RNA–Protein interactions for RNA: ENST00000519132.5

CLK4-202, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 3,129 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-202ENST00000519132 PABPN1Q86U42 306 aaKnown RBP eCLIP12.85□□□□□ -0.35
CLK4-202ENST00000519132 TRIM41Q8WV44 630 aa12.84□□□□□ -0.35
CLK4-202ENST00000519132 LMOD2Q6P5Q4 547 aa12.8□□□□□ -0.36
CLK4-202ENST00000519132 APLP2Q06481 763 aa12.8□□□□□ -0.36
CLK4-202ENST00000519132 STK25O00506 426 aa12.79□□□□□ -0.36
CLK4-202ENST00000519132 KCNV2Q8TDN2 545 aa12.79□□□□□ -0.36
CLK4-202ENST00000519132 STAG3Q9UJ98 1225 aa12.77□□□□□ -0.37
CLK4-202ENST00000519132 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.75□□□□□ -0.37
CLK4-202ENST00000519132 CADPS2Q86UW7 1296 aa12.75□□□□□ -0.37
CLK4-202ENST00000519132 TRIM26Q12899 539 aaPredicted RBP12.71□□□□□ -0.37
CLK4-202ENST00000519132 NEUROD2Q15784 382 aa12.71□□□□□ -0.38
CLK4-202ENST00000519132 ERICH6Q7L0X2 663 aa12.71□□□□□ -0.38
CLK4-202ENST00000519132 SSUH2Q9Y2M2 353 aa12.68□□□□□ -0.38
CLK4-202ENST00000519132 SLC24A3Q9HC58 644 aa12.67□□□□□ -0.38
CLK4-202ENST00000519132 RIOK3O14730 519 aaKnown RBP12.66□□□□□ -0.38
CLK4-202ENST00000519132 BCL11BQ9C0K0 894 aaPredicted RBP12.65□□□□□ -0.38
CLK4-202ENST00000519132 STK24Q9Y6E0 443 aa12.62□□□□□ -0.39
CLK4-202ENST00000519132 HRCP23327 699 aa12.62□□□□□ -0.39
CLK4-202ENST00000519132 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.6□□□□□ -0.39
CLK4-202ENST00000519132 ZFP91Q96JP5 570 aaPredicted RBP12.6□□□□□ -0.39
CLK4-202ENST00000519132 ARID3AQ99856 593 aa12.59□□□□□ -0.39
CLK4-202ENST00000519132 ZC3H15Q8WU90 426 aaKnown RBP12.59□□□□□ -0.39
CLK4-202ENST00000519132 NUBP1P53384 320 aa12.58□□□□□ -0.4
CLK4-202ENST00000519132 DCAF8Q5TAQ9 597 aa12.57□□□□□ -0.4
CLK4-202ENST00000519132 MYT1Q01538 1121 aa12.54□□□□□ -0.4
CLK4-202ENST00000519132 SEMA3EO15041 775 aa12.53□□□□□ -0.4
CLK4-202ENST00000519132 GPBP1L1Q9HC44 474 aaPredicted RBP12.52□□□□□ -0.4
CLK4-202ENST00000519132 SPDYE2BA6NHP3 402 aa12.51□□□□□ -0.41
CLK4-202ENST00000519132 SPDYE6P0CI01 402 aa12.51□□□□□ -0.41
CLK4-202ENST00000519132 SPDYE2Q495Y8 402 aa12.51□□□□□ -0.41
CLK4-202ENST00000519132 ZBTB12Q9Y330 459 aaPredicted RBP12.51□□□□□ -0.41
CLK4-202ENST00000519132 ZCCHC6Q5VYS8 1495 aaKnown RBP12.5□□□□□ -0.41
CLK4-202ENST00000519132 P3H3Q8IVL6 736 aa12.49□□□□□ -0.41
CLK4-202ENST00000519132 RNF39Q9H2S5 420 aa12.48□□□□□ -0.41
CLK4-202ENST00000519132 C1orf115Q9H7X2 142 aa12.48□□□□□ -0.41
CLK4-202ENST00000519132 PYGBP11216 843 aa12.47□□□□□ -0.41
CLK4-202ENST00000519132 ZBTB47Q9UFB7 747 aaPredicted RBP12.46□□□□□ -0.41
CLK4-202ENST00000519132 PLEKHG5O94827 1062 aa12.46□□□□□ -0.41
CLK4-202ENST00000519132 PELP1Q8IZL8 1130 aaKnown RBP12.45□□□□□ -0.42
CLK4-202ENST00000519132 VGFO15240 615 aaPredicted RBP12.44□□□□□ -0.42
CLK4-202ENST00000519132 RANGAP1P46060 587 aaPredicted RBP12.44□□□□□ -0.42
CLK4-202ENST00000519132 GSE1Q14687 1217 aa12.44□□□□□ -0.42
CLK4-202ENST00000519132 ARID3CA6NKF2 412 aa12.43□□□□□ -0.42
CLK4-202ENST00000519132 RASEFQ8IZ41 740 aa12.43□□□□□ -0.42
CLK4-202ENST00000519132 DCAF1Q9Y4B6 1507 aa12.4□□□□□ -0.42
CLK4-202ENST00000519132 IL27Q8NEV9 243 aa12.4□□□□□ -0.42
CLK4-202ENST00000519132 WDR70Q9NW82 654 aa12.4□□□□□ -0.42
CLK4-202ENST00000519132 NPM2Q86SE8 214 aaKnown RBP12.39□□□□□ -0.43
CLK4-202ENST00000519132 DSG3P32926 999 aa12.38□□□□□ -0.43
CLK4-202ENST00000519132 ABCC9O60706 1549 aa12.37□□□□□ -0.43
CLK4-202ENST00000519132 TTBK1Q5TCY1 1321 aaPredicted RBP12.34□□□□□ -0.43
CLK4-202ENST00000519132 MYO15BQ96JP2 1530 aa12.33□□□□□ -0.44
CLK4-202ENST00000519132 PPP1R37O75864 691 aa12.32□□□□□ -0.44
CLK4-202ENST00000519132 MNX1P50219 401 aaPredicted RBP12.31□□□□□ -0.44
CLK4-202ENST00000519132 FAM212AQ96EL1 285 aa12.29□□□□□ -0.44
CLK4-202ENST00000519132 ZMYND10O75800 440 aa12.28□□□□□ -0.44
CLK4-202ENST00000519132 ZMYND15Q9H091 742 aa12.28□□□□□ -0.44
CLK4-202ENST00000519132 TESPA1A2RU30 521 aaPredicted RBP12.27□□□□□ -0.45
CLK4-202ENST00000519132 MKRN3Q13064 507 aaKnown RBP12.24□□□□□ -0.45
CLK4-202ENST00000519132 MFRPQ9BY79 579 aa12.24□□□□□ -0.45
CLK4-202ENST00000519132 NACADO15069 1562 aa12.24□□□□□ -0.45
CLK4-202ENST00000519132 CREBZFQ9NS37 354 aa12.21□□□□□ -0.46
CLK4-202ENST00000519132 RBM26Q5T8P6 1007 aaKnown RBP12.2□□□□□ -0.46
CLK4-202ENST00000519132 E2F4Q16254 413 aa12.2□□□□□ -0.46
CLK4-202ENST00000519132 NECTIN2Q92692 538 aa12.2□□□□□ -0.46
CLK4-202ENST00000519132 RSPH6AQ9H0K4 717 aa12.2□□□□□ -0.46
CLK4-202ENST00000519132 ARHGEF1Q92888 912 aaKnown RBP12.19□□□□□ -0.46
CLK4-202ENST00000519132 KDM4CQ9H3R0 1056 aa12.17□□□□□ -0.46
CLK4-202ENST00000519132 PCDHB8Q9UN66 801 aa12.17□□□□□ -0.46
CLK4-202ENST00000519132 PCDHB13Q9Y5F0 798 aa12.17□□□□□ -0.46
CLK4-202ENST00000519132 APBB1O00213 710 aa12.16□□□□□ -0.46
CLK4-202ENST00000519132 SGIP1Q9BQI5 828 aa12.15□□□□□ -0.46
CLK4-202ENST00000519132 RYDENQ9NUL5 291 aaKnown RBP12.15□□□□□ -0.46
CLK4-202ENST00000519132 C1QBPQ07021 282 aaKnown RBP12.15□□□□□ -0.46
CLK4-202ENST00000519132 RB1CC1Q8TDY2 1594 aa12.14□□□□□ -0.47
CLK4-202ENST00000519132 CLEC11AQ9Y240 323 aa12.14□□□□□ -0.47
CLK4-202ENST00000519132 MLLT3P42568 568 aaPredicted RBP12.14□□□□□ -0.47
CLK4-202ENST00000519132 CHRM1P11229 460 aaPredicted RBP12.13□□□□□ -0.47
CLK4-202ENST00000519132 NCKAP5LQ9HCH0 1330 aa12.12□□□□□ -0.47
CLK4-202ENST00000519132 FAM117AQ9C073 453 aa12.11□□□□□ -0.47
CLK4-202ENST00000519132 BARGINQ6ZT62 677 aa12.11□□□□□ -0.47
CLK4-202ENST00000519132 TSPYL2Q9H2G4 693 aaPredicted RBP12.04□□□□□ -0.48
CLK4-202ENST00000519132 LARP6Q9BRS8 491 aaKnown RBP12.04□□□□□ -0.48
CLK4-202ENST00000519132 KRI1Q8N9T8 703 aaKnown RBP12.03□□□□□ -0.48
CLK4-202ENST00000519132 CLUAP1Q96AJ1 413 aa12.02□□□□□ -0.48
CLK4-202ENST00000519132 PDE4DQ08499 809 aa12.02□□□□□ -0.49
CLK4-202ENST00000519132 PHF8Q9UPP1 1060 aa12.02□□□□□ -0.49
CLK4-202ENST00000519132 AK7Q96M32 723 aa12.01□□□□□ -0.49
CLK4-202ENST00000519132 TRIM66O15016 1216 aa12□□□□□ -0.49
CLK4-202ENST00000519132 CCDC82Q8N4S0 544 aa12□□□□□ -0.49
CLK4-202ENST00000519132 PLEKHG3A1L390 1219 aa11.98□□□□□ -0.49
CLK4-202ENST00000519132 EFCAB3Q8N7B9 438 aa11.98□□□□□ -0.49
CLK4-202ENST00000519132 FBXO22Q8NEZ5 403 aa11.98□□□□□ -0.49
CLK4-202ENST00000519132 PRR29P0C7W0 189 aa11.97□□□□□ -0.49
CLK4-202ENST00000519132 GPIHBP1Q8IV16 184 aa11.97□□□□□ -0.49
CLK4-202ENST00000519132 ZNF316A6NFI3 1004 aaPredicted RBP11.95□□□□□ -0.5
CLK4-202ENST00000519132 SCRIBQ14160 1630 aa11.94□□□□□ -0.5
CLK4-202ENST00000519132 UNC13AQ9UPW8 1703 aa11.93□□□□□ -0.5
CLK4-202ENST00000519132 PDAP1Q13442 181 aaKnown RBP11.92□□□□□ -0.5
CLK4-202ENST00000519132 PSEN1P49768 467 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms