RNA–Protein interactions for RNA: ENST00000497498.1

CBX3-208, Transcript of chromobox 3, humanhuman

TSL 2

Gene CBX3, Length 922 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-208ENST00000497498 AEBP2Q6ZN18 517 aaPredicted RBP24.43■■□□□ 1.5
CBX3-208ENST00000497498 CHIC1Q5VXU3 224 aa23.44■■□□□ 1.34
CBX3-208ENST00000497498 SENP3Q9H4L4 574 aaPredicted RBP20.8■□□□□ 0.92
CBX3-208ENST00000497498 PHF23Q9BUL5 403 aaPredicted RBP20.57■□□□□ 0.88
CBX3-208ENST00000497498 FOXD1Q16676 465 aa19.35■□□□□ 0.69
CBX3-208ENST00000497498 PLPPR3Q6T4P5 718 aa18.83■□□□□ 0.6
CBX3-208ENST00000497498 PPP6R1Q9UPN7 881 aa18.29■□□□□ 0.52
CBX3-208ENST00000497498 ADRA2BP18089 450 aa18.22■□□□□ 0.51
CBX3-208ENST00000497498 PIAS4Q8N2W9 510 aaPredicted RBP18.12■□□□□ 0.49
CBX3-208ENST00000497498 MSH5O43196 834 aa18.02■□□□□ 0.48
CBX3-208ENST00000497498 POTEDQ86YR6 584 aa17.17■□□□□ 0.34
CBX3-208ENST00000497498 SCAF1Q9H7N4 1312 aaKnown RBP16.69■□□□□ 0.26
CBX3-208ENST00000497498 MAPK8IP2Q13387 824 aaPredicted RBP16.66■□□□□ 0.26
CBX3-208ENST00000497498 DMRT2Q9Y5R5 561 aa16.55■□□□□ 0.24
CBX3-208ENST00000497498 PPP4R3CPQ6ZMV5 832 aa16.53■□□□□ 0.24
CBX3-208ENST00000497498 CNKSR2Q8WXI2 1034 aa16.17■□□□□ 0.18
CBX3-208ENST00000497498 HOXD11P31277 338 aaPredicted RBP16.04■□□□□ 0.16
CBX3-208ENST00000497498 RNF216Q9NWF9 866 aaPredicted RBP15.98■□□□□ 0.15
CBX3-208ENST00000497498 NCBP3Q53F19 620 aaKnown RBP15.97■□□□□ 0.15
CBX3-208ENST00000497498 DCAF8L1A6NGE4 600 aa15.77■□□□□ 0.12
CBX3-208ENST00000497498 NPM3O75607 178 aaKnown RBP15.75■□□□□ 0.11
CBX3-208ENST00000497498 KCNA4P22459 653 aa15.65■□□□□ 0.1
CBX3-208ENST00000497498 DNAJC5BQ9UF47 199 aa15.48■□□□□ 0.07
CBX3-208ENST00000497498 RNF39Q9H2S5 420 aa15.41■□□□□ 0.06
CBX3-208ENST00000497498 CACNB1Q02641 598 aaPredicted RBP15.28■□□□□ 0.04
CBX3-208ENST00000497498 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.23■□□□□ 0.031e-10■■■■□ 23
CBX3-208ENST00000497498 C1QBPQ07021 282 aaKnown RBP15.21■□□□□ 0.03
CBX3-208ENST00000497498 SLC4A2P04920 1241 aa14.99□□□□□ -0.01
CBX3-208ENST00000497498 U3KPZ7 1027 aaPredicted RBP14.97□□□□□ -0.01
CBX3-208ENST00000497498 SLC4A1APQ9BWU0 796 aaKnown RBP14.81□□□□□ -0.04
CBX3-208ENST00000497498 SPINK5Q9NQ38 1064 aaPredicted RBP14.66□□□□□ -0.06
CBX3-208ENST00000497498 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.63□□□□□ -0.07
CBX3-208ENST00000497498 HNRNPUL2Q1KMD3 747 aaKnown RBP14.63□□□□□ -0.07
CBX3-208ENST00000497498 CAPN15O75808 1086 aa14.6□□□□□ -0.07
CBX3-208ENST00000497498 APLP2Q06481 763 aa14.56□□□□□ -0.08
CBX3-208ENST00000497498 SAMD1Q6SPF0 538 aaPredicted RBP14.56□□□□□ -0.08
CBX3-208ENST00000497498 MYCNP04198 464 aaPredicted RBP14.55□□□□□ -0.08
CBX3-208ENST00000497498 FOXD4L1Q9NU39 408 aa14.53□□□□□ -0.08
CBX3-208ENST00000497498 DSG3P32926 999 aa14.5□□□□□ -0.09
CBX3-208ENST00000497498 ZNF219Q9P2Y4 722 aaPredicted RBP14.43□□□□□ -0.1
CBX3-208ENST00000497498 TRHP20396 242 aaPredicted RBP14.42□□□□□ -0.1
CBX3-208ENST00000497498 ZBTB22O15209 634 aa14.4□□□□□ -0.1
CBX3-208ENST00000497498 ABCB7O75027 752 aa14.27□□□□□ -0.13
CBX3-208ENST00000497498 ATF5Q9Y2D1 282 aaPredicted RBP14.19□□□□□ -0.14
CBX3-208ENST00000497498 POLA2Q14181 598 aa14.12□□□□□ -0.15
CBX3-208ENST00000497498 ATXN8OSP0DMR3 200 aa14.09□□□□□ -0.15
CBX3-208ENST00000497498 CSRNP3Q8WYN3 585 aa13.97□□□□□ -0.17
CBX3-208ENST00000497498 ZBTB12Q9Y330 459 aaPredicted RBP13.87□□□□□ -0.19
CBX3-208ENST00000497498 EHMT2Q96KQ7 1210 aa13.85□□□□□ -0.19
CBX3-208ENST00000497498 RBM42Q9BTD8 480 aaKnown RBP13.82□□□□□ -0.2
CBX3-208ENST00000497498 OSCARQ8IYS5 282 aa13.65□□□□□ -0.22
CBX3-208ENST00000497498 FBLN2P98095 1184 aa13.61□□□□□ -0.23
CBX3-208ENST00000497498 MKRN4PQ13434 485 aaPredicted RBP13.57□□□□□ -0.24
CBX3-208ENST00000497498 AKT1S1Q96B36 256 aa13.57□□□□□ -0.24
CBX3-208ENST00000497498 POTEHQ6S545 545 aa13.49□□□□□ -0.25
CBX3-208ENST00000497498 SPDYE2BA6NHP3 402 aa13.46□□□□□ -0.25
CBX3-208ENST00000497498 SPDYE6P0CI01 402 aa13.46□□□□□ -0.25
CBX3-208ENST00000497498 SPDYE2Q495Y8 402 aa13.46□□□□□ -0.25
CBX3-208ENST00000497498 REM2Q8IYK8 340 aaPredicted RBP13.44□□□□□ -0.26
CBX3-208ENST00000497498 CHRDL2Q6WN34 429 aa13.42□□□□□ -0.26
CBX3-208ENST00000497498 ZNF692Q9BU19 519 aaPredicted RBP13.32□□□□□ -0.28
CBX3-208ENST00000497498 SSUH2Q9Y2M2 353 aa13.32□□□□□ -0.28
CBX3-208ENST00000497498 PITPNM1O00562 1244 aa13.28□□□□□ -0.28
CBX3-208ENST00000497498 PIP4P2Q8N4L2 257 aa13.16□□□□□ -0.3
CBX3-208ENST00000497498 SPDYE1Q8NFV5 336 aaPredicted RBP13.16□□□□□ -0.3
CBX3-208ENST00000497498 FXR2P51116 673 aaKnown RBP eCLIP13.14□□□□□ -0.314e-11■□□□□ 8.2
CBX3-208ENST00000497498 PABPN1Q86U42 306 aaKnown RBP eCLIP13.13□□□□□ -0.31
CBX3-208ENST00000497498 CLEC11AQ9Y240 323 aa13.08□□□□□ -0.32
CBX3-208ENST00000497498 SPDYE4A6NLX3 237 aa13.03□□□□□ -0.32
CBX3-208ENST00000497498 PRR29P0C7W0 189 aa12.93□□□□□ -0.34
CBX3-208ENST00000497498 PRKAR2AP13861 404 aaKnown RBP12.93□□□□□ -0.34
CBX3-208ENST00000497498 STAG3Q9UJ98 1225 aa12.84□□□□□ -0.35
CBX3-208ENST00000497498 HAX1O00165 279 aa12.83□□□□□ -0.36
CBX3-208ENST00000497498 CHADLQ6NUI6 762 aa12.81□□□□□ -0.36
CBX3-208ENST00000497498 PROM2Q8N271 834 aa12.81□□□□□ -0.36
CBX3-208ENST00000497498 SP7Q8TDD2 431 aaPredicted RBP12.77□□□□□ -0.37
CBX3-208ENST00000497498 EVX2Q03828 476 aa12.72□□□□□ -0.37
CBX3-208ENST00000497498 C19orf67A6NJJ6 358 aa12.7□□□□□ -0.38
CBX3-208ENST00000497498 CREBZFQ9NS37 354 aa12.69□□□□□ -0.38
CBX3-208ENST00000497498 FARP1Q9Y4F1 1045 aaPredicted RBP12.69□□□□□ -0.38
CBX3-208ENST00000497498 FKBP8Q14318 412 aa12.61□□□□□ -0.39
CBX3-208ENST00000497498 CD44P16070 742 aaKnown RBP12.53□□□□□ -0.4
CBX3-208ENST00000497498 MNX1P50219 401 aaPredicted RBP12.53□□□□□ -0.4
CBX3-208ENST00000497498 GABBR2O75899 941 aa12.44□□□□□ -0.42
CBX3-208ENST00000497498 NPM1P06748 294 aaKnown RBP eCLIP12.44□□□□□ -0.42
CBX3-208ENST00000497498 MIER1Q8N108 512 aa12.39□□□□□ -0.43
CBX3-208ENST00000497498 ZRANB1Q9UGI0 708 aa12.39□□□□□ -0.43
CBX3-208ENST00000497498 CLCN6P51797 869 aa12.37□□□□□ -0.43
CBX3-208ENST00000497498 ZNF579Q8NAF0 562 aaKnown RBP12.37□□□□□ -0.43
CBX3-208ENST00000497498 PLEKHG5O94827 1062 aa12.35□□□□□ -0.43
CBX3-208ENST00000497498 PAK3O75914 559 aaPredicted RBP12.33□□□□□ -0.44
CBX3-208ENST00000497498 PLCD3Q8N3E9 789 aa12.31□□□□□ -0.44
CBX3-208ENST00000497498 FBXO3Q9UK99 471 aa12.31□□□□□ -0.44
CBX3-208ENST00000497498 PHF12Q96QT6 1004 aa12.23□□□□□ -0.45
CBX3-208ENST00000497498 ZBTB47Q9UFB7 747 aaPredicted RBP12.23□□□□□ -0.45
CBX3-208ENST00000497498 TSPYL2Q9H2G4 693 aaPredicted RBP12.21□□□□□ -0.45
CBX3-208ENST00000497498 GALR2O43603 387 aaPredicted RBP12.19□□□□□ -0.46
CBX3-208ENST00000497498 POTEIP0CG38 1075 aa12.19□□□□□ -0.46
CBX3-208ENST00000497498 RASEFQ8IZ41 740 aa12.19□□□□□ -0.46
CBX3-208ENST00000497498 CCDC61Q9Y6R9 512 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms