RNA–Protein interactions for RNA: ENST00000477739.1

CMC1-209, Transcript of C-X9-C motif containing 1, humanhuman

TSL 1 (best)

Gene CMC1, Length 3,749 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMC1-209ENST00000477739 IGF1RP08069 1367 aa13.95□□□□□ -0.18
CMC1-209ENST00000477739 ERICH3Q5RHP9 1530 aa13.93□□□□□ -0.18
CMC1-209ENST00000477739 BIVM-ERCC5R4GMW8 1640 aa13.93□□□□□ -0.18
CMC1-209ENST00000477739 FGD5Q6ZNL6 1462 aa13.91□□□□□ -0.18
CMC1-209ENST00000477739 CCNB3Q8WWL7 1395 aa13.9□□□□□ -0.18
CMC1-209ENST00000477739 FANCD2Q9BXW9 1451 aa13.88□□□□□ -0.19
CMC1-209ENST00000477739 ARHGAP35Q9NRY4 1499 aa13.87□□□□□ -0.19
CMC1-209ENST00000477739 CHIC2Q9UKJ5 165 aa13.87□□□□□ -0.19
CMC1-209ENST00000477739 ERICH6Q7L0X2 663 aa13.86□□□□□ -0.19
CMC1-209ENST00000477739 CC2D2AQ9P2K1 1620 aa13.84□□□□□ -0.19
CMC1-209ENST00000477739 DHX57Q6P158 1386 aaKnown RBP13.84□□□□□ -0.19
CMC1-209ENST00000477739 RAD54L2Q9Y4B4 1467 aa13.84□□□□□ -0.19
CMC1-209ENST00000477739 ZNF326Q5BKZ1 582 aaKnown RBP13.84□□□□□ -0.19
CMC1-209ENST00000477739 NESP48681 1621 aa13.81□□□□□ -0.2
CMC1-209ENST00000477739 ANP32CO43423 234 aa13.8□□□□□ -0.2
CMC1-209ENST00000477739 CLSPNQ9HAW4 1339 aa13.8□□□□□ -0.2
CMC1-209ENST00000477739 TDRD9Q8NDG6 1382 aaKnown RBP13.8□□□□□ -0.2
CMC1-209ENST00000477739 HNRNPUQ00839 825 aaKnown RBP eCLIP13.79□□□□□ -0.2
CMC1-209ENST00000477739 FHOD3Q2V2M9 1422 aa13.79□□□□□ -0.2
CMC1-209ENST00000477739 TSHZ2Q9NRE2 1034 aa13.79□□□□□ -0.2
CMC1-209ENST00000477739 FHAD1B1AJZ9 1412 aa13.78□□□□□ -0.2
CMC1-209ENST00000477739 RAB3GAP2Q9H2M9 1393 aa13.76□□□□□ -0.21
CMC1-209ENST00000477739 FAM9BQ8IZU0 186 aa13.76□□□□□ -0.21
CMC1-209ENST00000477739 DNAJC5BQ9UF47 199 aa13.76□□□□□ -0.21
CMC1-209ENST00000477739 RRBP1Q9P2E9 1410 aaKnown RBP13.75□□□□□ -0.21
CMC1-209ENST00000477739 MYT1Q01538 1121 aa13.75□□□□□ -0.21
CMC1-209ENST00000477739 MTUS2Q5JR59 1369 aa13.74□□□□□ -0.21
CMC1-209ENST00000477739 RRP7BPQ9NSQ0 103 aa13.73□□□□□ -0.21
CMC1-209ENST00000477739 PHLDB1Q86UU1 1377 aa13.72□□□□□ -0.21
CMC1-209ENST00000477739 POLA1P09884 1462 aaPredicted RBP13.71□□□□□ -0.21
CMC1-209ENST00000477739 SALL2Q9Y467 1007 aaPredicted RBP13.71□□□□□ -0.21
CMC1-209ENST00000477739 FOXD1Q16676 465 aa13.71□□□□□ -0.22
CMC1-209ENST00000477739 TOPBP1Q92547 1522 aa13.7□□□□□ -0.22
CMC1-209ENST00000477739 SETD5Q9C0A6 1442 aa13.7□□□□□ -0.22
CMC1-209ENST00000477739 LRRC9Q6ZRR7 1453 aa13.69□□□□□ -0.22
CMC1-209ENST00000477739 PDS5BQ9NTI5 1447 aa13.67□□□□□ -0.22
CMC1-209ENST00000477739 TIAM1Q13009 1591 aa13.65□□□□□ -0.22
CMC1-209ENST00000477739 TONSLQ96HA7 1378 aa13.65□□□□□ -0.22
CMC1-209ENST00000477739 DNMBPQ6XZF7 1577 aa13.65□□□□□ -0.22
CMC1-209ENST00000477739 FBLN2P98095 1184 aa13.64□□□□□ -0.23
CMC1-209ENST00000477739 ABCA10Q8WWZ4 1543 aa13.63□□□□□ -0.23
CMC1-209ENST00000477739 FMN1Q68DA7 1419 aa13.62□□□□□ -0.23
CMC1-209ENST00000477739 ANP32EQ9BTT0 268 aa13.61□□□□□ -0.23
CMC1-209ENST00000477739 NBR1Q14596 966 aa13.61□□□□□ -0.23
CMC1-209ENST00000477739 GAPVD1Q14C86 1478 aa13.6□□□□□ -0.23
CMC1-209ENST00000477739 RBM19Q9Y4C8 960 aaKnown RBP13.6□□□□□ -0.23
CMC1-209ENST00000477739 ZNF777Q9ULD5 760 aaPredicted RBP13.59□□□□□ -0.23
CMC1-209ENST00000477739 PCF11O94913 1555 aaKnown RBP13.58□□□□□ -0.24
CMC1-209ENST00000477739 B4GALNT3Q6L9W6 998 aa13.58□□□□□ -0.24
CMC1-209ENST00000477739 PRDM2Q13029 1718 aa13.58□□□□□ -0.24
CMC1-209ENST00000477739 URB2Q14146 1524 aaKnown RBP13.58□□□□□ -0.24
CMC1-209ENST00000477739 CASKIN1Q8WXD9 1431 aa13.57□□□□□ -0.24
CMC1-209ENST00000477739 CDK11AQ9UQ88 783 aaPredicted RBP13.56□□□□□ -0.24
CMC1-209ENST00000477739 NPM2Q86SE8 214 aaKnown RBP13.55□□□□□ -0.24
CMC1-209ENST00000477739 FYCO1Q9BQS8 1478 aa13.54□□□□□ -0.24
CMC1-209ENST00000477739 MAP3K1Q13233 1512 aa13.53□□□□□ -0.24
CMC1-209ENST00000477739 MRS2Q9HD23 443 aa13.53□□□□□ -0.24
CMC1-209ENST00000477739 AQRO60306 1485 aaKnown RBP eCLIP13.52□□□□□ -0.243e-6■■■■■ 28.9
CMC1-209ENST00000477739 FGD6Q6ZV73 1430 aa13.51□□□□□ -0.25
CMC1-209ENST00000477739 EFCAB5A4FU69 1503 aa13.51□□□□□ -0.25
CMC1-209ENST00000477739 LAMC3Q9Y6N6 1575 aa13.51□□□□□ -0.25
CMC1-209ENST00000477739 PPP1R15AO75807 674 aaPredicted RBP13.5□□□□□ -0.25
CMC1-209ENST00000477739 BCL11AQ9H165 835 aa13.48□□□□□ -0.25
CMC1-209ENST00000477739 KDM2AQ9Y2K7 1162 aa13.48□□□□□ -0.25
CMC1-209ENST00000477739 CCDC184Q52MB2 194 aa13.48□□□□□ -0.25
CMC1-209ENST00000477739 CHMP7Q8WUX9 453 aaPredicted RBP13.48□□□□□ -0.25
CMC1-209ENST00000477739 CUL7Q14999 1698 aa13.47□□□□□ -0.25
CMC1-209ENST00000477739 TIMELESSQ9UNS1 1208 aa13.47□□□□□ -0.25
CMC1-209ENST00000477739 MAPKBP1O60336 1514 aa13.46□□□□□ -0.25
CMC1-209ENST00000477739 NCOA2Q15596 1464 aa13.45□□□□□ -0.26
CMC1-209ENST00000477739 CCDC18Q5T9S5 1454 aa13.45□□□□□ -0.26
CMC1-209ENST00000477739 HSPA5P11021 654 aaKnown RBP13.44□□□□□ -0.26
CMC1-209ENST00000477739 MYOM3Q5VTT5 1437 aa13.43□□□□□ -0.26
CMC1-209ENST00000477739 WDR97A6NE52 1622 aa13.42□□□□□ -0.26
CMC1-209ENST00000477739 SENP3Q9H4L4 574 aaPredicted RBP13.4□□□□□ -0.26
CMC1-209ENST00000477739 ERCC6Q03468 1493 aa13.39□□□□□ -0.27
CMC1-209ENST00000477739 PTPRKQ15262 1439 aa13.39□□□□□ -0.27
CMC1-209ENST00000477739 CFAP43Q8NDM7 1665 aa13.39□□□□□ -0.27
CMC1-209ENST00000477739 SNAPC4Q5SXM2 1469 aa13.39□□□□□ -0.27
CMC1-209ENST00000477739 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.38□□□□□ -0.277e-10■□□□□ 8.6
CMC1-209ENST00000477739 EIF4G2P78344 907 aaKnown RBP eCLIP13.38□□□□□ -0.27
CMC1-209ENST00000477739 CTTNBP2Q8WZ74 1663 aa13.38□□□□□ -0.27
CMC1-209ENST00000477739 SLC4A1APQ9BWU0 796 aaKnown RBP13.38□□□□□ -0.27
CMC1-209ENST00000477739 UACAQ9BZF9 1416 aa13.37□□□□□ -0.27
CMC1-209ENST00000477739 MPHOSPH9Q99550 1183 aa13.36□□□□□ -0.27
CMC1-209ENST00000477739 CFDP1Q9UEE9 299 aaPredicted RBP13.36□□□□□ -0.27
CMC1-209ENST00000477739 HFM1A2PYH4 1435 aa13.36□□□□□ -0.27
CMC1-209ENST00000477739 GRIN2BQ13224 1484 aa13.35□□□□□ -0.27
CMC1-209ENST00000477739 ZNF644Q9H582 1327 aaPredicted RBP13.35□□□□□ -0.27
CMC1-209ENST00000477739 MRC2Q9UBG0 1479 aa13.35□□□□□ -0.27
CMC1-209ENST00000477739 RTN4Q9NQC3 1192 aaKnown RBP13.35□□□□□ -0.27
CMC1-209ENST00000477739 NAIPQ13075 1403 aa13.35□□□□□ -0.27
CMC1-209ENST00000477739 KIF21AQ7Z4S6 1674 aa13.34□□□□□ -0.27
CMC1-209ENST00000477739 L3MBTL2Q969R5 705 aa13.34□□□□□ -0.27
CMC1-209ENST00000477739 CCDC136Q96JN2 1154 aa13.34□□□□□ -0.27
CMC1-209ENST00000477739 MSH5O43196 834 aa13.34□□□□□ -0.27
CMC1-209ENST00000477739 ABCA5Q8WWZ7 1642 aa13.33□□□□□ -0.27
CMC1-209ENST00000477739 CDK13Q14004 1512 aaKnown RBP13.33□□□□□ -0.28
CMC1-209ENST00000477739 ZNF608Q9ULD9 1512 aaPredicted RBP13.33□□□□□ -0.28
CMC1-209ENST00000477739 RGL3Q3MIN7 710 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms