RNA–Protein interactions for RNA: ENST00000473230.1

RCL1-209, Transcript of RNA terminal phosphate cyclase like 1, humanhuman

TSL 3

Gene RCL1, Length 441 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RCL1-209ENST00000473230 NCAPD3P42695 1498 aa12.78□□□□□ -0.36
RCL1-209ENST00000473230 SMARCA2P51531 1590 aa12.74□□□□□ -0.37
RCL1-209ENST00000473230 BAZ1AQ9NRL2 1556 aaPredicted RBP12.74□□□□□ -0.37
RCL1-209ENST00000473230 ATAD2BQ9ULI0 1458 aa12.74□□□□□ -0.37
RCL1-209ENST00000473230 ZNF579Q8NAF0 562 aaKnown RBP12.73□□□□□ -0.37
RCL1-209ENST00000473230 SMARCA4P51532 1647 aa12.73□□□□□ -0.37
RCL1-209ENST00000473230 HMGXB3Q12766 1538 aa12.68□□□□□ -0.38
RCL1-209ENST00000473230 CREBZFQ9NS37 354 aa12.68□□□□□ -0.38
RCL1-209ENST00000473230 STAG3Q9UJ98 1225 aa12.66□□□□□ -0.38
RCL1-209ENST00000473230 BAZ1BQ9UIG0 1483 aaKnown RBP12.65□□□□□ -0.38
RCL1-209ENST00000473230 GALR2O43603 387 aaPredicted RBP12.65□□□□□ -0.38
RCL1-209ENST00000473230 PEG3Q9GZU2 1588 aa12.62□□□□□ -0.39
RCL1-209ENST00000473230 PAK3O75914 559 aaPredicted RBP12.61□□□□□ -0.39
RCL1-209ENST00000473230 MROH2BQ7Z745 1585 aa12.6□□□□□ -0.39
RCL1-209ENST00000473230 ERCC6Q03468 1493 aa12.58□□□□□ -0.4
RCL1-209ENST00000473230 OTUD5Q96G74 571 aa12.56□□□□□ -0.4
RCL1-209ENST00000473230 PHF12Q96QT6 1004 aa12.55□□□□□ -0.4
RCL1-209ENST00000473230 SPDYE4A6NLX3 237 aa12.51□□□□□ -0.41
RCL1-209ENST00000473230 POTEB2H3BUK9 544 aa12.51□□□□□ -0.41
RCL1-209ENST00000473230 NPM1P06748 294 aaKnown RBP eCLIP12.49□□□□□ -0.41
RCL1-209ENST00000473230 CUX2O14529 1486 aa12.47□□□□□ -0.41
RCL1-209ENST00000473230 LAMC3Q9Y6N6 1575 aa12.45□□□□□ -0.42
RCL1-209ENST00000473230 NESP48681 1621 aa12.44□□□□□ -0.42
RCL1-209ENST00000473230 POTEMA6NI47 508 aa12.44□□□□□ -0.42
RCL1-209ENST00000473230 RSF1Q96T23 1441 aaPredicted RBP12.44□□□□□ -0.42
RCL1-209ENST00000473230 PDS5BQ9NTI5 1447 aa12.44□□□□□ -0.42
RCL1-209ENST00000473230 PELP1Q8IZL8 1130 aaKnown RBP12.42□□□□□ -0.42
RCL1-209ENST00000473230 CADPSQ9ULU8 1353 aa12.42□□□□□ -0.42
RCL1-209ENST00000473230 WIZO95785 1651 aa12.42□□□□□ -0.42
RCL1-209ENST00000473230 POTEGQ6S5H5 508 aa12.39□□□□□ -0.43
RCL1-209ENST00000473230 MNX1P50219 401 aaPredicted RBP12.37□□□□□ -0.43
RCL1-209ENST00000473230 METRNQ9UJH8 293 aa12.36□□□□□ -0.43
RCL1-209ENST00000473230 MS4A3Q96HJ5 214 aa12.35□□□□□ -0.43
RCL1-209ENST00000473230 TOP2AP11388 1531 aaKnown RBP12.34□□□□□ -0.43
RCL1-209ENST00000473230 SLC39A7Q92504 469 aa12.32□□□□□ -0.44
RCL1-209ENST00000473230 ASTLQ6HA08 431 aaPredicted RBP12.31□□□□□ -0.44
RCL1-209ENST00000473230 ATMINO43313 823 aaPredicted RBP12.3□□□□□ -0.44
RCL1-209ENST00000473230 C7P10643 843 aa12.3□□□□□ -0.44
RCL1-209ENST00000473230 TSPYL2Q9H2G4 693 aaPredicted RBP12.29□□□□□ -0.44
RCL1-209ENST00000473230 THOC2Q8NI27 1593 aaKnown RBP12.29□□□□□ -0.44
RCL1-209ENST00000473230 CFTRP13569 1480 aa12.28□□□□□ -0.44
RCL1-209ENST00000473230 DNAJC5Q9H3Z4 198 aa12.28□□□□□ -0.44
RCL1-209ENST00000473230 MRC2Q9UBG0 1479 aa12.27□□□□□ -0.44
RCL1-209ENST00000473230 CEP164Q9UPV0 1460 aa12.27□□□□□ -0.45
RCL1-209ENST00000473230 MAMSTRQ6ZN01 415 aa12.26□□□□□ -0.45
RCL1-209ENST00000473230 FANCD2Q9BXW9 1451 aa12.26□□□□□ -0.45
RCL1-209ENST00000473230 KIF21AQ7Z4S6 1674 aa12.25□□□□□ -0.45
RCL1-209ENST00000473230 POTEJP0CG39 1038 aa12.24□□□□□ -0.45
RCL1-209ENST00000473230 PCDH10Q9P2E7 1040 aa12.22□□□□□ -0.45
RCL1-209ENST00000473230 FAM163AQ96GL9 167 aaPredicted RBP12.21□□□□□ -0.45
RCL1-209ENST00000473230 WDR62O43379 1518 aa12.21□□□□□ -0.46
RCL1-209ENST00000473230 SCUBE2Q9NQ36 999 aa12.2□□□□□ -0.46
RCL1-209ENST00000473230 CCDC88BA6NC98 1476 aa12.2□□□□□ -0.46
RCL1-209ENST00000473230 ATN1P54259 1190 aaPredicted RBP12.19□□□□□ -0.46
RCL1-209ENST00000473230 CCDC61Q9Y6R9 512 aa12.15□□□□□ -0.46
RCL1-209ENST00000473230 SUPT5HO00267 1087 aaKnown RBP12.13□□□□□ -0.47
RCL1-209ENST00000473230 KIF12Q96FN5 646 aa12.12□□□□□ -0.47
RCL1-209ENST00000473230 BMP2KQ9NSY1 1161 aaPredicted RBP12.09□□□□□ -0.47
RCL1-209ENST00000473230 URB2Q14146 1524 aaKnown RBP12.09□□□□□ -0.47
RCL1-209ENST00000473230 LCE2DQ5TA82 110 aaPredicted RBP12.08□□□□□ -0.48
RCL1-209ENST00000473230 ABCC8Q09428 1581 aa12.08□□□□□ -0.48
RCL1-209ENST00000473230 PLEKHG5O94827 1062 aa12.07□□□□□ -0.48
RCL1-209ENST00000473230 TRPC6Q9Y210 931 aa12.07□□□□□ -0.48
RCL1-209ENST00000473230 MAP3K13O43283 966 aa12.06□□□□□ -0.48
RCL1-209ENST00000473230 POTEFA5A3E0 1075 aa12.05□□□□□ -0.48
RCL1-209ENST00000473230 PRDM2Q13029 1718 aa12.05□□□□□ -0.48
RCL1-209ENST00000473230 SEC24BO95487 1268 aa12.04□□□□□ -0.48
RCL1-209ENST00000473230 MIER1Q8N108 512 aa12.04□□□□□ -0.48
RCL1-209ENST00000473230 IFT140Q96RY7 1462 aa12.02□□□□□ -0.48
RCL1-209ENST00000473230 TIE1P35590 1138 aa12.02□□□□□ -0.49
RCL1-209ENST00000473230 TOPBP1Q92547 1522 aa12.01□□□□□ -0.49
RCL1-209ENST00000473230 PROM2Q8N271 834 aa12.01□□□□□ -0.49
RCL1-209ENST00000473230 RASEFQ8IZ41 740 aa11.99□□□□□ -0.49
RCL1-209ENST00000473230 DNMBPQ6XZF7 1577 aa11.99□□□□□ -0.49
RCL1-209ENST00000473230 COLQQ9Y215 455 aaPredicted RBP11.97□□□□□ -0.49
RCL1-209ENST00000473230 TTLL13PA6NNM8 815 aa11.96□□□□□ -0.49
RCL1-209ENST00000473230 FKBP8Q14318 412 aa11.95□□□□□ -0.5
RCL1-209ENST00000473230 TRIM35Q9UPQ4 493 aa11.92□□□□□ -0.5
RCL1-209ENST00000473230 ZNF608Q9ULD9 1512 aaPredicted RBP11.91□□□□□ -0.5
RCL1-209ENST00000473230 CDAN1Q8IWY9 1227 aa11.91□□□□□ -0.5
RCL1-209ENST00000473230 POLA1P09884 1462 aaPredicted RBP11.9□□□□□ -0.5
RCL1-209ENST00000473230 PCDHB13Q9Y5F0 798 aa11.9□□□□□ -0.5
RCL1-209ENST00000473230 SOGA1O94964 1423 aa11.89□□□□□ -0.51
RCL1-209ENST00000473230 PLCD3Q8N3E9 789 aa11.89□□□□□ -0.51
RCL1-209ENST00000473230 IER5LQ5T953 404 aa11.86□□□□□ -0.51
RCL1-209ENST00000473230 SLAIN1Q8ND83 568 aa11.86□□□□□ -0.51
RCL1-209ENST00000473230 EIF4G3O43432 1585 aaKnown RBP11.86□□□□□ -0.51
RCL1-209ENST00000473230 AQRO60306 1485 aaKnown RBP eCLIP11.85□□□□□ -0.512e-8■■■□□ 17.3
RCL1-209ENST00000473230 FGD5Q6ZNL6 1462 aa11.85□□□□□ -0.51
RCL1-209ENST00000473230 SGIP1Q9BQI5 828 aa11.84□□□□□ -0.51
RCL1-209ENST00000473230 TARBP1Q13395 1621 aaKnown RBP11.84□□□□□ -0.51
RCL1-209ENST00000473230 RAD54L2Q9Y4B4 1467 aa11.83□□□□□ -0.52
RCL1-209ENST00000473230 CUX1P39880 1505 aa11.83□□□□□ -0.52
RCL1-209ENST00000473230 TRIM41Q8WV44 630 aa11.83□□□□□ -0.52
RCL1-209ENST00000473230 TDRD9Q8NDG6 1382 aaKnown RBP11.82□□□□□ -0.52
RCL1-209ENST00000473230 WDR97A6NE52 1622 aa11.82□□□□□ -0.52
RCL1-209ENST00000473230 ST18O60284 1047 aa11.79□□□□□ -0.52
RCL1-209ENST00000473230 PLCG2P16885 1265 aa11.79□□□□□ -0.52
RCL1-209ENST00000473230 IFNL1Q8IU54 200 aa11.79□□□□□ -0.52
RCL1-209ENST00000473230 TMEM106CQ9BVX2 250 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms