RNA–Protein interactions for RNA: ENST00000489378.5

SSBP1-212, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 2

Gene SSBP1, Length 1,434 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-212ENST00000489378 WDR97A6NE52 1622 aa17.44■□□□□ 0.38
SSBP1-212ENST00000489378 GRIN2BQ13224 1484 aa17.43■□□□□ 0.38
SSBP1-212ENST00000489378 FGD5Q6ZNL6 1462 aa17.43■□□□□ 0.38
SSBP1-212ENST00000489378 ERCC6L2Q5T890 1561 aa17.38■□□□□ 0.37
SSBP1-212ENST00000489378 C1QBPQ07021 282 aaKnown RBP17.35■□□□□ 0.37
SSBP1-212ENST00000489378 CUX1P39880 1505 aa17.33■□□□□ 0.36
SSBP1-212ENST00000489378 PBRM1Q86U86 1689 aa17.32■□□□□ 0.36
SSBP1-212ENST00000489378 ILDR1Q86SU0 546 aaPredicted RBP17.3■□□□□ 0.36
SSBP1-212ENST00000489378 KIF13AQ9H1H9 1805 aa17.3■□□□□ 0.36
SSBP1-212ENST00000489378 CEP170Q5SW79 1584 aa17.25■□□□□ 0.35
SSBP1-212ENST00000489378 ABCA5Q8WWZ7 1642 aa17.21■□□□□ 0.35
SSBP1-212ENST00000489378 GRIN2AQ12879 1464 aa17.21■□□□□ 0.35
SSBP1-212ENST00000489378 KDM4FA0A1W2PPD8 638 aa17.21■□□□□ 0.34
SSBP1-212ENST00000489378 NUP160Q12769 1436 aa17.18■□□□□ 0.34
SSBP1-212ENST00000489378 ABCA10Q8WWZ4 1543 aa17.18■□□□□ 0.34
SSBP1-212ENST00000489378 SHROOM2Q13796 1616 aa17.17■□□□□ 0.34
SSBP1-212ENST00000489378 KCNA4P22459 653 aa17.16■□□□□ 0.34
SSBP1-212ENST00000489378 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.14■□□□□ 0.33
SSBP1-212ENST00000489378 FAM69CQ0P6D2 419 aa17.13■□□□□ 0.33
SSBP1-212ENST00000489378 ADAMTS12P58397 1594 aa17.13■□□□□ 0.33
SSBP1-212ENST00000489378 ABCC10Q5T3U5 1492 aa17.11■□□□□ 0.33
SSBP1-212ENST00000489378 PRG4Q92954 1404 aaPredicted RBP17.07■□□□□ 0.32
SSBP1-212ENST00000489378 KDM6BO15054 1643 aa17.06■□□□□ 0.32
SSBP1-212ENST00000489378 DIP2BQ9P265 1576 aa17.06■□□□□ 0.32
SSBP1-212ENST00000489378 FHAD1B1AJZ9 1412 aa17.04■□□□□ 0.32
SSBP1-212ENST00000489378 MAPKBP1O60336 1514 aa17.03■□□□□ 0.32
SSBP1-212ENST00000489378 JPH4Q96JJ6 628 aa17■□□□□ 0.31
SSBP1-212ENST00000489378 TSPOAP1O95153 1857 aa16.99■□□□□ 0.31
SSBP1-212ENST00000489378 NPM1P06748 294 aaKnown RBP eCLIP16.99■□□□□ 0.31
SSBP1-212ENST00000489378 WRNQ14191 1432 aaPredicted RBP eCLIP16.98■□□□□ 0.311e-7■□□□□ 10.2
SSBP1-212ENST00000489378 ADCY10Q96PN6 1610 aa16.97■□□□□ 0.31
SSBP1-212ENST00000489378 ERICH3Q5RHP9 1530 aa16.93■□□□□ 0.3
SSBP1-212ENST00000489378 RUSC2Q8N2Y8 1516 aa16.91■□□□□ 0.3
SSBP1-212ENST00000489378 ADGRL1O94910 1474 aa16.9■□□□□ 0.3
SSBP1-212ENST00000489378 U3KPZ7 1027 aaPredicted RBP16.89■□□□□ 0.29
SSBP1-212ENST00000489378 HECW2Q9P2P5 1572 aa16.86■□□□□ 0.29
SSBP1-212ENST00000489378 TOP2BQ02880 1626 aa16.86■□□□□ 0.29
SSBP1-212ENST00000489378 BIVM-ERCC5R4GMW8 1640 aa16.86■□□□□ 0.29
SSBP1-212ENST00000489378 PPRC1Q5VV67 1664 aaKnown RBP16.8■□□□□ 0.28
SSBP1-212ENST00000489378 SLC4A2P04920 1241 aa16.77■□□□□ 0.27
SSBP1-212ENST00000489378 COL17A1Q9UMD9 1497 aaPredicted RBP16.75■□□□□ 0.27
SSBP1-212ENST00000489378 KIAA0586Q9BVV6 1533 aa16.73■□□□□ 0.27
SSBP1-212ENST00000489378 GLI2P10070 1586 aa16.72■□□□□ 0.27
SSBP1-212ENST00000489378 ASXL2Q76L83 1435 aa16.72■□□□□ 0.27
SSBP1-212ENST00000489378 TTBK1Q5TCY1 1321 aaPredicted RBP16.71■□□□□ 0.27
SSBP1-212ENST00000489378 PTPRGP23470 1445 aa16.71■□□□□ 0.27
SSBP1-212ENST00000489378 ABCC2Q92887 1545 aa16.7■□□□□ 0.26
SSBP1-212ENST00000489378 FBXO41Q8TF61 875 aa16.69■□□□□ 0.26
SSBP1-212ENST00000489378 PLB1Q6P1J6 1458 aa16.68■□□□□ 0.26
SSBP1-212ENST00000489378 SPINK5Q9NQ38 1064 aaPredicted RBP16.65■□□□□ 0.26
SSBP1-212ENST00000489378 CUL7Q14999 1698 aa16.65■□□□□ 0.26
SSBP1-212ENST00000489378 MAP3K4Q9Y6R4 1608 aa16.62■□□□□ 0.25
SSBP1-212ENST00000489378 TNIKQ9UKE5 1360 aa16.62■□□□□ 0.25
SSBP1-212ENST00000489378 EPRSP07814 1512 aaKnown RBP16.61■□□□□ 0.25
SSBP1-212ENST00000489378 IGF1RP08069 1367 aa16.6■□□□□ 0.25
SSBP1-212ENST00000489378 UHRF1BP1LA0JNW5 1464 aa16.59■□□□□ 0.25
SSBP1-212ENST00000489378 TEX14Q8IWB6 1497 aa16.59■□□□□ 0.25
SSBP1-212ENST00000489378 CARMIL2Q6F5E8 1435 aa16.57■□□□□ 0.24
SSBP1-212ENST00000489378 SUPT5HO00267 1087 aaKnown RBP16.57■□□□□ 0.24
SSBP1-212ENST00000489378 UACAQ9BZF9 1416 aa16.56■□□□□ 0.24
SSBP1-212ENST00000489378 DSG3P32926 999 aa16.53■□□□□ 0.24
SSBP1-212ENST00000489378 KDM5BQ9UGL1 1544 aa16.53■□□□□ 0.24
SSBP1-212ENST00000489378 CAPN15O75808 1086 aa16.52■□□□□ 0.23
SSBP1-212ENST00000489378 ZCCHC11Q5TAX3 1644 aaKnown RBP16.5■□□□□ 0.23
SSBP1-212ENST00000489378 KIF27Q86VH2 1401 aa16.5■□□□□ 0.23
SSBP1-212ENST00000489378 DISP1Q96F81 1524 aa16.49■□□□□ 0.23
SSBP1-212ENST00000489378 IQGAP2Q13576 1575 aa16.49■□□□□ 0.23
SSBP1-212ENST00000489378 KIF21BO75037 1637 aa16.47■□□□□ 0.23
SSBP1-212ENST00000489378 CARMIL1Q5VZK9 1371 aa16.46■□□□□ 0.23
SSBP1-212ENST00000489378 WDR7Q9Y4E6 1490 aa16.44■□□□□ 0.22
SSBP1-212ENST00000489378 LMTK3Q96Q04 1460 aa16.44■□□□□ 0.22
SSBP1-212ENST00000489378 MAGI3Q5TCQ9 1506 aa16.42■□□□□ 0.22
SSBP1-212ENST00000489378 CD109Q6YHK3 1445 aa16.41■□□□□ 0.22
SSBP1-212ENST00000489378 PTPRMP28827 1452 aa16.4■□□□□ 0.22
SSBP1-212ENST00000489378 CFAP43Q8NDM7 1665 aa16.38■□□□□ 0.21
SSBP1-212ENST00000489378 UGGT2Q9NYU1 1516 aa16.37■□□□□ 0.21
SSBP1-212ENST00000489378 ADAMTSL3P82987 1691 aa16.37■□□□□ 0.21
SSBP1-212ENST00000489378 KCNH8Q96L42 1107 aa16.36■□□□□ 0.21
SSBP1-212ENST00000489378 KIAA0556O60303 1618 aa16.36■□□□□ 0.21
SSBP1-212ENST00000489378 PCF11O94913 1555 aaKnown RBP16.33■□□□□ 0.21
SSBP1-212ENST00000489378 ILDR2Q71H61 639 aa16.31■□□□□ 0.2
SSBP1-212ENST00000489378 ARAP3Q8WWN8 1544 aa16.31■□□□□ 0.2
SSBP1-212ENST00000489378 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.28■□□□□ 0.2
SSBP1-212ENST00000489378 HNRNPUL2Q1KMD3 747 aaKnown RBP16.28■□□□□ 0.2
SSBP1-212ENST00000489378 SOCS7O14512 581 aa16.27■□□□□ 0.19
SSBP1-212ENST00000489378 MADDQ8WXG6 1647 aa16.27■□□□□ 0.19
SSBP1-212ENST00000489378 APLP2Q06481 763 aa16.26■□□□□ 0.19
SSBP1-212ENST00000489378 BCORL1Q5H9F3 1711 aa16.26■□□□□ 0.19
SSBP1-212ENST00000489378 ABCA8O94911 1581 aa16.25■□□□□ 0.19
SSBP1-212ENST00000489378 HSPA2P54652 639 aa16.25■□□□□ 0.19
SSBP1-212ENST00000489378 CERKQ8TCT0 537 aa16.24■□□□□ 0.19
SSBP1-212ENST00000489378 DISP3Q9P2K9 1392 aa16.24■□□□□ 0.19
SSBP1-212ENST00000489378 RAPGEF2Q9Y4G8 1499 aa16.23■□□□□ 0.19
SSBP1-212ENST00000489378 RAPGEF3O95398 923 aa16.23■□□□□ 0.19
SSBP1-212ENST00000489378 ZNF219Q9P2Y4 722 aaPredicted RBP16.23■□□□□ 0.19
SSBP1-212ENST00000489378 SAMD1Q6SPF0 538 aaPredicted RBP16.21■□□□□ 0.19
SSBP1-212ENST00000489378 ARID4BQ4LE39 1312 aaPredicted RBP16.21■□□□□ 0.19
SSBP1-212ENST00000489378 RIMS1Q86UR5 1692 aaKnown RBP16.2■□□□□ 0.18
SSBP1-212ENST00000489378 ARID3CA6NKF2 412 aa16.18■□□□□ 0.18
SSBP1-212ENST00000489378 ABCB7O75027 752 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms