RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 FGD5Q6ZNL6 1462 aa14.18□□□□□ -0.14
SCN1A-207ENST00000507401 WDR97A6NE52 1622 aa14.17□□□□□ -0.14
SCN1A-207ENST00000507401 TDRD9Q8NDG6 1382 aaKnown RBP14.16□□□□□ -0.14
SCN1A-207ENST00000507401 TRHP20396 242 aaPredicted RBP14.13□□□□□ -0.15
SCN1A-207ENST00000507401 ZNF219Q9P2Y4 722 aaPredicted RBP14.13□□□□□ -0.15
SCN1A-207ENST00000507401 TRIM41Q8WV44 630 aa14.12□□□□□ -0.15
SCN1A-207ENST00000507401 FBLN2P98095 1184 aa14.09□□□□□ -0.15
SCN1A-207ENST00000507401 GRIN2BQ13224 1484 aa14.08□□□□□ -0.16
SCN1A-207ENST00000507401 CHD1O14646 1710 aa14.07□□□□□ -0.16
SCN1A-207ENST00000507401 MAGI1Q96QZ7 1491 aaPredicted RBP14.06□□□□□ -0.16
SCN1A-207ENST00000507401 ABCA10Q8WWZ4 1543 aa14.06□□□□□ -0.16
SCN1A-207ENST00000507401 CHMP7Q8WUX9 453 aaPredicted RBP14.06□□□□□ -0.16
SCN1A-207ENST00000507401 WRNQ14191 1432 aaPredicted RBP eCLIP14.06□□□□□ -0.16
SCN1A-207ENST00000507401 GAPVD1Q14C86 1478 aa14.05□□□□□ -0.16
SCN1A-207ENST00000507401 ATF5Q9Y2D1 282 aaPredicted RBP14.04□□□□□ -0.16
SCN1A-207ENST00000507401 SNAPC4Q5SXM2 1469 aa14.04□□□□□ -0.16
SCN1A-207ENST00000507401 RIMBP3CA6NJZ7 1639 aa14.04□□□□□ -0.16
SCN1A-207ENST00000507401 RIMBP3BA6NNM3 1639 aa14.04□□□□□ -0.16
SCN1A-207ENST00000507401 TOP2BQ02880 1626 aa14.04□□□□□ -0.16
SCN1A-207ENST00000507401 RIMBP3Q9UFD9 1639 aa14.04□□□□□ -0.16
SCN1A-207ENST00000507401 ARHGEF11O15085 1522 aa14.03□□□□□ -0.16
SCN1A-207ENST00000507401 BIVM-ERCC5R4GMW8 1640 aa14.02□□□□□ -0.16
SCN1A-207ENST00000507401 ABCB7O75027 752 aa14.02□□□□□ -0.17
SCN1A-207ENST00000507401 SYNJ2O15056 1496 aa14.01□□□□□ -0.17
SCN1A-207ENST00000507401 ABCA5Q8WWZ7 1642 aa13.99□□□□□ -0.17
SCN1A-207ENST00000507401 SYNJ1O43426 1573 aa13.99□□□□□ -0.17
SCN1A-207ENST00000507401 PBRM1Q86U86 1689 aa13.98□□□□□ -0.17
SCN1A-207ENST00000507401 CYB5RLQ6IPT4 315 aa13.96□□□□□ -0.17
SCN1A-207ENST00000507401 CLASP1Q7Z460 1538 aa13.94□□□□□ -0.18
SCN1A-207ENST00000507401 ERICH3Q5RHP9 1530 aa13.9□□□□□ -0.19
SCN1A-207ENST00000507401 FHAD1B1AJZ9 1412 aa13.89□□□□□ -0.19
SCN1A-207ENST00000507401 GRIN2AQ12879 1464 aa13.88□□□□□ -0.19
SCN1A-207ENST00000507401 ARAP1Q96P48 1450 aa13.88□□□□□ -0.19
SCN1A-207ENST00000507401 POLA2Q14181 598 aa13.87□□□□□ -0.19
SCN1A-207ENST00000507401 ATXN8OSP0DMR3 200 aa13.86□□□□□ -0.19
SCN1A-207ENST00000507401 ADAMTS12P58397 1594 aa13.85□□□□□ -0.19
SCN1A-207ENST00000507401 CSRNP3Q8WYN3 585 aa13.85□□□□□ -0.19
SCN1A-207ENST00000507401 NUP160Q12769 1436 aa13.84□□□□□ -0.19
SCN1A-207ENST00000507401 POTEHQ6S545 545 aa13.81□□□□□ -0.2
SCN1A-207ENST00000507401 KIF27Q86VH2 1401 aa13.8□□□□□ -0.2
SCN1A-207ENST00000507401 IGF1RP08069 1367 aa13.79□□□□□ -0.2
SCN1A-207ENST00000507401 CEP170Q5SW79 1584 aa13.79□□□□□ -0.2
SCN1A-207ENST00000507401 JPH4Q96JJ6 628 aa13.75□□□□□ -0.21
SCN1A-207ENST00000507401 SHROOM2Q13796 1616 aa13.75□□□□□ -0.21
SCN1A-207ENST00000507401 EHMT2Q96KQ7 1210 aa13.71□□□□□ -0.21
SCN1A-207ENST00000507401 CUL7Q14999 1698 aa13.71□□□□□ -0.21
SCN1A-207ENST00000507401 ERCC6L2Q5T890 1561 aa13.7□□□□□ -0.22
SCN1A-207ENST00000507401 PRG4Q92954 1404 aaPredicted RBP13.69□□□□□ -0.22
SCN1A-207ENST00000507401 CARMIL1Q5VZK9 1371 aa13.69□□□□□ -0.22
SCN1A-207ENST00000507401 KIAA0586Q9BVV6 1533 aa13.68□□□□□ -0.22
SCN1A-207ENST00000507401 RUSC2Q8N2Y8 1516 aa13.65□□□□□ -0.22
SCN1A-207ENST00000507401 RAPGEF2Q9Y4G8 1499 aa13.57□□□□□ -0.24
SCN1A-207ENST00000507401 NPM1P06748 294 aaKnown RBP eCLIP13.57□□□□□ -0.24
SCN1A-207ENST00000507401 ZBTB12Q9Y330 459 aaPredicted RBP13.55□□□□□ -0.24
SCN1A-207ENST00000507401 CARMIL2Q6F5E8 1435 aa13.55□□□□□ -0.24
SCN1A-207ENST00000507401 PTPRGP23470 1445 aa13.53□□□□□ -0.24
SCN1A-207ENST00000507401 IQGAP2Q13576 1575 aa13.53□□□□□ -0.24
SCN1A-207ENST00000507401 TNIKQ9UKE5 1360 aa13.51□□□□□ -0.25
SCN1A-207ENST00000507401 RBM42Q9BTD8 480 aaKnown RBP13.49□□□□□ -0.25
SCN1A-207ENST00000507401 MAPKBP1O60336 1514 aa13.48□□□□□ -0.25
SCN1A-207ENST00000507401 ADCY10Q96PN6 1610 aa13.47□□□□□ -0.25
SCN1A-207ENST00000507401 UGGT2Q9NYU1 1516 aa13.47□□□□□ -0.25
SCN1A-207ENST00000507401 PRXQ9BXM0 1461 aa13.47□□□□□ -0.25
SCN1A-207ENST00000507401 DISP1Q96F81 1524 aa13.46□□□□□ -0.25
SCN1A-207ENST00000507401 ABCC10Q5T3U5 1492 aa13.45□□□□□ -0.26
SCN1A-207ENST00000507401 FAM69CQ0P6D2 419 aa13.44□□□□□ -0.26
SCN1A-207ENST00000507401 KIF13AQ9H1H9 1805 aa13.43□□□□□ -0.26
SCN1A-207ENST00000507401 UHRF1BP1LA0JNW5 1464 aa13.42□□□□□ -0.26
SCN1A-207ENST00000507401 UACAQ9BZF9 1416 aa13.42□□□□□ -0.26
SCN1A-207ENST00000507401 MKRN4PQ13434 485 aaPredicted RBP13.42□□□□□ -0.26
SCN1A-207ENST00000507401 TTBK1Q5TCY1 1321 aaPredicted RBP13.41□□□□□ -0.26
SCN1A-207ENST00000507401 EEA1Q15075 1411 aa13.4□□□□□ -0.26
SCN1A-207ENST00000507401 ABCC2Q92887 1545 aa13.4□□□□□ -0.26
SCN1A-207ENST00000507401 GOLGA3Q08378 1498 aa13.4□□□□□ -0.26
SCN1A-207ENST00000507401 CTTNBP2Q8WZ74 1663 aa13.4□□□□□ -0.26
SCN1A-207ENST00000507401 KIAA0556O60303 1618 aa13.39□□□□□ -0.27
SCN1A-207ENST00000507401 DIP2BQ9P265 1576 aa13.37□□□□□ -0.27
SCN1A-207ENST00000507401 FAM9AQ8IZU1 332 aaPredicted RBP13.37□□□□□ -0.27
SCN1A-207ENST00000507401 PLB1Q6P1J6 1458 aa13.36□□□□□ -0.27
SCN1A-207ENST00000507401 KDM5BQ9UGL1 1544 aa13.35□□□□□ -0.27
SCN1A-207ENST00000507401 ASXL2Q76L83 1435 aa13.34□□□□□ -0.27
SCN1A-207ENST00000507401 GLI2P10070 1586 aa13.31□□□□□ -0.28
SCN1A-207ENST00000507401 AKT1S1Q96B36 256 aa13.28□□□□□ -0.28
SCN1A-207ENST00000507401 ZCCHC11Q5TAX3 1644 aaKnown RBP13.28□□□□□ -0.28
SCN1A-207ENST00000507401 ABCA8O94911 1581 aa13.27□□□□□ -0.29
SCN1A-207ENST00000507401 EPRSP07814 1512 aaKnown RBP13.26□□□□□ -0.29
SCN1A-207ENST00000507401 TSPOAP1O95153 1857 aa13.25□□□□□ -0.29
SCN1A-207ENST00000507401 P3H3Q8IVL6 736 aa13.25□□□□□ -0.29
SCN1A-207ENST00000507401 SAMD9Q5K651 1589 aa13.24□□□□□ -0.29
SCN1A-207ENST00000507401 KIF21BO75037 1637 aa13.23□□□□□ -0.29
SCN1A-207ENST00000507401 WDR7Q9Y4E6 1490 aa13.23□□□□□ -0.29
SCN1A-207ENST00000507401 KDM6BO15054 1643 aa13.21□□□□□ -0.29
SCN1A-207ENST00000507401 MAP3K4Q9Y6R4 1608 aa13.21□□□□□ -0.3
SCN1A-207ENST00000507401 SPDYE2BA6NHP3 402 aa13.2□□□□□ -0.3
SCN1A-207ENST00000507401 SPDYE6P0CI01 402 aa13.2□□□□□ -0.3
SCN1A-207ENST00000507401 SPDYE2Q495Y8 402 aa13.2□□□□□ -0.3
SCN1A-207ENST00000507401 PPRC1Q5VV67 1664 aaKnown RBP13.19□□□□□ -0.3
SCN1A-207ENST00000507401 ATP10BO94823 1461 aa13.19□□□□□ -0.3
SCN1A-207ENST00000507401 TEX14Q8IWB6 1497 aa13.19□□□□□ -0.3
SCN1A-207ENST00000507401 REM2Q8IYK8 340 aaPredicted RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms