RNA–Protein interactions for RNA: ENST00000490391.1

PDLIM1-203, Transcript of PDZ and LIM domain 1, humanhuman

TSL 2

Gene PDLIM1, Length 458 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-203ENST00000490391 FXR2P51116 673 aaKnown RBP eCLIP14.3□□□□□ -0.12
PDLIM1-203ENST00000490391 WIZO95785 1651 aa14.29□□□□□ -0.12
PDLIM1-203ENST00000490391 PITPNM1O00562 1244 aa14.26□□□□□ -0.13
PDLIM1-203ENST00000490391 IFT140Q96RY7 1462 aa14.25□□□□□ -0.13
PDLIM1-203ENST00000490391 RSF1Q96T23 1441 aaPredicted RBP14.23□□□□□ -0.13
PDLIM1-203ENST00000490391 EIF4G3O43432 1585 aaKnown RBP14.22□□□□□ -0.13
PDLIM1-203ENST00000490391 CHD1O14646 1710 aa14.21□□□□□ -0.13
PDLIM1-203ENST00000490391 ATF5Q9Y2D1 282 aaPredicted RBP14.2□□□□□ -0.14
PDLIM1-203ENST00000490391 EVX2Q03828 476 aa14.16□□□□□ -0.14
PDLIM1-203ENST00000490391 PRDM2Q13029 1718 aa14.14□□□□□ -0.15
PDLIM1-203ENST00000490391 TOPBP1Q92547 1522 aa14.13□□□□□ -0.15
PDLIM1-203ENST00000490391 AQRO60306 1485 aaKnown RBP eCLIP14.1□□□□□ -0.151e-6■■■■□ 26.3
PDLIM1-203ENST00000490391 TARBP1Q13395 1621 aaKnown RBP14.08□□□□□ -0.16
PDLIM1-203ENST00000490391 TOP2AP11388 1531 aaKnown RBP14.07□□□□□ -0.16
PDLIM1-203ENST00000490391 CLASP1Q7Z460 1538 aa14.07□□□□□ -0.16
PDLIM1-203ENST00000490391 FBLN2P98095 1184 aa14.04□□□□□ -0.16
PDLIM1-203ENST00000490391 DNMBPQ6XZF7 1577 aa14.02□□□□□ -0.16
PDLIM1-203ENST00000490391 ABCC8Q09428 1581 aa14.01□□□□□ -0.17
PDLIM1-203ENST00000490391 FOXD4L1Q9NU39 408 aa13.98□□□□□ -0.17
PDLIM1-203ENST00000490391 ILDR1Q86SU0 546 aaPredicted RBP13.96□□□□□ -0.17
PDLIM1-203ENST00000490391 POLA1P09884 1462 aaPredicted RBP13.95□□□□□ -0.18
PDLIM1-203ENST00000490391 SYNJ1O43426 1573 aa13.94□□□□□ -0.18
PDLIM1-203ENST00000490391 GAPVD1Q14C86 1478 aa13.93□□□□□ -0.18
PDLIM1-203ENST00000490391 SNAPC4Q5SXM2 1469 aa13.93□□□□□ -0.18
PDLIM1-203ENST00000490391 CCDC88BA6NC98 1476 aa13.92□□□□□ -0.18
PDLIM1-203ENST00000490391 TDRD9Q8NDG6 1382 aaKnown RBP13.9□□□□□ -0.18
PDLIM1-203ENST00000490391 RAD54L2Q9Y4B4 1467 aa13.9□□□□□ -0.18
PDLIM1-203ENST00000490391 PRKAR2AP13861 404 aaKnown RBP13.88□□□□□ -0.19
PDLIM1-203ENST00000490391 MAGI1Q96QZ7 1491 aaPredicted RBP13.87□□□□□ -0.19
PDLIM1-203ENST00000490391 WDR97A6NE52 1622 aa13.86□□□□□ -0.19
PDLIM1-203ENST00000490391 SPDYE2BA6NHP3 402 aa13.86□□□□□ -0.19
PDLIM1-203ENST00000490391 C19orf67A6NJJ6 358 aa13.86□□□□□ -0.19
PDLIM1-203ENST00000490391 SPDYE6P0CI01 402 aa13.86□□□□□ -0.19
PDLIM1-203ENST00000490391 SPDYE2Q495Y8 402 aa13.86□□□□□ -0.19
PDLIM1-203ENST00000490391 LHX8Q68G74 356 aa13.85□□□□□ -0.19
PDLIM1-203ENST00000490391 CHMP7Q8WUX9 453 aaPredicted RBP13.85□□□□□ -0.19
PDLIM1-203ENST00000490391 SYNJ2O15056 1496 aa13.83□□□□□ -0.2
PDLIM1-203ENST00000490391 SOGA1O94964 1423 aa13.82□□□□□ -0.2
PDLIM1-203ENST00000490391 GABBR2O75899 941 aa13.82□□□□□ -0.2
PDLIM1-203ENST00000490391 KIF13AQ9H1H9 1805 aa13.82□□□□□ -0.2
PDLIM1-203ENST00000490391 ERCC6L2Q5T890 1561 aa13.81□□□□□ -0.2
PDLIM1-203ENST00000490391 GRIN2BQ13224 1484 aa13.8□□□□□ -0.2
PDLIM1-203ENST00000490391 SLC4A1APQ9BWU0 796 aaKnown RBP13.78□□□□□ -0.2
PDLIM1-203ENST00000490391 KDM4FA0A1W2PPD8 638 aa13.77□□□□□ -0.21
PDLIM1-203ENST00000490391 SPDYE1Q8NFV5 336 aaPredicted RBP13.77□□□□□ -0.21
PDLIM1-203ENST00000490391 FGD5Q6ZNL6 1462 aa13.76□□□□□ -0.21
PDLIM1-203ENST00000490391 CLEC11AQ9Y240 323 aa13.76□□□□□ -0.21
PDLIM1-203ENST00000490391 PBRM1Q86U86 1689 aa13.71□□□□□ -0.21
PDLIM1-203ENST00000490391 CEP170Q5SW79 1584 aa13.7□□□□□ -0.22
PDLIM1-203ENST00000490391 CUX1P39880 1505 aa13.67□□□□□ -0.22
PDLIM1-203ENST00000490391 SHROOM2Q13796 1616 aa13.66□□□□□ -0.22
PDLIM1-203ENST00000490391 NUP160Q12769 1436 aa13.64□□□□□ -0.23
PDLIM1-203ENST00000490391 GRIN2AQ12879 1464 aa13.64□□□□□ -0.23
PDLIM1-203ENST00000490391 ABCC10Q5T3U5 1492 aa13.64□□□□□ -0.23
PDLIM1-203ENST00000490391 ATXN8OSP0DMR3 200 aa13.64□□□□□ -0.23
PDLIM1-203ENST00000490391 ABCA5Q8WWZ7 1642 aa13.64□□□□□ -0.23
PDLIM1-203ENST00000490391 KDM6BO15054 1643 aa13.61□□□□□ -0.23
PDLIM1-203ENST00000490391 DIP2BQ9P265 1576 aa13.6□□□□□ -0.23
PDLIM1-203ENST00000490391 SSUH2Q9Y2M2 353 aa13.6□□□□□ -0.23
PDLIM1-203ENST00000490391 FAM69CQ0P6D2 419 aa13.59□□□□□ -0.23
PDLIM1-203ENST00000490391 ABCA10Q8WWZ4 1543 aa13.59□□□□□ -0.23
PDLIM1-203ENST00000490391 MAPKBP1O60336 1514 aa13.58□□□□□ -0.24
PDLIM1-203ENST00000490391 ADAMTS12P58397 1594 aa13.58□□□□□ -0.24
PDLIM1-203ENST00000490391 CHADLQ6NUI6 762 aa13.57□□□□□ -0.24
PDLIM1-203ENST00000490391 ZNF692Q9BU19 519 aaPredicted RBP13.57□□□□□ -0.24
PDLIM1-203ENST00000490391 ZBTB22O15209 634 aa13.54□□□□□ -0.24
PDLIM1-203ENST00000490391 HECW2Q9P2P5 1572 aa13.53□□□□□ -0.24
PDLIM1-203ENST00000490391 MKRN4PQ13434 485 aaPredicted RBP13.52□□□□□ -0.25
PDLIM1-203ENST00000490391 PRG4Q92954 1404 aaPredicted RBP13.51□□□□□ -0.25
PDLIM1-203ENST00000490391 POTEIP0CG38 1075 aa13.51□□□□□ -0.25
PDLIM1-203ENST00000490391 ADGRL1O94910 1474 aa13.5□□□□□ -0.25
PDLIM1-203ENST00000490391 PLSCR2Q9NRY7 297 aa13.49□□□□□ -0.25
PDLIM1-203ENST00000490391 TSPOAP1O95153 1857 aa13.48□□□□□ -0.25
PDLIM1-203ENST00000490391 ADCY10Q96PN6 1610 aa13.48□□□□□ -0.25
PDLIM1-203ENST00000490391 FHAD1B1AJZ9 1412 aa13.47□□□□□ -0.25
PDLIM1-203ENST00000490391 PRR29P0C7W0 189 aa13.46□□□□□ -0.25
PDLIM1-203ENST00000490391 JPH4Q96JJ6 628 aa13.43□□□□□ -0.26
PDLIM1-203ENST00000490391 NPM1P06748 294 aaKnown RBP eCLIP13.42□□□□□ -0.26
PDLIM1-203ENST00000490391 FBXO41Q8TF61 875 aa13.41□□□□□ -0.26
PDLIM1-203ENST00000490391 PPRC1Q5VV67 1664 aaKnown RBP13.4□□□□□ -0.26
PDLIM1-203ENST00000490391 CD44P16070 742 aaKnown RBP13.4□□□□□ -0.26
PDLIM1-203ENST00000490391 CLCN6P51797 869 aa13.4□□□□□ -0.26
PDLIM1-203ENST00000490391 RUSC2Q8N2Y8 1516 aa13.39□□□□□ -0.27
PDLIM1-203ENST00000490391 ERICH3Q5RHP9 1530 aa13.39□□□□□ -0.27
PDLIM1-203ENST00000490391 WRNQ14191 1432 aaPredicted RBP eCLIP13.37□□□□□ -0.27
PDLIM1-203ENST00000490391 COL17A1Q9UMD9 1497 aaPredicted RBP13.36□□□□□ -0.27
PDLIM1-203ENST00000490391 FARP1Q9Y4F1 1045 aaPredicted RBP13.32□□□□□ -0.28
PDLIM1-203ENST00000490391 GLI2P10070 1586 aa13.32□□□□□ -0.28
PDLIM1-203ENST00000490391 DCBLD2Q96PD2 775 aa13.29□□□□□ -0.28
PDLIM1-203ENST00000490391 BIVM-ERCC5R4GMW8 1640 aa13.28□□□□□ -0.28
PDLIM1-203ENST00000490391 TOP2BQ02880 1626 aa13.28□□□□□ -0.28
PDLIM1-203ENST00000490391 ASXL2Q76L83 1435 aa13.26□□□□□ -0.29
PDLIM1-203ENST00000490391 ABCC2Q92887 1545 aa13.25□□□□□ -0.29
PDLIM1-203ENST00000490391 LMTK3Q96Q04 1460 aa13.25□□□□□ -0.29
PDLIM1-203ENST00000490391 PLB1Q6P1J6 1458 aa13.24□□□□□ -0.29
PDLIM1-203ENST00000490391 MAP3K4Q9Y6R4 1608 aa13.23□□□□□ -0.29
PDLIM1-203ENST00000490391 KIAA0586Q9BVV6 1533 aa13.23□□□□□ -0.29
PDLIM1-203ENST00000490391 PTPRGP23470 1445 aa13.2□□□□□ -0.3
PDLIM1-203ENST00000490391 EPRSP07814 1512 aaKnown RBP13.19□□□□□ -0.3
PDLIM1-203ENST00000490391 CUL7Q14999 1698 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms