RNA–Protein interactions for RNA: ENST00000519253.5

PCM1-212, Transcript of pericentriolar material 1, humanhuman

TSL 1 (best) BASIC

Gene PCM1, Length 6,443 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCM1-212ENST00000519253 NISCHQ9Y2I1 1504 aa15.18■□□□□ 0.02
PCM1-212ENST00000519253 SUPT5HO00267 1087 aaKnown RBP14.08□□□□□ -0.15
PCM1-212ENST00000519253 SHROOM4Q9ULL8 1493 aa13.9□□□□□ -0.18
PCM1-212ENST00000519253 DCAF8L2P0C7V8 631 aa13.9□□□□□ -0.18
PCM1-212ENST00000519253 PCGF6Q9BYE7 350 aa13.67□□□□□ -0.22
PCM1-212ENST00000519253 HRCP23327 699 aa13.61□□□□□ -0.23
PCM1-212ENST00000519253 PELP1Q8IZL8 1130 aaKnown RBP13.57□□□□□ -0.24
PCM1-212ENST00000519253 ZEB1P37275 1124 aaPredicted RBP13.47□□□□□ -0.25
PCM1-212ENST00000519253 CHIC1Q5VXU3 224 aa13.34□□□□□ -0.27
PCM1-212ENST00000519253 TRIM26Q12899 539 aaPredicted RBP13.27□□□□□ -0.29
PCM1-212ENST00000519253 MYT1Q01538 1121 aa13.22□□□□□ -0.29
PCM1-212ENST00000519253 CENPBP07199 599 aaPredicted RBP13.18□□□□□ -0.3
PCM1-212ENST00000519253 PPARGC1BQ86YN6 1023 aaKnown RBP13.16□□□□□ -0.3
PCM1-212ENST00000519253 TRIM41Q8WV44 630 aa13.11□□□□□ -0.31
PCM1-212ENST00000519253 FAM9AQ8IZU1 332 aaPredicted RBP13.1□□□□□ -0.31
PCM1-212ENST00000519253 EHMT2Q96KQ7 1210 aa13.1□□□□□ -0.31
PCM1-212ENST00000519253 LOC105371045A0A1W2PR82 267 aa13.05□□□□□ -0.32
PCM1-212ENST00000519253 CCER1Q8TC90 406 aaPredicted RBP13.03□□□□□ -0.32
PCM1-212ENST00000519253 DCAF1Q9Y4B6 1507 aa12.9□□□□□ -0.34
PCM1-212ENST00000519253 APLP2Q06481 763 aa12.85□□□□□ -0.35
PCM1-212ENST00000519253 ZCCHC6Q5VYS8 1495 aaKnown RBP12.78□□□□□ -0.36
PCM1-212ENST00000519253 TTBK1Q5TCY1 1321 aaPredicted RBP12.77□□□□□ -0.36
PCM1-212ENST00000519253 MYO15BQ96JP2 1530 aa12.72□□□□□ -0.37
PCM1-212ENST00000519253 DIEXFQ68CQ4 756 aaKnown RBP12.71□□□□□ -0.37
PCM1-212ENST00000519253 YTHDC1Q96MU7 727 aaKnown RBP12.7□□□□□ -0.38
PCM1-212ENST00000519253 ACIN1Q9UKV3 1341 aaKnown RBP12.67□□□□□ -0.38
PCM1-212ENST00000519253 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.66□□□□□ -0.38
PCM1-212ENST00000519253 UBTFP17480 764 aaKnown RBP12.65□□□□□ -0.38
PCM1-212ENST00000519253 GTF3C3Q9Y5Q9 886 aa12.63□□□□□ -0.39
PCM1-212ENST00000519253 SCAF1Q9H7N4 1312 aaKnown RBP12.58□□□□□ -0.4
PCM1-212ENST00000519253 CCDC180Q9P1Z9 1646 aa12.52□□□□□ -0.41
PCM1-212ENST00000519253 ZNF316A6NFI3 1004 aaPredicted RBP12.48□□□□□ -0.41
PCM1-212ENST00000519253 NEFLP07196 543 aa12.48□□□□□ -0.41
PCM1-212ENST00000519253 NEUROD1Q13562 356 aa12.45□□□□□ -0.42
PCM1-212ENST00000519253 ERICH6Q7L0X2 663 aa12.43□□□□□ -0.42
PCM1-212ENST00000519253 HNRNPUL2Q1KMD3 747 aaKnown RBP12.42□□□□□ -0.42
PCM1-212ENST00000519253 RANGAP1P46060 587 aaPredicted RBP12.39□□□□□ -0.43
PCM1-212ENST00000519253 CLSPNQ9HAW4 1339 aa12.35□□□□□ -0.43
PCM1-212ENST00000519253 CSRNP3Q8WYN3 585 aa12.24□□□□□ -0.45
PCM1-212ENST00000519253 RSF1Q96T23 1441 aaPredicted RBP12.24□□□□□ -0.45
PCM1-212ENST00000519253 ITGAEP38570 1179 aa12.14□□□□□ -0.47
PCM1-212ENST00000519253 MIER1Q8N108 512 aa12.14□□□□□ -0.47
PCM1-212ENST00000519253 SCRIBQ14160 1630 aa12.12□□□□□ -0.47
PCM1-212ENST00000519253 ATP1B4Q9UN42 357 aaPredicted RBP12.11□□□□□ -0.47
PCM1-212ENST00000519253 RB1CC1Q8TDY2 1594 aa12.08□□□□□ -0.48
PCM1-212ENST00000519253 EEA1Q15075 1411 aa12.07□□□□□ -0.48
PCM1-212ENST00000519253 CEP162Q5TB80 1403 aa12.06□□□□□ -0.48
PCM1-212ENST00000519253 BCANQ96GW7 911 aa12.06□□□□□ -0.48
PCM1-212ENST00000519253 TNIKQ9UKE5 1360 aa12.03□□□□□ -0.48
PCM1-212ENST00000519253 ABCC9O60706 1549 aa12.03□□□□□ -0.48
PCM1-212ENST00000519253 ANP32CO43423 234 aa12.02□□□□□ -0.49
PCM1-212ENST00000519253 CDK11AQ9UQ88 783 aaPredicted RBP11.99□□□□□ -0.49
PCM1-212ENST00000519253 FKBP8Q14318 412 aa11.95□□□□□ -0.5
PCM1-212ENST00000519253 GOLGA3Q08378 1498 aa11.95□□□□□ -0.5
PCM1-212ENST00000519253 ANP32EQ9BTT0 268 aa11.95□□□□□ -0.5
PCM1-212ENST00000519253 CLIP1P30622 1438 aa11.94□□□□□ -0.5
PCM1-212ENST00000519253 FAM50AQ14320 339 aaKnown RBP11.92□□□□□ -0.5
PCM1-212ENST00000519253 RTL5Q5HYW3 569 aaPredicted RBP11.91□□□□□ -0.5
PCM1-212ENST00000519253 MYT1LQ9UL68 1186 aa11.9□□□□□ -0.5
PCM1-212ENST00000519253 SUPT16HQ9Y5B9 1047 aaKnown RBP11.89□□□□□ -0.51
PCM1-212ENST00000519253 WRNQ14191 1432 aaPredicted RBP eCLIP11.88□□□□□ -0.51
PCM1-212ENST00000519253 DDX10Q13206 875 aaKnown RBP11.85□□□□□ -0.51
PCM1-212ENST00000519253 CEP164Q9UPV0 1460 aa11.84□□□□□ -0.51
PCM1-212ENST00000519253 CECR2Q9BXF3 1484 aa11.83□□□□□ -0.52
PCM1-212ENST00000519253 NACADO15069 1562 aa11.8□□□□□ -0.52
PCM1-212ENST00000519253 PABPN1Q86U42 306 aaKnown RBP eCLIP11.8□□□□□ -0.52
PCM1-212ENST00000519253 DAXXQ9UER7 740 aaPredicted RBP11.8□□□□□ -0.52
PCM1-212ENST00000519253 BAZ1AQ9NRL2 1556 aaPredicted RBP11.78□□□□□ -0.52
PCM1-212ENST00000519253 SOGA1O94964 1423 aa11.77□□□□□ -0.52
PCM1-212ENST00000519253 MROH2BQ7Z745 1585 aa11.76□□□□□ -0.53
PCM1-212ENST00000519253 TRIM52Q96A61 297 aa11.76□□□□□ -0.53
PCM1-212ENST00000519253 TONSLQ96HA7 1378 aa11.75□□□□□ -0.53
PCM1-212ENST00000519253 HNRNPUQ00839 825 aaKnown RBP eCLIP11.75□□□□□ -0.53
PCM1-212ENST00000519253 VPS8Q8N3P4 1428 aa11.75□□□□□ -0.53
PCM1-212ENST00000519253 POLR3GLQ9BT43 218 aa11.74□□□□□ -0.53
PCM1-212ENST00000519253 ANP32AP39687 249 aaKnown RBP11.73□□□□□ -0.53
PCM1-212ENST00000519253 TSHZ2Q9NRE2 1034 aa11.72□□□□□ -0.53
PCM1-212ENST00000519253 CCDC88BA6NC98 1476 aa11.72□□□□□ -0.53
PCM1-212ENST00000519253 BCL11AQ9H165 835 aa11.69□□□□□ -0.54
PCM1-212ENST00000519253 TIMELESSQ9UNS1 1208 aa11.68□□□□□ -0.54
PCM1-212ENST00000519253 CCER2I3L3R5 266 aa11.66□□□□□ -0.54
PCM1-212ENST00000519253 CNGB1Q14028 1251 aaPredicted RBP11.65□□□□□ -0.54
PCM1-212ENST00000519253 ABCC8Q09428 1581 aa11.64□□□□□ -0.55
PCM1-212ENST00000519253 RBM19Q9Y4C8 960 aaKnown RBP11.64□□□□□ -0.55
PCM1-212ENST00000519253 CCNB3Q8WWL7 1395 aa11.64□□□□□ -0.55
PCM1-212ENST00000519253 P3H3Q8IVL6 736 aa11.61□□□□□ -0.55
PCM1-212ENST00000519253 TOP2AP11388 1531 aaKnown RBP11.59□□□□□ -0.55
PCM1-212ENST00000519253 DHX57Q6P158 1386 aaKnown RBP11.59□□□□□ -0.55
PCM1-212ENST00000519253 FAM9BQ8IZU0 186 aa11.58□□□□□ -0.56
PCM1-212ENST00000519253 WIZO95785 1651 aa11.58□□□□□ -0.56
PCM1-212ENST00000519253 HIRIP3Q9BW71 556 aaPredicted RBP11.58□□□□□ -0.56
PCM1-212ENST00000519253 ZBTB47Q9UFB7 747 aaPredicted RBP11.58□□□□□ -0.56
PCM1-212ENST00000519253 PPP4R2Q9NY27 417 aa11.57□□□□□ -0.56
PCM1-212ENST00000519253 ERICH6BQ5W0A0 696 aa11.57□□□□□ -0.56
PCM1-212ENST00000519253 MRS2Q9HD23 443 aa11.57□□□□□ -0.56
PCM1-212ENST00000519253 KIF27Q86VH2 1401 aa11.57□□□□□ -0.56
PCM1-212ENST00000519253 CCDC136Q96JN2 1154 aa11.57□□□□□ -0.56
PCM1-212ENST00000519253 IRX6P78412 446 aaPredicted RBP11.56□□□□□ -0.56
PCM1-212ENST00000519253 EIF4G2P78344 907 aaKnown RBP eCLIP11.55□□□□□ -0.56
PCM1-212ENST00000519253 BAZ1BQ9UIG0 1483 aaKnown RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms