RNA–Protein interactions for RNA: ENST00000498689.5

CSTF1-207, Transcript of cleavage stimulation factor subunit 1, humanhuman

TSL 1 (best)

Gene CSTF1, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF1-207ENST00000498689 ABCC10Q5T3U5 1492 aa10.13□□□□□ -0.79
CSTF1-207ENST00000498689 HOXD11P31277 338 aaPredicted RBP10.1□□□□□ -0.79
CSTF1-207ENST00000498689 CNKSR2Q8WXI2 1034 aa10.08□□□□□ -0.8
CSTF1-207ENST00000498689 PPRC1Q5VV67 1664 aaKnown RBP10.08□□□□□ -0.8
CSTF1-207ENST00000498689 CHMP7Q8WUX9 453 aaPredicted RBP10.05□□□□□ -0.8
CSTF1-207ENST00000498689 CEP170Q5SW79 1584 aa10.04□□□□□ -0.8
CSTF1-207ENST00000498689 DNMBPQ6XZF7 1577 aa10.03□□□□□ -0.8
CSTF1-207ENST00000498689 TDRD9Q8NDG6 1382 aaKnown RBP10.01□□□□□ -0.81
CSTF1-207ENST00000498689 RAD54L2Q9Y4B4 1467 aa10.01□□□□□ -0.81
CSTF1-207ENST00000498689 PBRM1Q86U86 1689 aa10.01□□□□□ -0.81
CSTF1-207ENST00000498689 MAPKBP1O60336 1514 aa10.01□□□□□ -0.81
CSTF1-207ENST00000498689 CERKQ8TCT0 537 aa10□□□□□ -0.81
CSTF1-207ENST00000498689 RNF216Q9NWF9 866 aaPredicted RBP10□□□□□ -0.81
CSTF1-207ENST00000498689 TOP2BQ02880 1626 aa10□□□□□ -0.81
CSTF1-207ENST00000498689 POLA1P09884 1462 aaPredicted RBP9.98□□□□□ -0.81
CSTF1-207ENST00000498689 MAGI1Q96QZ7 1491 aaPredicted RBP9.98□□□□□ -0.81
CSTF1-207ENST00000498689 SHROOM2Q13796 1616 aa9.98□□□□□ -0.81
CSTF1-207ENST00000498689 RNF39Q9H2S5 420 aa9.98□□□□□ -0.81
CSTF1-207ENST00000498689 COL17A1Q9UMD9 1497 aaPredicted RBP9.97□□□□□ -0.81
CSTF1-207ENST00000498689 ADCY10Q96PN6 1610 aa9.95□□□□□ -0.82
CSTF1-207ENST00000498689 ABCC8Q09428 1581 aa9.92□□□□□ -0.82
CSTF1-207ENST00000498689 KIF21BO75037 1637 aa9.92□□□□□ -0.82
CSTF1-207ENST00000498689 PCF11O94913 1555 aaKnown RBP9.92□□□□□ -0.82
CSTF1-207ENST00000498689 WDR97A6NE52 1622 aa9.9□□□□□ -0.82
CSTF1-207ENST00000498689 GRIN2BQ13224 1484 aa9.88□□□□□ -0.83
CSTF1-207ENST00000498689 SOGA1O94964 1423 aa9.86□□□□□ -0.83
CSTF1-207ENST00000498689 PTPRMP28827 1452 aa9.84□□□□□ -0.83
CSTF1-207ENST00000498689 ADAMTSL3P82987 1691 aa9.83□□□□□ -0.84
CSTF1-207ENST00000498689 HSPA2P54652 639 aa9.82□□□□□ -0.84
CSTF1-207ENST00000498689 C1QBPQ07021 282 aaKnown RBP9.82□□□□□ -0.84
CSTF1-207ENST00000498689 NCBP3Q53F19 620 aaKnown RBP9.82□□□□□ -0.84
CSTF1-207ENST00000498689 NPM1P06748 294 aaKnown RBP eCLIP9.81□□□□□ -0.84
CSTF1-207ENST00000498689 GRIN2AQ12879 1464 aa9.8□□□□□ -0.84
CSTF1-207ENST00000498689 SRCAPQ6ZRS2 3230 aa9.8□□□□□ -0.84
CSTF1-207ENST00000498689 NUP160Q12769 1436 aa9.79□□□□□ -0.84
CSTF1-207ENST00000498689 MAP3K4Q9Y6R4 1608 aa9.78□□□□□ -0.84
CSTF1-207ENST00000498689 PRG4Q92954 1404 aaPredicted RBP9.78□□□□□ -0.84
CSTF1-207ENST00000498689 FGD5Q6ZNL6 1462 aa9.78□□□□□ -0.84
CSTF1-207ENST00000498689 TOP2AP11388 1531 aaKnown RBP9.77□□□□□ -0.84
CSTF1-207ENST00000498689 MED1Q15648 1581 aaPredicted RBP9.77□□□□□ -0.85
CSTF1-207ENST00000498689 GLI2P10070 1586 aa9.76□□□□□ -0.85
CSTF1-207ENST00000498689 MADDQ8WXG6 1647 aa9.76□□□□□ -0.85
CSTF1-207ENST00000498689 CUL7Q14999 1698 aa9.75□□□□□ -0.85
CSTF1-207ENST00000498689 STRCQ7RTU9 1775 aa9.75□□□□□ -0.85
CSTF1-207ENST00000498689 ABCA5Q8WWZ7 1642 aa9.74□□□□□ -0.85
CSTF1-207ENST00000498689 RIMS1Q86UR5 1692 aaKnown RBP9.74□□□□□ -0.85
CSTF1-207ENST00000498689 ADAMTS12P58397 1594 aa9.73□□□□□ -0.85
CSTF1-207ENST00000498689 BCORL1Q5H9F3 1711 aa9.71□□□□□ -0.85
CSTF1-207ENST00000498689 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.71□□□□□ -0.86
CSTF1-207ENST00000498689 CCDC88BA6NC98 1476 aa9.69□□□□□ -0.86
CSTF1-207ENST00000498689 NPM3O75607 178 aaKnown RBP9.68□□□□□ -0.86
CSTF1-207ENST00000498689 ASXL2Q76L83 1435 aa9.66□□□□□ -0.86
CSTF1-207ENST00000498689 CUX1P39880 1505 aa9.65□□□□□ -0.86
CSTF1-207ENST00000498689 JPH4Q96JJ6 628 aa9.64□□□□□ -0.87
CSTF1-207ENST00000498689 TEX14Q8IWB6 1497 aa9.64□□□□□ -0.87
CSTF1-207ENST00000498689 RUSC2Q8N2Y8 1516 aa9.63□□□□□ -0.87
CSTF1-207ENST00000498689 ABCC2Q92887 1545 aa9.63□□□□□ -0.87
CSTF1-207ENST00000498689 LTBP4Q8N2S1 1624 aa9.63□□□□□ -0.87
CSTF1-207ENST00000498689 EPRSP07814 1512 aaKnown RBP9.61□□□□□ -0.87
CSTF1-207ENST00000498689 PLB1Q6P1J6 1458 aa9.59□□□□□ -0.87
CSTF1-207ENST00000498689 SETD1AO15047 1707 aaKnown RBP9.59□□□□□ -0.87
CSTF1-207ENST00000498689 KIAA0586Q9BVV6 1533 aa9.58□□□□□ -0.88
CSTF1-207ENST00000498689 PREX1Q8TCU6 1659 aa9.57□□□□□ -0.88
CSTF1-207ENST00000498689 ABCA10Q8WWZ4 1543 aa9.56□□□□□ -0.88
CSTF1-207ENST00000498689 CFAP43Q8NDM7 1665 aa9.55□□□□□ -0.88
CSTF1-207ENST00000498689 IQSEC2Q5JU85 1478 aa9.54□□□□□ -0.88
CSTF1-207ENST00000498689 SIGLEC1Q9BZZ2 1709 aa9.53□□□□□ -0.88
CSTF1-207ENST00000498689 ZCCHC11Q5TAX3 1644 aaKnown RBP9.53□□□□□ -0.88
CSTF1-207ENST00000498689 FHAD1B1AJZ9 1412 aa9.52□□□□□ -0.89
CSTF1-207ENST00000498689 FER1L4A9Z1Z3 1794 aa9.52□□□□□ -0.89
CSTF1-207ENST00000498689 TTBK1Q5TCY1 1321 aaPredicted RBP9.52□□□□□ -0.89
CSTF1-207ENST00000498689 YEATS2Q9ULM3 1422 aa9.51□□□□□ -0.89
CSTF1-207ENST00000498689 HSPA1LP34931 641 aa9.5□□□□□ -0.89
CSTF1-207ENST00000498689 UBAP1LF5GYI3 381 aa9.49□□□□□ -0.89
CSTF1-207ENST00000498689 RGS17Q9UGC6 210 aaPredicted RBP9.47□□□□□ -0.89
CSTF1-207ENST00000498689 U3KPZ7 1027 aaPredicted RBP9.46□□□□□ -0.9
CSTF1-207ENST00000498689 MAGI3Q5TCQ9 1506 aa9.46□□□□□ -0.9
CSTF1-207ENST00000498689 ARID4BQ4LE39 1312 aaPredicted RBP9.45□□□□□ -0.9
CSTF1-207ENST00000498689 PTPRGP23470 1445 aa9.44□□□□□ -0.9
CSTF1-207ENST00000498689 FRMPD1Q5SYB0 1578 aa9.43□□□□□ -0.9
CSTF1-207ENST00000498689 TTC37Q6PGP7 1564 aa9.43□□□□□ -0.9
CSTF1-207ENST00000498689 ARAP3Q8WWN8 1544 aa9.43□□□□□ -0.9
CSTF1-207ENST00000498689 PTPRTO14522 1441 aa9.43□□□□□ -0.9
CSTF1-207ENST00000498689 CAPN15O75808 1086 aa9.42□□□□□ -0.9
CSTF1-207ENST00000498689 SETD1BQ9UPS6 1966 aaKnown RBP9.42□□□□□ -0.9
CSTF1-207ENST00000498689 ERICH3Q5RHP9 1530 aa9.41□□□□□ -0.9
CSTF1-207ENST00000498689 CD109Q6YHK3 1445 aa9.41□□□□□ -0.9
CSTF1-207ENST00000498689 KDM5BQ9UGL1 1544 aa9.41□□□□□ -0.9
CSTF1-207ENST00000498689 UHRF1BP1LA0JNW5 1464 aa9.4□□□□□ -0.9
CSTF1-207ENST00000498689 KCNA4P22459 653 aa9.39□□□□□ -0.91
CSTF1-207ENST00000498689 SPINK5Q9NQ38 1064 aaPredicted RBP9.39□□□□□ -0.91
CSTF1-207ENST00000498689 WDR7Q9Y4E6 1490 aa9.38□□□□□ -0.91
CSTF1-207ENST00000498689 RAPGEF3O95398 923 aa9.37□□□□□ -0.91
CSTF1-207ENST00000498689 PIP4K2BP78356 416 aa9.37□□□□□ -0.91
CSTF1-207ENST00000498689 ARHGEF40Q8TER5 1519 aa9.36□□□□□ -0.91
CSTF1-207ENST00000498689 POTEAQ6S8J7 498 aa9.35□□□□□ -0.91
CSTF1-207ENST00000498689 UACAQ9BZF9 1416 aa9.35□□□□□ -0.91
CSTF1-207ENST00000498689 ZNF335Q9H4Z2 1342 aaPredicted RBP9.34□□□□□ -0.91
CSTF1-207ENST00000498689 RICTORQ6R327 1708 aa9.34□□□□□ -0.92
CSTF1-207ENST00000498689 CEBPAP49715 358 aaPredicted RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms