RNA–Protein interactions for RNA: ENST00000492386.5

SEMA4D-220, Transcript of semaphorin 4D, humanhuman

TSL 2

Gene SEMA4D, Length 2,396 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-220ENST00000492386 FHAD1B1AJZ9 1412 aa23.58■■□□□ 1.37
SEMA4D-220ENST00000492386 ITGAEP38570 1179 aa23.58■■□□□ 1.37
SEMA4D-220ENST00000492386 PCF11O94913 1555 aaKnown RBP23.58■■□□□ 1.36
SEMA4D-220ENST00000492386 RAD54L2Q9Y4B4 1467 aa23.56■■□□□ 1.36
SEMA4D-220ENST00000492386 TOPBP1Q92547 1522 aa23.56■■□□□ 1.36
SEMA4D-220ENST00000492386 RAB3GAP2Q9H2M9 1393 aa23.56■■□□□ 1.36
SEMA4D-220ENST00000492386 POLA1P09884 1462 aaPredicted RBP23.55■■□□□ 1.36
SEMA4D-220ENST00000492386 PHLDB1Q86UU1 1377 aa23.54■■□□□ 1.36
SEMA4D-220ENST00000492386 MAPKBP1O60336 1514 aa23.53■■□□□ 1.36
SEMA4D-220ENST00000492386 CUL7Q14999 1698 aa23.51■■□□□ 1.35
SEMA4D-220ENST00000492386 NESP48681 1621 aa23.5■■□□□ 1.35
SEMA4D-220ENST00000492386 EFCAB5A4FU69 1503 aa23.49■■□□□ 1.35
SEMA4D-220ENST00000492386 SETD5Q9C0A6 1442 aa23.48■■□□□ 1.35
SEMA4D-220ENST00000492386 CTTNBP2Q8WZ74 1663 aa23.48■■□□□ 1.35
SEMA4D-220ENST00000492386 FHOD3Q2V2M9 1422 aa23.47■■□□□ 1.35
SEMA4D-220ENST00000492386 P3H3Q8IVL6 736 aa23.47■■□□□ 1.35
SEMA4D-220ENST00000492386 FYCO1Q9BQS8 1478 aa23.46■■□□□ 1.35
SEMA4D-220ENST00000492386 WDR97A6NE52 1622 aa23.43■■□□□ 1.34
SEMA4D-220ENST00000492386 AQRO60306 1485 aaKnown RBP eCLIP23.43■■□□□ 1.34
SEMA4D-220ENST00000492386 CASKIN1Q8WXD9 1431 aa23.43■■□□□ 1.34
SEMA4D-220ENST00000492386 FAM50AQ14320 339 aaKnown RBP23.38■■□□□ 1.33
SEMA4D-220ENST00000492386 LAMC3Q9Y6N6 1575 aa23.37■■□□□ 1.33
SEMA4D-220ENST00000492386 URB2Q14146 1524 aaKnown RBP23.37■■□□□ 1.33
SEMA4D-220ENST00000492386 ATP1B4Q9UN42 357 aaPredicted RBP23.35■■□□□ 1.33
SEMA4D-220ENST00000492386 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.33■■□□□ 1.33
SEMA4D-220ENST00000492386 ABCA5Q8WWZ7 1642 aa23.33■■□□□ 1.32
SEMA4D-220ENST00000492386 SNAPC4Q5SXM2 1469 aa23.31■■□□□ 1.32
SEMA4D-220ENST00000492386 FMN1Q68DA7 1419 aa23.31■■□□□ 1.32
SEMA4D-220ENST00000492386 SAMD9Q5K651 1589 aa23.29■■□□□ 1.32
SEMA4D-220ENST00000492386 LRRIQ1Q96JM4 1722 aa23.25■■□□□ 1.31
SEMA4D-220ENST00000492386 SIN3AQ96ST3 1273 aa23.25■■□□□ 1.31
SEMA4D-220ENST00000492386 FGD6Q6ZV73 1430 aa23.24■■□□□ 1.31
SEMA4D-220ENST00000492386 TDRD9Q8NDG6 1382 aaKnown RBP23.23■■□□□ 1.31
SEMA4D-220ENST00000492386 GAPVD1Q14C86 1478 aa23.22■■□□□ 1.31
SEMA4D-220ENST00000492386 TIMELESSQ9UNS1 1208 aa23.19■■□□□ 1.3
SEMA4D-220ENST00000492386 GRIN2BQ13224 1484 aa23.17■■□□□ 1.3
SEMA4D-220ENST00000492386 PDS5BQ9NTI5 1447 aa23.16■■□□□ 1.3
SEMA4D-220ENST00000492386 MTUS2Q5JR59 1369 aa23.16■■□□□ 1.3
SEMA4D-220ENST00000492386 THOC2Q8NI27 1593 aaKnown RBP23.15■■□□□ 1.3
SEMA4D-220ENST00000492386 KIF21AQ7Z4S6 1674 aa23.15■■□□□ 1.3
SEMA4D-220ENST00000492386 PTPRKQ15262 1439 aa23.12■■□□□ 1.29
SEMA4D-220ENST00000492386 TARBP1Q13395 1621 aaKnown RBP23.12■■□□□ 1.29
SEMA4D-220ENST00000492386 NCOA2Q15596 1464 aa23.11■■□□□ 1.29
SEMA4D-220ENST00000492386 CCDC18Q5T9S5 1454 aa23.11■■□□□ 1.29
SEMA4D-220ENST00000492386 HFM1A2PYH4 1435 aa23.1■■□□□ 1.29
SEMA4D-220ENST00000492386 PTPN23Q9H3S7 1636 aa23.1■■□□□ 1.29
SEMA4D-220ENST00000492386 SUPT6HQ7KZ85 1726 aaKnown RBP23.1■■□□□ 1.29
SEMA4D-220ENST00000492386 MYOM3Q5VTT5 1437 aa23.09■■□□□ 1.29
SEMA4D-220ENST00000492386 PPP1R15AO75807 674 aaPredicted RBP23.08■■□□□ 1.29
SEMA4D-220ENST00000492386 EHBP1L1Q8N3D4 1523 aa23.08■■□□□ 1.29
SEMA4D-220ENST00000492386 KCNH8Q96L42 1107 aa23.06■■□□□ 1.28
SEMA4D-220ENST00000492386 DNAJC5BQ9UF47 199 aa23.06■■□□□ 1.28
SEMA4D-220ENST00000492386 UACAQ9BZF9 1416 aa23.05■■□□□ 1.28
SEMA4D-220ENST00000492386 DDX10Q13206 875 aaKnown RBP23.04■■□□□ 1.28
SEMA4D-220ENST00000492386 SUPT16HQ9Y5B9 1047 aaKnown RBP23.04■■□□□ 1.28
SEMA4D-220ENST00000492386 ARHGEF11O15085 1522 aa23.03■■□□□ 1.28
SEMA4D-220ENST00000492386 UGGT2Q9NYU1 1516 aa23.03■■□□□ 1.28
SEMA4D-220ENST00000492386 NAIPQ13075 1403 aa23.03■■□□□ 1.28
SEMA4D-220ENST00000492386 PBRM1Q86U86 1689 aa23.03■■□□□ 1.28
SEMA4D-220ENST00000492386 MAGI3Q5TCQ9 1506 aa23.02■■□□□ 1.28
SEMA4D-220ENST00000492386 TONSLQ96HA7 1378 aa22.96■■□□□ 1.27
SEMA4D-220ENST00000492386 HECW1Q76N89 1606 aa22.96■■□□□ 1.27
SEMA4D-220ENST00000492386 IQGAP2Q13576 1575 aa22.95■■□□□ 1.26
SEMA4D-220ENST00000492386 ADAMTS12P58397 1594 aa22.94■■□□□ 1.26
SEMA4D-220ENST00000492386 HIRIP3Q9BW71 556 aaPredicted RBP22.93■■□□□ 1.26
SEMA4D-220ENST00000492386 TCOF1Q13428 1488 aaKnown RBP22.93■■□□□ 1.26
SEMA4D-220ENST00000492386 GCC2Q8IWJ2 1684 aa22.91■■□□□ 1.26
SEMA4D-220ENST00000492386 KDM5BQ9UGL1 1544 aa22.9■■□□□ 1.26
SEMA4D-220ENST00000492386 EPRSP07814 1512 aaKnown RBP22.89■■□□□ 1.25
SEMA4D-220ENST00000492386 WDR62O43379 1518 aa22.85■■□□□ 1.25
SEMA4D-220ENST00000492386 CCER2I3L3R5 266 aa22.84■■□□□ 1.25
SEMA4D-220ENST00000492386 CDK13Q14004 1512 aaKnown RBP22.84■■□□□ 1.25
SEMA4D-220ENST00000492386 MRC2Q9UBG0 1479 aa22.84■■□□□ 1.25
SEMA4D-220ENST00000492386 AKNAQ7Z591 1439 aa22.84■■□□□ 1.25
SEMA4D-220ENST00000492386 DENND4BO75064 1496 aaPredicted RBP22.82■■□□□ 1.24
SEMA4D-220ENST00000492386 RRP7BPQ9NSQ0 103 aa22.81■■□□□ 1.24
SEMA4D-220ENST00000492386 KDM6BO15054 1643 aa22.8■■□□□ 1.24
SEMA4D-220ENST00000492386 MIA2Q96PC5 1412 aa22.8■■□□□ 1.24
SEMA4D-220ENST00000492386 ANP32CO43423 234 aa22.79■■□□□ 1.24
SEMA4D-220ENST00000492386 CHIC2Q9UKJ5 165 aa22.78■■□□□ 1.24
SEMA4D-220ENST00000492386 ZNF608Q9ULD9 1512 aaPredicted RBP22.72■■□□□ 1.23
SEMA4D-220ENST00000492386 IFT140Q96RY7 1462 aa22.71■■□□□ 1.23
SEMA4D-220ENST00000492386 KIAA0556O60303 1618 aa22.71■■□□□ 1.23
SEMA4D-220ENST00000492386 DISP1Q96F81 1524 aa22.69■■□□□ 1.22
SEMA4D-220ENST00000492386 TRIM52Q96A61 297 aa22.69■■□□□ 1.22
SEMA4D-220ENST00000492386 KIAA0586Q9BVV6 1533 aa22.68■■□□□ 1.22
SEMA4D-220ENST00000492386 ARID3CA6NKF2 412 aa22.68■■□□□ 1.22
SEMA4D-220ENST00000492386 MPHOSPH9Q99550 1183 aa22.66■■□□□ 1.22
SEMA4D-220ENST00000492386 MYT1Q01538 1121 aa22.65■■□□□ 1.22
SEMA4D-220ENST00000492386 DNMT1P26358 1616 aaKnown RBP22.65■■□□□ 1.22
SEMA4D-220ENST00000492386 NUP153P49790 1475 aaKnown RBP22.65■■□□□ 1.22
SEMA4D-220ENST00000492386 DAPK1P53355 1430 aa22.64■■□□□ 1.22
SEMA4D-220ENST00000492386 ROCK1Q13464 1354 aa22.63■■□□□ 1.21
SEMA4D-220ENST00000492386 TSHZ2Q9NRE2 1034 aa22.63■■□□□ 1.21
SEMA4D-220ENST00000492386 RAPGEF6Q8TEU7 1601 aa22.63■■□□□ 1.21
SEMA4D-220ENST00000492386 FKBP8Q14318 412 aa22.62■■□□□ 1.21
SEMA4D-220ENST00000492386 HSPA5P11021 654 aaKnown RBP22.61■■□□□ 1.21
SEMA4D-220ENST00000492386 ABCC5O15440 1437 aa22.6■■□□□ 1.21
SEMA4D-220ENST00000492386 GRIN2AQ12879 1464 aa22.6■■□□□ 1.21
SEMA4D-220ENST00000492386 WASHC2AQ641Q2 1341 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms