RNA–Protein interactions for RNA: ENST00000511955.5

TRAPPC11-208, Transcript of trafficking protein particle complex 11, humanhuman

TSL 2

Gene TRAPPC11, Length 2,342 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC11-208ENST00000511955 CADPSQ9ULU8 1353 aa7.75□□□□□ -1.17
TRAPPC11-208ENST00000511955 NBR1Q14596 966 aa7.74□□□□□ -1.17
TRAPPC11-208ENST00000511955 UBE2Q2Q8WVN8 375 aa7.72□□□□□ -1.17
TRAPPC11-208ENST00000511955 LAMC3Q9Y6N6 1575 aa7.72□□□□□ -1.17
TRAPPC11-208ENST00000511955 SAMD1Q6SPF0 538 aaPredicted RBP7.71□□□□□ -1.18
TRAPPC11-208ENST00000511955 HOXD11P31277 338 aaPredicted RBP7.7□□□□□ -1.18
TRAPPC11-208ENST00000511955 CFTRP13569 1480 aa7.7□□□□□ -1.18
TRAPPC11-208ENST00000511955 IGSF3O75054 1194 aa7.7□□□□□ -1.18
TRAPPC11-208ENST00000511955 PDS5BQ9NTI5 1447 aa7.7□□□□□ -1.18
TRAPPC11-208ENST00000511955 KIF21AQ7Z4S6 1674 aa7.69□□□□□ -1.18
TRAPPC11-208ENST00000511955 FANCD2Q9BXW9 1451 aa7.68□□□□□ -1.18
TRAPPC11-208ENST00000511955 CFAP44Q96MT7 982 aa7.68□□□□□ -1.18
TRAPPC11-208ENST00000511955 PAXIP1Q6ZW49 1069 aaPredicted RBP7.68□□□□□ -1.18
TRAPPC11-208ENST00000511955 DHX37Q8IY37 1157 aaKnown RBP7.67□□□□□ -1.18
TRAPPC11-208ENST00000511955 CCDC9Q9Y3X0 531 aaKnown RBP7.67□□□□□ -1.18
TRAPPC11-208ENST00000511955 CEP164Q9UPV0 1460 aa7.66□□□□□ -1.18
TRAPPC11-208ENST00000511955 FOXD4L1Q9NU39 408 aa7.64□□□□□ -1.19
TRAPPC11-208ENST00000511955 HSP90B1P14625 803 aaKnown RBP7.63□□□□□ -1.19
TRAPPC11-208ENST00000511955 PDE4CQ08493 712 aa7.63□□□□□ -1.19
TRAPPC11-208ENST00000511955 HMGB1P09429 215 aaKnown RBP7.62□□□□□ -1.19
TRAPPC11-208ENST00000511955 BRD2P25440 801 aaKnown RBP7.62□□□□□ -1.19
TRAPPC11-208ENST00000511955 ARID3AQ99856 593 aa7.62□□□□□ -1.19
TRAPPC11-208ENST00000511955 MRC2Q9UBG0 1479 aa7.61□□□□□ -1.19
TRAPPC11-208ENST00000511955 TSHZ2Q9NRE2 1034 aa7.61□□□□□ -1.19
TRAPPC11-208ENST00000511955 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.61□□□□□ -1.19
TRAPPC11-208ENST00000511955 THOC2Q8NI27 1593 aaKnown RBP7.61□□□□□ -1.19
TRAPPC11-208ENST00000511955 FAM9AQ8IZU1 332 aaPredicted RBP7.6□□□□□ -1.19
TRAPPC11-208ENST00000511955 URB2Q14146 1524 aaKnown RBP7.6□□□□□ -1.19
TRAPPC11-208ENST00000511955 PRDM2Q13029 1718 aa7.58□□□□□ -1.2
TRAPPC11-208ENST00000511955 ABCC8Q09428 1581 aa7.58□□□□□ -1.2
TRAPPC11-208ENST00000511955 WDR62O43379 1518 aa7.56□□□□□ -1.2
TRAPPC11-208ENST00000511955 TAF7LQ5H9L4 462 aa7.56□□□□□ -1.2
TRAPPC11-208ENST00000511955 ZBTB7CA1YPR0 619 aa7.55□□□□□ -1.2
TRAPPC11-208ENST00000511955 CUX2O14529 1486 aa7.55□□□□□ -1.2
TRAPPC11-208ENST00000511955 TOPBP1Q92547 1522 aa7.55□□□□□ -1.2
TRAPPC11-208ENST00000511955 CUX1P39880 1505 aa7.53□□□□□ -1.2
TRAPPC11-208ENST00000511955 NEFLP07196 543 aa7.53□□□□□ -1.2
TRAPPC11-208ENST00000511955 POLR3GLQ9BT43 218 aa7.53□□□□□ -1.2
TRAPPC11-208ENST00000511955 WRNQ14191 1432 aaPredicted RBP eCLIP7.53□□□□□ -1.2
TRAPPC11-208ENST00000511955 DNMBPQ6XZF7 1577 aa7.52□□□□□ -1.2
TRAPPC11-208ENST00000511955 BBXQ8WY36 941 aaPredicted RBP7.52□□□□□ -1.21
TRAPPC11-208ENST00000511955 RAD54L2Q9Y4B4 1467 aa7.52□□□□□ -1.21
TRAPPC11-208ENST00000511955 FGD5Q6ZNL6 1462 aa7.51□□□□□ -1.21
TRAPPC11-208ENST00000511955 POLA1P09884 1462 aaPredicted RBP7.51□□□□□ -1.21
TRAPPC11-208ENST00000511955 SLC4A2P04920 1241 aa7.51□□□□□ -1.21
TRAPPC11-208ENST00000511955 TRHP20396 242 aaPredicted RBP7.51□□□□□ -1.21
TRAPPC11-208ENST00000511955 SYNJ1O43426 1573 aa7.5□□□□□ -1.21
TRAPPC11-208ENST00000511955 PUS7Q96PZ0 661 aaKnown RBP7.5□□□□□ -1.21
TRAPPC11-208ENST00000511955 ZNF608Q9ULD9 1512 aaPredicted RBP7.5□□□□□ -1.21
TRAPPC11-208ENST00000511955 SOGA1O94964 1423 aa7.49□□□□□ -1.21
TRAPPC11-208ENST00000511955 NECTIN2Q92692 538 aa7.49□□□□□ -1.21
TRAPPC11-208ENST00000511955 TDRD9Q8NDG6 1382 aaKnown RBP7.49□□□□□ -1.21
TRAPPC11-208ENST00000511955 NPM1P06748 294 aaKnown RBP eCLIP7.49□□□□□ -1.21
TRAPPC11-208ENST00000511955 AQRO60306 1485 aaKnown RBP eCLIP7.48□□□□□ -1.211e-6■■□□□ 11.4
TRAPPC11-208ENST00000511955 TRIM41Q8WV44 630 aa7.47□□□□□ -1.21
TRAPPC11-208ENST00000511955 POTEHQ6S545 545 aa7.47□□□□□ -1.21
TRAPPC11-208ENST00000511955 IFT140Q96RY7 1462 aa7.47□□□□□ -1.21
TRAPPC11-208ENST00000511955 PKD2Q13563 968 aa7.46□□□□□ -1.22
TRAPPC11-208ENST00000511955 TOP2BQ02880 1626 aa7.46□□□□□ -1.22
TRAPPC11-208ENST00000511955 TARBP1Q13395 1621 aaKnown RBP7.44□□□□□ -1.22
TRAPPC11-208ENST00000511955 EIF4G3O43432 1585 aaKnown RBP7.43□□□□□ -1.22
TRAPPC11-208ENST00000511955 BIVM-ERCC5R4GMW8 1640 aa7.43□□□□□ -1.22
TRAPPC11-208ENST00000511955 BRPF1P55201 1214 aaPredicted RBP7.43□□□□□ -1.22
TRAPPC11-208ENST00000511955 MYCNP04198 464 aaPredicted RBP7.42□□□□□ -1.22
TRAPPC11-208ENST00000511955 BCL11BQ9C0K0 894 aaPredicted RBP7.42□□□□□ -1.22
TRAPPC11-208ENST00000511955 SPRYD3Q8NCJ5 442 aa7.41□□□□□ -1.22
TRAPPC11-208ENST00000511955 DCAF8L1A6NGE4 600 aa7.41□□□□□ -1.22
TRAPPC11-208ENST00000511955 PKNOX2Q96KN3 472 aa7.41□□□□□ -1.22
TRAPPC11-208ENST00000511955 C1orf115Q9H7X2 142 aa7.4□□□□□ -1.23
TRAPPC11-208ENST00000511955 GAPVD1Q14C86 1478 aa7.39□□□□□ -1.23
TRAPPC11-208ENST00000511955 ABCA10Q8WWZ4 1543 aa7.39□□□□□ -1.23
TRAPPC11-208ENST00000511955 RSPH6AQ9H0K4 717 aa7.39□□□□□ -1.23
TRAPPC11-208ENST00000511955 CHMP7Q8WUX9 453 aaPredicted RBP7.38□□□□□ -1.23
TRAPPC11-208ENST00000511955 SNAPC4Q5SXM2 1469 aa7.38□□□□□ -1.23
TRAPPC11-208ENST00000511955 ZNF428Q96B54 188 aa7.38□□□□□ -1.23
TRAPPC11-208ENST00000511955 ZMYND15Q9H091 742 aa7.38□□□□□ -1.23
TRAPPC11-208ENST00000511955 RUSC2Q8N2Y8 1516 aa7.37□□□□□ -1.23
TRAPPC11-208ENST00000511955 WDR97A6NE52 1622 aa7.37□□□□□ -1.23
TRAPPC11-208ENST00000511955 RAD21O60216 631 aa7.37□□□□□ -1.23
TRAPPC11-208ENST00000511955 GRIN2BQ13224 1484 aa7.37□□□□□ -1.23
TRAPPC11-208ENST00000511955 ATXN8OSP0DMR3 200 aa7.36□□□□□ -1.23
TRAPPC11-208ENST00000511955 KCTD17Q8N5Z5 321 aa7.36□□□□□ -1.23
TRAPPC11-208ENST00000511955 DNAJC5Q9H3Z4 198 aa7.36□□□□□ -1.23
TRAPPC11-208ENST00000511955 KIF27Q86VH2 1401 aa7.36□□□□□ -1.23
TRAPPC11-208ENST00000511955 ABCA5Q8WWZ7 1642 aa7.35□□□□□ -1.23
TRAPPC11-208ENST00000511955 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.34□□□□□ -1.23
TRAPPC11-208ENST00000511955 OSCARQ8IYS5 282 aa7.34□□□□□ -1.23
TRAPPC11-208ENST00000511955 BCCIPQ9P287 314 aaKnown RBP eCLIP7.34□□□□□ -1.23
TRAPPC11-208ENST00000511955 PBRM1Q86U86 1689 aa7.34□□□□□ -1.23
TRAPPC11-208ENST00000511955 ARID3CA6NKF2 412 aa7.34□□□□□ -1.23
TRAPPC11-208ENST00000511955 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.34□□□□□ -1.23
TRAPPC11-208ENST00000511955 RBM25P49756 843 aaKnown RBP7.33□□□□□ -1.24
TRAPPC11-208ENST00000511955 IGF1RP08069 1367 aa7.32□□□□□ -1.24
TRAPPC11-208ENST00000511955 CHD1O14646 1710 aa7.32□□□□□ -1.24
TRAPPC11-208ENST00000511955 FGD1P98174 961 aa7.32□□□□□ -1.24
TRAPPC11-208ENST00000511955 NEUROD2Q15784 382 aa7.32□□□□□ -1.24
TRAPPC11-208ENST00000511955 MAGI1Q96QZ7 1491 aaPredicted RBP7.31□□□□□ -1.24
TRAPPC11-208ENST00000511955 MTMR7Q9Y216 660 aa7.31□□□□□ -1.24
TRAPPC11-208ENST00000511955 SYNJ2O15056 1496 aa7.3□□□□□ -1.24
TRAPPC11-208ENST00000511955 IRX6P78412 446 aaPredicted RBP7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms