RNA–Protein interactions for RNA: ENST00000497498.1

CBX3-208, Transcript of chromobox 3, humanhuman

TSL 2

Gene CBX3, Length 922 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-208ENST00000497498 NUBP1P53384 320 aa12.16□□□□□ -0.46
CBX3-208ENST00000497498 VASPP50552 380 aaPredicted RBP12.15□□□□□ -0.46
CBX3-208ENST00000497498 DCBLD2Q96PD2 775 aa12.13□□□□□ -0.47
CBX3-208ENST00000497498 KIF12Q96FN5 646 aa12.09□□□□□ -0.47
CBX3-208ENST00000497498 MS4A3Q96HJ5 214 aa12.08□□□□□ -0.48
CBX3-208ENST00000497498 FAM212AQ96EL1 285 aa12.04□□□□□ -0.48
CBX3-208ENST00000497498 MAP3K13O43283 966 aa12.01□□□□□ -0.49
CBX3-208ENST00000497498 KLHL34Q8N239 644 aa12□□□□□ -0.49
CBX3-208ENST00000497498 LHX8Q68G74 356 aa11.98□□□□□ -0.49
CBX3-208ENST00000497498 ASTLQ6HA08 431 aaPredicted RBP11.98□□□□□ -0.49
CBX3-208ENST00000497498 SGIP1Q9BQI5 828 aa11.97□□□□□ -0.49
CBX3-208ENST00000497498 IFNLR1Q8IU57 520 aaPredicted RBP11.96□□□□□ -0.49
CBX3-208ENST00000497498 ATMINO43313 823 aaPredicted RBP11.95□□□□□ -0.5
CBX3-208ENST00000497498 DCAF8Q5TAQ9 597 aa11.95□□□□□ -0.5
CBX3-208ENST00000497498 PELP1Q8IZL8 1130 aaKnown RBP11.94□□□□□ -0.5
CBX3-208ENST00000497498 TRPC6Q9Y210 931 aa11.92□□□□□ -0.5
CBX3-208ENST00000497498 PCDHB13Q9Y5F0 798 aa11.91□□□□□ -0.5
CBX3-208ENST00000497498 TIE1P35590 1138 aa11.9□□□□□ -0.5
CBX3-208ENST00000497498 GSE1Q14687 1217 aa11.89□□□□□ -0.51
CBX3-208ENST00000497498 BMP2KQ9NSY1 1161 aaPredicted RBP11.89□□□□□ -0.51
CBX3-208ENST00000497498 SPOCK2Q92563 424 aa11.88□□□□□ -0.51
CBX3-208ENST00000497498 ATN1P54259 1190 aaPredicted RBP11.87□□□□□ -0.51
CBX3-208ENST00000497498 IFNL1Q8IU54 200 aa11.87□□□□□ -0.51
CBX3-208ENST00000497498 PYGBP11216 843 aa11.86□□□□□ -0.51
CBX3-208ENST00000497498 SLC39A7Q92504 469 aa11.85□□□□□ -0.51
CBX3-208ENST00000497498 C7P10643 843 aa11.84□□□□□ -0.51
CBX3-208ENST00000497498 TTLL13PA6NNM8 815 aa11.83□□□□□ -0.52
CBX3-208ENST00000497498 METRNQ9UJH8 293 aa11.82□□□□□ -0.52
CBX3-208ENST00000497498 CHRM1P11229 460 aaPredicted RBP11.8□□□□□ -0.52
CBX3-208ENST00000497498 POTEB2H3BUK9 544 aa11.79□□□□□ -0.52
CBX3-208ENST00000497498 TMEM106CQ9BVX2 250 aa11.75□□□□□ -0.53
CBX3-208ENST00000497498 PCDHB8Q9UN66 801 aa11.75□□□□□ -0.53
CBX3-208ENST00000497498 TRIM35Q9UPQ4 493 aa11.74□□□□□ -0.53
CBX3-208ENST00000497498 CIZ1Q9ULV3 898 aaPredicted RBP11.73□□□□□ -0.53
CBX3-208ENST00000497498 ZNF467Q7Z7K2 595 aaPredicted RBP11.72□□□□□ -0.53
CBX3-208ENST00000497498 POTEFA5A3E0 1075 aa11.71□□□□□ -0.53
CBX3-208ENST00000497498 IER5LQ5T953 404 aa11.71□□□□□ -0.53
CBX3-208ENST00000497498 OTUD5Q96G74 571 aa11.7□□□□□ -0.54
CBX3-208ENST00000497498 POTEJP0CG39 1038 aa11.67□□□□□ -0.54
CBX3-208ENST00000497498 COLQQ9Y215 455 aaPredicted RBP11.66□□□□□ -0.54
CBX3-208ENST00000497498 TRIM41Q8WV44 630 aa11.64□□□□□ -0.55
CBX3-208ENST00000497498 SEC24BO95487 1268 aa11.63□□□□□ -0.55
CBX3-208ENST00000497498 PSEN1P49768 467 aa11.6□□□□□ -0.55
CBX3-208ENST00000497498 MAMSTRQ6ZN01 415 aa11.6□□□□□ -0.55
CBX3-208ENST00000497498 IRX5P78411 483 aaPredicted RBP11.59□□□□□ -0.55
CBX3-208ENST00000497498 PDAP1Q13442 181 aaKnown RBP11.59□□□□□ -0.55
CBX3-208ENST00000497498 PLCG2P16885 1265 aa11.55□□□□□ -0.56
CBX3-208ENST00000497498 OCEL1Q9H607 264 aa11.54□□□□□ -0.56
CBX3-208ENST00000497498 SCUBE2Q9NQ36 999 aa11.53□□□□□ -0.56
CBX3-208ENST00000497498 GOLGA2Q08379 1002 aa11.49□□□□□ -0.57
CBX3-208ENST00000497498 MKRN3Q13064 507 aaKnown RBP11.49□□□□□ -0.57
CBX3-208ENST00000497498 RNF25Q96BH1 459 aaPredicted RBP11.48□□□□□ -0.57
CBX3-208ENST00000497498 RIOK3O14730 519 aaKnown RBP11.46□□□□□ -0.57
CBX3-208ENST00000497498 PDCD7Q8N8D1 485 aaKnown RBP11.46□□□□□ -0.57
CBX3-208ENST00000497498 ILDR1Q86SU0 546 aaPredicted RBP11.45□□□□□ -0.58
CBX3-208ENST00000497498 CABP2Q9NPB3 220 aa11.44□□□□□ -0.58
CBX3-208ENST00000497498 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.42□□□□□ -0.587e-7■■■□□ 17.5
CBX3-208ENST00000497498 VGFO15240 615 aaPredicted RBP11.4□□□□□ -0.58
CBX3-208ENST00000497498 PKD2Q13563 968 aa11.4□□□□□ -0.58
CBX3-208ENST00000497498 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.37□□□□□ -0.59
CBX3-208ENST00000497498 ZFP91Q96JP5 570 aaPredicted RBP11.37□□□□□ -0.59
CBX3-208ENST00000497498 ECM2O94769 699 aaPredicted RBP11.36□□□□□ -0.59
CBX3-208ENST00000497498 EFCAB3Q8N7B9 438 aa11.35□□□□□ -0.59
CBX3-208ENST00000497498 L3MBTL3Q96JM7 780 aaPredicted RBP11.35□□□□□ -0.59
CBX3-208ENST00000497498 SLAIN1Q8ND83 568 aa11.34□□□□□ -0.59
CBX3-208ENST00000497498 TAOK2Q9UL54 1235 aa11.33□□□□□ -0.6
CBX3-208ENST00000497498 DPY19L2Q6NUT2 758 aa11.32□□□□□ -0.6
CBX3-208ENST00000497498 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.31□□□□□ -0.6
CBX3-208ENST00000497498 LCE2DQ5TA82 110 aaPredicted RBP11.29□□□□□ -0.6
CBX3-208ENST00000497498 RGL2O15211 777 aa11.28□□□□□ -0.6
CBX3-208ENST00000497498 SOX12O15370 315 aa11.28□□□□□ -0.6
CBX3-208ENST00000497498 FAM163AQ96GL9 167 aaPredicted RBP11.28□□□□□ -0.6
CBX3-208ENST00000497498 C3orf67Q6ZVT6 689 aa11.26□□□□□ -0.61
CBX3-208ENST00000497498 BCL11BQ9C0K0 894 aaPredicted RBP11.26□□□□□ -0.61
CBX3-208ENST00000497498 BOLA1Q9Y3E2 137 aa11.25□□□□□ -0.61
CBX3-208ENST00000497498 POTEMA6NI47 508 aa11.24□□□□□ -0.61
CBX3-208ENST00000497498 POTEGQ6S5H5 508 aa11.23□□□□□ -0.61
CBX3-208ENST00000497498 TMEM121BQ9BXQ6 578 aaPredicted RBP11.22□□□□□ -0.61
CBX3-208ENST00000497498 STK24Q9Y6E0 443 aa11.22□□□□□ -0.61
CBX3-208ENST00000497498 STK25O00506 426 aa11.21□□□□□ -0.61
CBX3-208ENST00000497498 MS4A4AQ96JQ5 239 aa11.21□□□□□ -0.61
CBX3-208ENST00000497498 G3V3G9 751 aa11.2□□□□□ -0.62
CBX3-208ENST00000497498 PHF8Q9UPP1 1060 aa11.2□□□□□ -0.62
CBX3-208ENST00000497498 SNPHO15079 494 aa11.17□□□□□ -0.62
CBX3-208ENST00000497498 FBXO22Q8NEZ5 403 aa11.17□□□□□ -0.62
CBX3-208ENST00000497498 ST18O60284 1047 aa11.16□□□□□ -0.62
CBX3-208ENST00000497498 NLRP6P59044 892 aa11.16□□□□□ -0.62
CBX3-208ENST00000497498 MICALL2Q8IY33 904 aa11.14□□□□□ -0.63
CBX3-208ENST00000497498 MFRPQ9BY79 579 aa11.14□□□□□ -0.63
CBX3-208ENST00000497498 PCDH10Q9P2E7 1040 aa11.09□□□□□ -0.63
CBX3-208ENST00000497498 HS6ST3Q8IZP7 471 aa11.07□□□□□ -0.64
CBX3-208ENST00000497498 TMEM92Q6UXU6 159 aa11.05□□□□□ -0.64
CBX3-208ENST00000497498 HOXB3P14651 431 aaPredicted RBP11.04□□□□□ -0.64
CBX3-208ENST00000497498 CHGAP10645 457 aaKnown RBP11□□□□□ -0.65
CBX3-208ENST00000497498 DNAJC5Q9H3Z4 198 aa10.99□□□□□ -0.65
CBX3-208ENST00000497498 DOK7Q18PE1 504 aa10.97□□□□□ -0.65
CBX3-208ENST00000497498 MARVELD3Q96A59 401 aa10.97□□□□□ -0.65
CBX3-208ENST00000497498 CDAN1Q8IWY9 1227 aa10.96□□□□□ -0.65
CBX3-208ENST00000497498 PPP1R37O75864 691 aa10.95□□□□□ -0.66
CBX3-208ENST00000497498 KIF3CO14782 793 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms