04198 464 aaPredicted RBP10.21□□□□□ -0.77
HMGN1P28-201ENST00000521340 ZBTB22O15209 634 aa10.19□□□□□ -0.78
HMGN1P28-201ENST00000521340 FOXD4L1Q9NU39 408 aa10.14□□□□□ -0.79
HMGN1P28-201ENST00000521340 ATF5Q9Y2D1 282 aaPredicted RBP10.06□□□□□ -0.8
HMGN1P28-201ENST00000521340 POLA2Q14181 598 aa10.03□□□□□ -0.8
HMGN1P28-201ENST00000521340 POTEHQ6S545 545 aa9.86□□□□□ -0.83
HMGN1P28-201ENST00000521340 RBM42Q9BTD8 480 aaKnown RBP9.84□□□□□ -0.83
HMGN1P28-201ENST00000521340 ATXN8OSP0DMR3 200 aa9.82□□□□□ -0.84
HMGN1P28-201ENST00000521340 ZBTB12Q9Y330 459 aaPredicted RBP9.76□□□□□ -0.85
HMGN1P28-201ENST00000521340 OSCARQ8IYS5 282 aa9.7□□□□□ -0.86
HMGN1P28-201ENST00000521340 AKT1S1Q96B36 256 aa9.66□□□□□ -0.86
HMGN1P28-201ENST00000521340 CHRDL2Q6WN34 429 aa9.65□□□□□ -0.86
HMGN1P28-201ENST00000521340 REM2Q8IYK8 340 aaPredicted RBP9.6□□□□□ -0.87
HMGN1P28-201ENST00000521340 MKRN4PQ13434 485 aaPredicted RBP9.58□□□□□ -0.88
HMGN1P28-201ENST00000521340 FBLN2P98095 1184 aa9.55□□□□□ -0.88
HMGN1P28-201ENST00000521340 SPDYE2BA6NHP3 402 aa9.49□□□□□ -0.89
HMGN1P28-201ENST00000521340 PITPNM1O00562 1244 aa9.49□□□□□ -0.89
HMGN1P28-201ENST00000521340 SPDYE6P0CI01 402 aa9.49□□□□□ -0.89
HMGN1P28-201ENST00000521340 SPDYE2Q495Y8 402 aa9.49□□□□□ -0.89
HMGN1P28-201ENST00000521340 PIP4P2Q8N4L2 257 aa9.46□□□□□ -0.9
HMGN1P28-201ENST00000521340 FXR2P51116 673 aaKnown RBP eCLIP9.41□□□□□ -0.9
HMGN1P28-201ENST00000521340 SSUH2Q9Y2M2 353 aa9.41□□□□□ -0.9
HMGN1P28-201ENST00000521340 ZNF692Q9BU19 519 aaPredicted RBP9.4□□□□□ -0.9
HMGN1P28-201ENST00000521340 SPDYE1Q8NFV5 336 aaPredicted RBP9.31□□□□□ -0.92
HMGN1P28-201ENST00000521340 CLEC11AQ9Y240 323 aa9.3□□□□□ -0.92
HMGN1P28-201ENST00000521340 PABPN1Q86U42 306 aaKnown RBP eCLIP9.28□□□□□ -0.92
HMGN1P28-201ENST00000521340 FKBP8Q14318 412 aa9.25□□□□□ -0.93
HMGN1P28-201ENST00000521340 SP7Q8TDD2 431 aaPredicted RBP9.25□□□□□ -0.93
HMGN1P28-201ENST00000521340 HAX1O00165 279 aa9.24□□□□□ -0.93
HMGN1P28-201ENST00000521340 RTN4Q9NQC3 1192 aaKnown RBP9.24□□□□□ -0.93
HMGN1P28-201ENST00000521340 PRKAR2AP13861 404 aaKnown RBP9.23□□□□□ -0.93
HMGN1P28-201ENST00000521340 EVX2Q03828 476 aa9.22□□□□□ -0.93
HMGN1P28-201ENST00000521340 CHADLQ6NUI6 762 aa9.17□□□□□ -0.94
HMGN1P28-201ENST00000521340 PRR29P0C7W0 189 aa9.16□□□□□ -0.94
HMGN1P28-201ENST00000521340 AMER1Q5JTC6 1135 aaPredicted RBP9.14□□□□□ -0.95
HMGN1P28-201ENST00000521340 C19orf67A6NJJ6 358 aa9.11□□□□□ -0.95
HMGN1P28-201ENST00000521340 SPDYE4A6NLX3 237 aa9.1□□□□□ -0.95
HMGN1P28-201ENST00000521340 FARP1Q9Y4F1 1045 aaPredicted RBP9.02□□□□□ -0.97
HMGN1P28-201ENST00000521340 CREBZFQ9NS37 354 aa8.99□□□□□ -0.97
HMGN1P28-201ENST00000521340 STAG3Q9UJ98 1225 aa8.98□□□□□ -0.97
HMGN1P28-201ENST00000521340 GABBR2O75899 941 aa8.97□□□□□ -0.97
HMGN1P28-201ENST00000521340 PROM2Q8N271 834 aa8.96□□□□□ -0.98
HMGN1P28-201ENST00000521340 SLC24A1O60721 1099 aa8.94□□□□□ -0.98
HMGN1P28-201ENST00000521340 CD44P16070 742 aaKnown RBP8.93□□□□□ -0.98
HMGN1P28-201ENST00000521340 MNX1P50219 401 aaPredicted RBP8.86□□□□□ -0.99
HMGN1P28-201ENST00000521340 POTEIP0CG38 1075 aa8.82□□□□□ -1
HMGN1P28-201ENST00000521340 ZRANB1Q9UGI0 708 aa8.82□□□□□ -1
HMGN1P28-201ENST00000521340 ZNF579Q8NAF0 562 aaKnown RBP8.8□□□□□ -1
HMGN1P28-201ENST00000521340 CLCN6P51797 869 aa8.76□□□□□ -1.01
HMGN1P28-201ENST00000521340 NPM1P06748 294 aaKnown RBP eCLIP8.75□□□□□ -1.01
HMGN1P28-201ENST00000521340 FBXO3Q9UK99 471 aa8.75□□□□□ -1.01
HMGN1P28-201ENST00000521340 PHF12Q96QT6 1004 aa8.73□□□□□ -1.01
HMGN1P28-201ENST00000521340 GALR2O43603 387 aaPredicted RBP8.72□□□□□ -1.01
HMGN1P28-201ENST00000521340 VASPP50552 380 aaPredicted RBP8.71□□□□□ -1.02
HMGN1P28-201ENST00000521340 PAK3O75914 559 aaPredicted RBP8.7□□□□□ -1.02
HMGN1P28-201ENST00000521340 IFNLR1Q8IU57 520 aaPredicted RBP8.7□□□□□ -1.02
HMGN1P28-201ENST00000521340 LHX8Q68G74 356 aa8.69□□□□□ -1.02
HMGN1P28-201ENST00000521340 DCBLD2Q96PD2 775 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 131.3 ms