RNA–Protein interactions for RNA: ENST00000495688.5

PTPN7-217, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 1 (best)

Gene PTPN7, Length 2,689 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-217ENST00000495688 FAM50AQ14320 339 aaKnown RBP18.88■□□□□ 0.61
PTPN7-217ENST00000495688 MAP3K1Q13233 1512 aa18.85■□□□□ 0.61
PTPN7-217ENST00000495688 FANCD2Q9BXW9 1451 aa18.84■□□□□ 0.61
PTPN7-217ENST00000495688 RAD54L2Q9Y4B4 1467 aa18.84■□□□□ 0.61
PTPN7-217ENST00000495688 SETD5Q9C0A6 1442 aa18.83■□□□□ 0.61
PTPN7-217ENST00000495688 SIN3AQ96ST3 1273 aa18.83■□□□□ 0.6
PTPN7-217ENST00000495688 PCF11O94913 1555 aaKnown RBP18.83■□□□□ 0.6
PTPN7-217ENST00000495688 CC2D2AQ9P2K1 1620 aa18.82■□□□□ 0.6
PTPN7-217ENST00000495688 FHOD3Q2V2M9 1422 aa18.82■□□□□ 0.6
PTPN7-217ENST00000495688 KCNH8Q96L42 1107 aa18.8■□□□□ 0.6
PTPN7-217ENST00000495688 FHAD1B1AJZ9 1412 aa18.8■□□□□ 0.6
PTPN7-217ENST00000495688 CFAP43Q8NDM7 1665 aa18.76■□□□□ 0.59
PTPN7-217ENST00000495688 NESP48681 1621 aa18.75■□□□□ 0.59
PTPN7-217ENST00000495688 POLA1P09884 1462 aaPredicted RBP18.75■□□□□ 0.59
PTPN7-217ENST00000495688 WDR97A6NE52 1622 aa18.74■□□□□ 0.59
PTPN7-217ENST00000495688 SUPT16HQ9Y5B9 1047 aaKnown RBP18.73■□□□□ 0.59
PTPN7-217ENST00000495688 TOPBP1Q92547 1522 aa18.72■□□□□ 0.59
PTPN7-217ENST00000495688 DNMBPQ6XZF7 1577 aa18.72■□□□□ 0.59
PTPN7-217ENST00000495688 ABCA10Q8WWZ4 1543 aa18.71■□□□□ 0.59
PTPN7-217ENST00000495688 DDX10Q13206 875 aaKnown RBP18.69■□□□□ 0.58
PTPN7-217ENST00000495688 HIRIP3Q9BW71 556 aaPredicted RBP18.69■□□□□ 0.58
PTPN7-217ENST00000495688 FYCO1Q9BQS8 1478 aa18.68■□□□□ 0.58
PTPN7-217ENST00000495688 CASKIN1Q8WXD9 1431 aa18.67■□□□□ 0.58
PTPN7-217ENST00000495688 EFCAB5A4FU69 1503 aa18.64■□□□□ 0.57
PTPN7-217ENST00000495688 CTTNBP2Q8WZ74 1663 aa18.62■□□□□ 0.57
PTPN7-217ENST00000495688 TDRD9Q8NDG6 1382 aaKnown RBP18.61■□□□□ 0.57
PTPN7-217ENST00000495688 CUL7Q14999 1698 aa18.6■□□□□ 0.57
PTPN7-217ENST00000495688 AQRO60306 1485 aaKnown RBP eCLIP18.59■□□□□ 0.573e-7■■■■■ 30.8
PTPN7-217ENST00000495688 FGD6Q6ZV73 1430 aa18.59■□□□□ 0.57
PTPN7-217ENST00000495688 PPP1R15AO75807 674 aaPredicted RBP18.58■□□□□ 0.57
PTPN7-217ENST00000495688 SNAPC4Q5SXM2 1469 aa18.58■□□□□ 0.57
PTPN7-217ENST00000495688 URB2Q14146 1524 aaKnown RBP18.57■□□□□ 0.56
PTPN7-217ENST00000495688 MTUS2Q5JR59 1369 aa18.57■□□□□ 0.56
PTPN7-217ENST00000495688 PTPRKQ15262 1439 aa18.57■□□□□ 0.56
PTPN7-217ENST00000495688 FMN1Q68DA7 1419 aa18.57■□□□□ 0.56
PTPN7-217ENST00000495688 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.56■□□□□ 0.56
PTPN7-217ENST00000495688 TIMELESSQ9UNS1 1208 aa18.54■□□□□ 0.56
PTPN7-217ENST00000495688 LRRIQ1Q96JM4 1722 aa18.53■□□□□ 0.56
PTPN7-217ENST00000495688 CCDC18Q5T9S5 1454 aa18.52■□□□□ 0.56
PTPN7-217ENST00000495688 DNAJC5BQ9UF47 199 aa18.52■□□□□ 0.55
PTPN7-217ENST00000495688 TONSLQ96HA7 1378 aa18.48■□□□□ 0.55
PTPN7-217ENST00000495688 GAPVD1Q14C86 1478 aa18.48■□□□□ 0.55
PTPN7-217ENST00000495688 NCOA2Q15596 1464 aa18.48■□□□□ 0.55
PTPN7-217ENST00000495688 HFM1A2PYH4 1435 aa18.47■□□□□ 0.55
PTPN7-217ENST00000495688 SAMD9Q5K651 1589 aa18.47■□□□□ 0.55
PTPN7-217ENST00000495688 BCANQ96GW7 911 aa18.47■□□□□ 0.55
PTPN7-217ENST00000495688 ABCA5Q8WWZ7 1642 aa18.47■□□□□ 0.55
PTPN7-217ENST00000495688 PTPN23Q9H3S7 1636 aa18.46■□□□□ 0.55
PTPN7-217ENST00000495688 GRIN2BQ13224 1484 aa18.45■□□□□ 0.54
PTPN7-217ENST00000495688 NAIPQ13075 1403 aa18.45■□□□□ 0.54
PTPN7-217ENST00000495688 UACAQ9BZF9 1416 aa18.45■□□□□ 0.54
PTPN7-217ENST00000495688 LAMC3Q9Y6N6 1575 aa18.45■□□□□ 0.54
PTPN7-217ENST00000495688 TRIM52Q96A61 297 aa18.45■□□□□ 0.54
PTPN7-217ENST00000495688 MYOM3Q5VTT5 1437 aa18.44■□□□□ 0.54
PTPN7-217ENST00000495688 TSHZ2Q9NRE2 1034 aa18.44■□□□□ 0.54
PTPN7-217ENST00000495688 ANP32CO43423 234 aa18.42■□□□□ 0.54
PTPN7-217ENST00000495688 CHIC2Q9UKJ5 165 aa18.42■□□□□ 0.54
PTPN7-217ENST00000495688 FKBP8Q14318 412 aa18.41■□□□□ 0.54
PTPN7-217ENST00000495688 RRP7BPQ9NSQ0 103 aa18.41■□□□□ 0.54
PTPN7-217ENST00000495688 MAGI3Q5TCQ9 1506 aa18.4■□□□□ 0.54
PTPN7-217ENST00000495688 SUPT6HQ7KZ85 1726 aaKnown RBP18.39■□□□□ 0.53
PTPN7-217ENST00000495688 ARID3CA6NKF2 412 aa18.38■□□□□ 0.53
PTPN7-217ENST00000495688 MYT1Q01538 1121 aa18.37■□□□□ 0.53
PTPN7-217ENST00000495688 CCER2I3L3R5 266 aa18.36■□□□□ 0.53
PTPN7-217ENST00000495688 PDS5BQ9NTI5 1447 aa18.36■□□□□ 0.53
PTPN7-217ENST00000495688 EHBP1L1Q8N3D4 1523 aa18.36■□□□□ 0.53
PTPN7-217ENST00000495688 KIF21AQ7Z4S6 1674 aa18.35■□□□□ 0.53
PTPN7-217ENST00000495688 UGGT2Q9NYU1 1516 aa18.35■□□□□ 0.53
PTPN7-217ENST00000495688 KDM5BQ9UGL1 1544 aa18.34■□□□□ 0.53
PTPN7-217ENST00000495688 THOC2Q8NI27 1593 aaKnown RBP18.33■□□□□ 0.52
PTPN7-217ENST00000495688 ARHGEF11O15085 1522 aa18.32■□□□□ 0.52
PTPN7-217ENST00000495688 TARBP1Q13395 1621 aaKnown RBP18.31■□□□□ 0.52
PTPN7-217ENST00000495688 DENND4BO75064 1496 aaPredicted RBP18.3■□□□□ 0.52
PTPN7-217ENST00000495688 KDM6BO15054 1643 aa18.29■□□□□ 0.52
PTPN7-217ENST00000495688 CDK13Q14004 1512 aaKnown RBP18.28■□□□□ 0.52
PTPN7-217ENST00000495688 FOXD1Q16676 465 aa18.27■□□□□ 0.52
PTPN7-217ENST00000495688 EPRSP07814 1512 aaKnown RBP18.26■□□□□ 0.51
PTPN7-217ENST00000495688 HSPA5P11021 654 aaKnown RBP18.25■□□□□ 0.51
PTPN7-217ENST00000495688 WASHC2AQ641Q2 1341 aa18.25■□□□□ 0.51
PTPN7-217ENST00000495688 TCOF1Q13428 1488 aaKnown RBP18.24■□□□□ 0.51
PTPN7-217ENST00000495688 NEFLP07196 543 aa18.24■□□□□ 0.51
PTPN7-217ENST00000495688 IQGAP2Q13576 1575 aa18.23■□□□□ 0.51
PTPN7-217ENST00000495688 HECW1Q76N89 1606 aa18.23■□□□□ 0.51
PTPN7-217ENST00000495688 PBRM1Q86U86 1689 aa18.23■□□□□ 0.51
PTPN7-217ENST00000495688 MPHOSPH9Q99550 1183 aa18.22■□□□□ 0.51
PTPN7-217ENST00000495688 GCC2Q8IWJ2 1684 aa18.22■□□□□ 0.51
PTPN7-217ENST00000495688 L3MBTL2Q969R5 705 aa18.19■□□□□ 0.5
PTPN7-217ENST00000495688 HNRNPUQ00839 825 aaKnown RBP eCLIP18.19■□□□□ 0.5
PTPN7-217ENST00000495688 ADAMTS12P58397 1594 aa18.17■□□□□ 0.5
PTPN7-217ENST00000495688 WDR62O43379 1518 aa18.17■□□□□ 0.5
PTPN7-217ENST00000495688 ZNF644Q9H582 1327 aaPredicted RBP18.17■□□□□ 0.5
PTPN7-217ENST00000495688 C11orf95C9JLR9 678 aaPredicted RBP18.16■□□□□ 0.5
PTPN7-217ENST00000495688 EIF4G2P78344 907 aaKnown RBP eCLIP18.16■□□□□ 0.5
PTPN7-217ENST00000495688 MIA2Q96PC5 1412 aa18.15■□□□□ 0.5
PTPN7-217ENST00000495688 AKNAQ7Z591 1439 aa18.15■□□□□ 0.5
PTPN7-217ENST00000495688 CCDC184Q52MB2 194 aa18.15■□□□□ 0.5
PTPN7-217ENST00000495688 ZNF608Q9ULD9 1512 aaPredicted RBP18.12■□□□□ 0.49
PTPN7-217ENST00000495688 IRX6P78412 446 aaPredicted RBP18.12■□□□□ 0.49
PTPN7-217ENST00000495688 NBPF8Q3BBV2 869 aa18.1■□□□□ 0.49
PTPN7-217ENST00000495688 DAPK1P53355 1430 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms