RNA–Protein interactions for RNA: ENST00000519253.5

PCM1-212, Transcript of pericentriolar material 1, humanhuman

TSL 1 (best) BASIC

Gene PCM1, Length 6,443 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCM1-212ENST00000519253 SIN3AQ96ST3 1273 aa11.54□□□□□ -0.56
PCM1-212ENST00000519253 NBR1Q14596 966 aa11.53□□□□□ -0.56
PCM1-212ENST00000519253 KANK4Q5T7N3 995 aaPredicted RBP11.53□□□□□ -0.56
PCM1-212ENST00000519253 SETD5Q9C0A6 1442 aa11.53□□□□□ -0.56
PCM1-212ENST00000519253 ZNF326Q5BKZ1 582 aaKnown RBP11.5□□□□□ -0.57
PCM1-212ENST00000519253 MTUS2Q5JR59 1369 aa11.5□□□□□ -0.57
PCM1-212ENST00000519253 RAB3GAP2Q9H2M9 1393 aa11.5□□□□□ -0.57
PCM1-212ENST00000519253 NPM2Q86SE8 214 aaKnown RBP11.49□□□□□ -0.57
PCM1-212ENST00000519253 RUSC2Q8N2Y8 1516 aa11.49□□□□□ -0.57
PCM1-212ENST00000519253 NOP58Q9Y2X3 529 aaKnown RBP11.47□□□□□ -0.57
PCM1-212ENST00000519253 FHAD1B1AJZ9 1412 aa11.46□□□□□ -0.57
PCM1-212ENST00000519253 PPP1R15AO75807 674 aaPredicted RBP11.46□□□□□ -0.58
PCM1-212ENST00000519253 RAPGEF2Q9Y4G8 1499 aa11.45□□□□□ -0.58
PCM1-212ENST00000519253 TMC1Q8TDI8 760 aa11.45□□□□□ -0.58
PCM1-212ENST00000519253 DEKP35659 375 aaKnown RBP11.43□□□□□ -0.58
PCM1-212ENST00000519253 FANCIQ9NVI1 1328 aa11.42□□□□□ -0.58
PCM1-212ENST00000519253 KCNH8Q96L42 1107 aa11.42□□□□□ -0.58
PCM1-212ENST00000519253 CHIC2Q9UKJ5 165 aa11.41□□□□□ -0.58
PCM1-212ENST00000519253 B4GALNT3Q6L9W6 998 aa11.4□□□□□ -0.59
PCM1-212ENST00000519253 PPM1GO15355 546 aaPredicted RBP11.39□□□□□ -0.59
PCM1-212ENST00000519253 SMARCA2P51531 1590 aa11.39□□□□□ -0.59
PCM1-212ENST00000519253 SMARCA4P51532 1647 aa11.38□□□□□ -0.59
PCM1-212ENST00000519253 DDRGK1Q96HY6 314 aa11.38□□□□□ -0.59
PCM1-212ENST00000519253 RRP7BPQ9NSQ0 103 aa11.36□□□□□ -0.59
PCM1-212ENST00000519253 EIF5BO60841 1220 aaKnown RBP11.36□□□□□ -0.59
PCM1-212ENST00000519253 CARMIL1Q5VZK9 1371 aa11.35□□□□□ -0.59
PCM1-212ENST00000519253 KIF21BO75037 1637 aa11.35□□□□□ -0.59
PCM1-212ENST00000519253 ARHGAP35Q9NRY4 1499 aa11.34□□□□□ -0.59
PCM1-212ENST00000519253 HSPA5P11021 654 aaKnown RBP11.33□□□□□ -0.6
PCM1-212ENST00000519253 SLC4A1APQ9BWU0 796 aaKnown RBP11.32□□□□□ -0.6
PCM1-212ENST00000519253 RRBP1Q9P2E9 1410 aaKnown RBP11.32□□□□□ -0.6
PCM1-212ENST00000519253 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.31□□□□□ -0.6
PCM1-212ENST00000519253 CUX2O14529 1486 aa11.3□□□□□ -0.6
PCM1-212ENST00000519253 ARID3CA6NKF2 412 aa11.29□□□□□ -0.6
PCM1-212ENST00000519253 NEFMP07197 916 aa11.29□□□□□ -0.6
PCM1-212ENST00000519253 CANXP27824 592 aaKnown RBP11.28□□□□□ -0.6
PCM1-212ENST00000519253 SALL2Q9Y467 1007 aaPredicted RBP11.28□□□□□ -0.6
PCM1-212ENST00000519253 IPO9Q96P70 1041 aaKnown RBP11.28□□□□□ -0.6
PCM1-212ENST00000519253 GLIPR1L2Q4G1C9 344 aa11.27□□□□□ -0.61
PCM1-212ENST00000519253 ZNF777Q9ULD5 760 aaPredicted RBP11.27□□□□□ -0.61
PCM1-212ENST00000519253 UPF2Q9HAU5 1272 aaKnown RBP11.26□□□□□ -0.61
PCM1-212ENST00000519253 FMN1Q68DA7 1419 aa11.25□□□□□ -0.61
PCM1-212ENST00000519253 ZBED9Q6R2W3 1325 aa11.24□□□□□ -0.61
PCM1-212ENST00000519253 TCERG1O14776 1098 aaKnown RBP11.24□□□□□ -0.61
PCM1-212ENST00000519253 LAS1LQ9Y4W2 734 aaKnown RBP11.24□□□□□ -0.61
PCM1-212ENST00000519253 ATAD2BQ9ULI0 1458 aa11.24□□□□□ -0.61
PCM1-212ENST00000519253 NUDCQ9Y266 331 aa11.24□□□□□ -0.61
PCM1-212ENST00000519253 ERICH3Q5RHP9 1530 aa11.23□□□□□ -0.61
PCM1-212ENST00000519253 PRKRIP1Q9H875 184 aaPredicted RBP11.21□□□□□ -0.61
PCM1-212ENST00000519253 USP35Q9P2H5 1018 aa11.21□□□□□ -0.61
PCM1-212ENST00000519253 WDR43Q15061 677 aaKnown RBP eCLIP11.2□□□□□ -0.62
PCM1-212ENST00000519253 BECN1Q14457 450 aa11.19□□□□□ -0.62
PCM1-212ENST00000519253 CARD11Q9BXL7 1154 aa11.19□□□□□ -0.62
PCM1-212ENST00000519253 ARAP1Q96P48 1450 aa11.19□□□□□ -0.62
PCM1-212ENST00000519253 TSPY4P0CV99 314 aa11.18□□□□□ -0.62
PCM1-212ENST00000519253 TSPY10P0CW01 314 aa11.18□□□□□ -0.62
PCM1-212ENST00000519253 KDM2AQ9Y2K7 1162 aa11.18□□□□□ -0.62
PCM1-212ENST00000519253 RTN4Q9NQC3 1192 aaKnown RBP11.18□□□□□ -0.62
PCM1-212ENST00000519253 PRXQ9BXM0 1461 aa11.18□□□□□ -0.62
PCM1-212ENST00000519253 MPHOSPH9Q99550 1183 aa11.18□□□□□ -0.62
PCM1-212ENST00000519253 L3MBTL2Q969R5 705 aa11.18□□□□□ -0.62
PCM1-212ENST00000519253 SYNJ1O43426 1573 aa11.17□□□□□ -0.62
PCM1-212ENST00000519253 PHLDB1Q86UU1 1377 aa11.16□□□□□ -0.62
PCM1-212ENST00000519253 CCDC18Q5T9S5 1454 aa11.16□□□□□ -0.62
PCM1-212ENST00000519253 LRRC9Q6ZRR7 1453 aa11.15□□□□□ -0.62
PCM1-212ENST00000519253 UACAQ9BZF9 1416 aa11.15□□□□□ -0.63
PCM1-212ENST00000519253 RCAN3Q9UKA8 241 aa11.14□□□□□ -0.63
PCM1-212ENST00000519253 RALBP1Q15311 655 aa11.14□□□□□ -0.63
PCM1-212ENST00000519253 ANP32BQ92688 251 aaKnown RBP11.14□□□□□ -0.63
PCM1-212ENST00000519253 PDE3BQ13370 1112 aa11.13□□□□□ -0.63
PCM1-212ENST00000519253 SENP3-EIF4A1A0A087X0R7 540 aa11.13□□□□□ -0.63
PCM1-212ENST00000519253 FHOD3Q2V2M9 1422 aa11.13□□□□□ -0.63
PCM1-212ENST00000519253 ROCK2O75116 1388 aaKnown RBP11.13□□□□□ -0.63
PCM1-212ENST00000519253 CFDP1Q9UEE9 299 aaPredicted RBP11.12□□□□□ -0.63
PCM1-212ENST00000519253 IGF1RP08069 1367 aa11.12□□□□□ -0.63
PCM1-212ENST00000519253 CNTLNQ9NXG0 1405 aa11.11□□□□□ -0.63
PCM1-212ENST00000519253 MSH5O43196 834 aa11.1□□□□□ -0.63
PCM1-212ENST00000519253 FGD6Q6ZV73 1430 aa11.1□□□□□ -0.63
PCM1-212ENST00000519253 MS4A1P11836 297 aa11.1□□□□□ -0.63
PCM1-212ENST00000519253 WASHC2AQ641Q2 1341 aa11.09□□□□□ -0.63
PCM1-212ENST00000519253 CCDC7Q96M83 1385 aa11.09□□□□□ -0.63
PCM1-212ENST00000519253 WDR97A6NE52 1622 aa11.08□□□□□ -0.64
PCM1-212ENST00000519253 EIF4G1Q04637 1599 aaKnown RBP11.08□□□□□ -0.64
PCM1-212ENST00000519253 FBLN2P98095 1184 aa11.08□□□□□ -0.64
PCM1-212ENST00000519253 FOXD1Q16676 465 aa11.08□□□□□ -0.64
PCM1-212ENST00000519253 CDCA8Q53HL2 280 aa11.08□□□□□ -0.64
PCM1-212ENST00000519253 PDE4AP27815 886 aa11.08□□□□□ -0.64
PCM1-212ENST00000519253 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.08□□□□□ -0.64
PCM1-212ENST00000519253 HSP90AA1P07900 732 aaKnown RBP11.07□□□□□ -0.64
PCM1-212ENST00000519253 KTN1Q86UP2 1357 aaKnown RBP11.07□□□□□ -0.64
PCM1-212ENST00000519253 KNSTRNQ9Y448 316 aa11.07□□□□□ -0.64
PCM1-212ENST00000519253 TOP2BQ02880 1626 aa11.06□□□□□ -0.64
PCM1-212ENST00000519253 RGS3P49796 1198 aa11.06□□□□□ -0.64
PCM1-212ENST00000519253 NLRP13Q86W25 1043 aa11.06□□□□□ -0.64
PCM1-212ENST00000519253 L1TD1Q5T7N2 865 aaKnown RBP11.06□□□□□ -0.64
PCM1-212ENST00000519253 CADPSQ9ULU8 1353 aa11.05□□□□□ -0.64
PCM1-212ENST00000519253 RRP1P56182 461 aaKnown RBP11.05□□□□□ -0.64
PCM1-212ENST00000519253 ARID4BQ4LE39 1312 aaPredicted RBP11.04□□□□□ -0.64
PCM1-212ENST00000519253 KIF15Q9NS87 1388 aa11.04□□□□□ -0.64
PCM1-212ENST00000519253 PLEKHD1A6NEE1 506 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms