RNA–Protein interactions for RNA: ENST00000473230.1

RCL1-209, Transcript of RNA terminal phosphate cyclase like 1, humanhuman

TSL 3

Gene RCL1, Length 441 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RCL1-209ENST00000473230 AEBP2Q6ZN18 517 aaPredicted RBP25.39■■□□□ 1.66
RCL1-209ENST00000473230 CHIC1Q5VXU3 224 aa23.79■■□□□ 1.4
RCL1-209ENST00000473230 SENP3Q9H4L4 574 aaPredicted RBP21.76■■□□□ 1.07
RCL1-209ENST00000473230 PHF23Q9BUL5 403 aaPredicted RBP21.44■■□□□ 1.02
RCL1-209ENST00000473230 FOXD1Q16676 465 aa20.33■□□□□ 0.85
RCL1-209ENST00000473230 POTEDQ86YR6 584 aa19.46■□□□□ 0.71
RCL1-209ENST00000473230 MSH5O43196 834 aa19.2■□□□□ 0.66
RCL1-209ENST00000473230 PIAS4Q8N2W9 510 aaPredicted RBP18.95■□□□□ 0.62
RCL1-209ENST00000473230 PLPPR3Q6T4P5 718 aa18.79■□□□□ 0.6
RCL1-209ENST00000473230 PPP6R1Q9UPN7 881 aa18.68■□□□□ 0.58
RCL1-209ENST00000473230 ADRA2BP18089 450 aa18.63■□□□□ 0.57
RCL1-209ENST00000473230 MAPK8IP2Q13387 824 aaPredicted RBP17.25■□□□□ 0.35
RCL1-209ENST00000473230 DMRT2Q9Y5R5 561 aa17.16■□□□□ 0.34
RCL1-209ENST00000473230 SCAF1Q9H7N4 1312 aaKnown RBP17.07■□□□□ 0.32
RCL1-209ENST00000473230 CACNB1Q02641 598 aaPredicted RBP16.8■□□□□ 0.28
RCL1-209ENST00000473230 DCAF8L1A6NGE4 600 aa16.65■□□□□ 0.26
RCL1-209ENST00000473230 PPP4R3CPQ6ZMV5 832 aa16.42■□□□□ 0.22
RCL1-209ENST00000473230 NISCHQ9Y2I1 1504 aa16.4■□□□□ 0.22
RCL1-209ENST00000473230 HOXD11P31277 338 aaPredicted RBP16.34■□□□□ 0.21
RCL1-209ENST00000473230 RNF39Q9H2S5 420 aa16.31■□□□□ 0.2
RCL1-209ENST00000473230 CNKSR2Q8WXI2 1034 aa16.19■□□□□ 0.18
RCL1-209ENST00000473230 RNF216Q9NWF9 866 aaPredicted RBP16.14■□□□□ 0.17
RCL1-209ENST00000473230 C1QBPQ07021 282 aaKnown RBP16.07■□□□□ 0.16
RCL1-209ENST00000473230 DNAJC5BQ9UF47 199 aa15.81■□□□□ 0.12
RCL1-209ENST00000473230 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.69■□□□□ 0.12e-7■□□□□ 11.2
RCL1-209ENST00000473230 NCBP3Q53F19 620 aaKnown RBP15.68■□□□□ 0.1
RCL1-209ENST00000473230 NPM3O75607 178 aaKnown RBP15.42■□□□□ 0.06
RCL1-209ENST00000473230 CAPN15O75808 1086 aa15.23■□□□□ 0.03
RCL1-209ENST00000473230 U3KPZ7 1027 aaPredicted RBP15.23■□□□□ 0.03
RCL1-209ENST00000473230 POTEHQ6S545 545 aa15.19■□□□□ 0.02
RCL1-209ENST00000473230 SPINK5Q9NQ38 1064 aaPredicted RBP15.18■□□□□ 0.02
RCL1-209ENST00000473230 DSG3P32926 999 aa15.15■□□□□ 0.02
RCL1-209ENST00000473230 TRHP20396 242 aaPredicted RBP14.9□□□□□ -0.02
RCL1-209ENST00000473230 ABCB7O75027 752 aa14.84□□□□□ -0.03
RCL1-209ENST00000473230 SLC4A2P04920 1241 aa14.81□□□□□ -0.04
RCL1-209ENST00000473230 APLP2Q06481 763 aa14.81□□□□□ -0.04
RCL1-209ENST00000473230 ZNF219Q9P2Y4 722 aaPredicted RBP14.78□□□□□ -0.04
RCL1-209ENST00000473230 KCNA4P22459 653 aa14.76□□□□□ -0.05
RCL1-209ENST00000473230 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.69□□□□□ -0.06
RCL1-209ENST00000473230 HNRNPUL2Q1KMD3 747 aaKnown RBP14.69□□□□□ -0.06
RCL1-209ENST00000473230 CCDC180Q9P1Z9 1646 aa14.62□□□□□ -0.07
RCL1-209ENST00000473230 SAMD1Q6SPF0 538 aaPredicted RBP14.58□□□□□ -0.08
RCL1-209ENST00000473230 RBM42Q9BTD8 480 aaKnown RBP14.5□□□□□ -0.09
RCL1-209ENST00000473230 ABCC9O60706 1549 aa14.5□□□□□ -0.09
RCL1-209ENST00000473230 POLA2Q14181 598 aa14.36□□□□□ -0.11
RCL1-209ENST00000473230 CHRDL2Q6WN34 429 aa14.35□□□□□ -0.11
RCL1-209ENST00000473230 MYCNP04198 464 aaPredicted RBP14.28□□□□□ -0.12
RCL1-209ENST00000473230 AKT1S1Q96B36 256 aa14.05□□□□□ -0.16
RCL1-209ENST00000473230 SP7Q8TDD2 431 aaPredicted RBP14.03□□□□□ -0.16
RCL1-209ENST00000473230 ZBTB12Q9Y330 459 aaPredicted RBP14□□□□□ -0.17
RCL1-209ENST00000473230 ATF5Q9Y2D1 282 aaPredicted RBP13.98□□□□□ -0.17
RCL1-209ENST00000473230 REM2Q8IYK8 340 aaPredicted RBP13.94□□□□□ -0.18
RCL1-209ENST00000473230 OSCARQ8IYS5 282 aa13.9□□□□□ -0.18
RCL1-209ENST00000473230 PIP4P2Q8N4L2 257 aa13.9□□□□□ -0.18
RCL1-209ENST00000473230 FOXD4L1Q9NU39 408 aa13.9□□□□□ -0.18
RCL1-209ENST00000473230 RB1CC1Q8TDY2 1594 aa13.89□□□□□ -0.19
RCL1-209ENST00000473230 SLC4A1APQ9BWU0 796 aaKnown RBP13.87□□□□□ -0.19
RCL1-209ENST00000473230 DCAF8L2P0C7V8 631 aa13.86□□□□□ -0.19
RCL1-209ENST00000473230 HAX1O00165 279 aa13.85□□□□□ -0.19
RCL1-209ENST00000473230 NACADO15069 1562 aa13.84□□□□□ -0.19
RCL1-209ENST00000473230 PITPNM1O00562 1244 aa13.79□□□□□ -0.2
RCL1-209ENST00000473230 FXR2P51116 673 aaKnown RBP eCLIP13.72□□□□□ -0.21
RCL1-209ENST00000473230 MYO15BQ96JP2 1530 aa13.71□□□□□ -0.21
RCL1-209ENST00000473230 ZCCHC6Q5VYS8 1495 aaKnown RBP13.61□□□□□ -0.23
RCL1-209ENST00000473230 DCAF1Q9Y4B6 1507 aa13.58□□□□□ -0.24
RCL1-209ENST00000473230 EVX2Q03828 476 aa13.57□□□□□ -0.24
RCL1-209ENST00000473230 PABPN1Q86U42 306 aaKnown RBP eCLIP13.53□□□□□ -0.24
RCL1-209ENST00000473230 SPDYE2BA6NHP3 402 aa13.52□□□□□ -0.25
RCL1-209ENST00000473230 ZBTB22O15209 634 aa13.52□□□□□ -0.25
RCL1-209ENST00000473230 SPDYE6P0CI01 402 aa13.52□□□□□ -0.25
RCL1-209ENST00000473230 FBLN2P98095 1184 aa13.52□□□□□ -0.25
RCL1-209ENST00000473230 SPDYE2Q495Y8 402 aa13.52□□□□□ -0.25
RCL1-209ENST00000473230 CLEC11AQ9Y240 323 aa13.5□□□□□ -0.25
RCL1-209ENST00000473230 ATXN8OSP0DMR3 200 aa13.47□□□□□ -0.25
RCL1-209ENST00000473230 PRKAR2AP13861 404 aaKnown RBP13.47□□□□□ -0.25
RCL1-209ENST00000473230 SPDYE1Q8NFV5 336 aaPredicted RBP13.42□□□□□ -0.26
RCL1-209ENST00000473230 UNC13AQ9UPW8 1703 aa13.39□□□□□ -0.27
RCL1-209ENST00000473230 BICRAQ9NZM4 1560 aa13.37□□□□□ -0.27
RCL1-209ENST00000473230 SHROOM4Q9ULL8 1493 aa13.36□□□□□ -0.27
RCL1-209ENST00000473230 ZNF692Q9BU19 519 aaPredicted RBP13.35□□□□□ -0.27
RCL1-209ENST00000473230 SCRIBQ14160 1630 aa13.32□□□□□ -0.28
RCL1-209ENST00000473230 EHMT2Q96KQ7 1210 aa13.32□□□□□ -0.28
RCL1-209ENST00000473230 C19orf67A6NJJ6 358 aa13.3□□□□□ -0.28
RCL1-209ENST00000473230 MKRN4PQ13434 485 aaPredicted RBP13.29□□□□□ -0.28
RCL1-209ENST00000473230 GABBR2O75899 941 aa13.25□□□□□ -0.29
RCL1-209ENST00000473230 CHADLQ6NUI6 762 aa13.25□□□□□ -0.29
RCL1-209ENST00000473230 SSUH2Q9Y2M2 353 aa13.25□□□□□ -0.29
RCL1-209ENST00000473230 PRR29P0C7W0 189 aa13.18□□□□□ -0.3
RCL1-209ENST00000473230 LHX8Q68G74 356 aa13.18□□□□□ -0.3
RCL1-209ENST00000473230 CSRNP3Q8WYN3 585 aa13.14□□□□□ -0.31
RCL1-209ENST00000473230 EIF4G1Q04637 1599 aaKnown RBP13.11□□□□□ -0.31
RCL1-209ENST00000473230 CC2D2AQ9P2K1 1620 aa13.07□□□□□ -0.32
RCL1-209ENST00000473230 CECR2Q9BXF3 1484 aa13.07□□□□□ -0.32
RCL1-209ENST00000473230 CD44P16070 742 aaKnown RBP13.02□□□□□ -0.33
RCL1-209ENST00000473230 FARP1Q9Y4F1 1045 aaPredicted RBP12.96□□□□□ -0.33
RCL1-209ENST00000473230 POTEIP0CG38 1075 aa12.93□□□□□ -0.34
RCL1-209ENST00000473230 DCBLD2Q96PD2 775 aa12.87□□□□□ -0.35
RCL1-209ENST00000473230 CLCN6P51797 869 aa12.86□□□□□ -0.35
RCL1-209ENST00000473230 ZRANB1Q9UGI0 708 aa12.79□□□□□ -0.36
RCL1-209ENST00000473230 PLSCR2Q9NRY7 297 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms