RNA–Protein interactions for RNA: ENST00000472760.1

PRPF40A-208, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 243 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-208ENST00000472760 FXR2P51116 673 aaKnown RBP eCLIP11.99□□□□□ -0.49
PRPF40A-208ENST00000472760 CHRDL2Q6WN34 429 aa11.98□□□□□ -0.49
PRPF40A-208ENST00000472760 BBXQ8WY36 941 aaPredicted RBP11.98□□□□□ -0.49
PRPF40A-208ENST00000472760 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.98□□□□□ -0.49
PRPF40A-208ENST00000472760 CHGAP10645 457 aaKnown RBP11.95□□□□□ -0.5
PRPF40A-208ENST00000472760 TAOK2Q9UL54 1235 aa11.93□□□□□ -0.5
PRPF40A-208ENST00000472760 RIOK3O14730 519 aaKnown RBP11.92□□□□□ -0.5
PRPF40A-208ENST00000472760 CHRM1P11229 460 aaPredicted RBP11.92□□□□□ -0.5
PRPF40A-208ENST00000472760 RNF25Q96BH1 459 aaPredicted RBP11.92□□□□□ -0.5
PRPF40A-208ENST00000472760 TSPYL2Q9H2G4 693 aaPredicted RBP11.92□□□□□ -0.5
PRPF40A-208ENST00000472760 PYGBP11216 843 aa11.91□□□□□ -0.5
PRPF40A-208ENST00000472760 PIP4P2Q8N4L2 257 aa11.91□□□□□ -0.5
PRPF40A-208ENST00000472760 HAP1P54257 671 aaPredicted RBP11.89□□□□□ -0.51
PRPF40A-208ENST00000472760 PAXIP1Q6ZW49 1069 aaPredicted RBP11.86□□□□□ -0.51
PRPF40A-208ENST00000472760 HS6ST3Q8IZP7 471 aa11.85□□□□□ -0.51
PRPF40A-208ENST00000472760 CFAP44Q96MT7 982 aa11.85□□□□□ -0.51
PRPF40A-208ENST00000472760 VGFO15240 615 aaPredicted RBP11.84□□□□□ -0.51
PRPF40A-208ENST00000472760 PAK3O75914 559 aaPredicted RBP11.83□□□□□ -0.52
PRPF40A-208ENST00000472760 SPRYD3Q8NCJ5 442 aa11.82□□□□□ -0.52
PRPF40A-208ENST00000472760 STK25O00506 426 aa11.79□□□□□ -0.52
PRPF40A-208ENST00000472760 CCDC61Q9Y6R9 512 aa11.77□□□□□ -0.53
PRPF40A-208ENST00000472760 ZNF467Q7Z7K2 595 aaPredicted RBP11.76□□□□□ -0.53
PRPF40A-208ENST00000472760 SGIP1Q9BQI5 828 aa11.76□□□□□ -0.53
PRPF40A-208ENST00000472760 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.74□□□□□ -0.53
PRPF40A-208ENST00000472760 ZFP91Q96JP5 570 aaPredicted RBP11.74□□□□□ -0.53
PRPF40A-208ENST00000472760 DNAJC5Q9H3Z4 198 aa11.73□□□□□ -0.53
PRPF40A-208ENST00000472760 STK24Q9Y6E0 443 aa11.73□□□□□ -0.53
PRPF40A-208ENST00000472760 BCL11BQ9C0K0 894 aaPredicted RBP11.72□□□□□ -0.53
PRPF40A-208ENST00000472760 CD44P16070 742 aaKnown RBP11.69□□□□□ -0.54
PRPF40A-208ENST00000472760 VSIG10Q8N0Z9 540 aa11.69□□□□□ -0.54
PRPF40A-208ENST00000472760 ZRANB1Q9UGI0 708 aa11.69□□□□□ -0.54
PRPF40A-208ENST00000472760 PCDHB8Q9UN66 801 aa11.69□□□□□ -0.54
PRPF40A-208ENST00000472760 PCDHB13Q9Y5F0 798 aa11.69□□□□□ -0.54
PRPF40A-208ENST00000472760 PDAP1Q13442 181 aaKnown RBP11.67□□□□□ -0.54
PRPF40A-208ENST00000472760 NKX1-1Q15270 411 aaPredicted RBP11.67□□□□□ -0.54
PRPF40A-208ENST00000472760 ZNF579Q8NAF0 562 aaKnown RBP11.67□□□□□ -0.54
PRPF40A-208ENST00000472760 MAP3K13O43283 966 aa11.64□□□□□ -0.55
PRPF40A-208ENST00000472760 KIF12Q96FN5 646 aa11.64□□□□□ -0.55
PRPF40A-208ENST00000472760 TSHZ2Q9NRE2 1034 aa11.63□□□□□ -0.55
PRPF40A-208ENST00000472760 PSEN1P49768 467 aa11.62□□□□□ -0.55
PRPF40A-208ENST00000472760 IFNL1Q8IU54 200 aa11.61□□□□□ -0.55
PRPF40A-208ENST00000472760 GTPBP6O43824 516 aaPredicted RBP11.6□□□□□ -0.55
PRPF40A-208ENST00000472760 RYDENQ9NUL5 291 aaKnown RBP11.59□□□□□ -0.55
PRPF40A-208ENST00000472760 PHF12Q96QT6 1004 aa11.58□□□□□ -0.56
PRPF40A-208ENST00000472760 C19orf67A6NJJ6 358 aa11.57□□□□□ -0.56
PRPF40A-208ENST00000472760 KDM2AQ9Y2K7 1162 aa11.56□□□□□ -0.56
PRPF40A-208ENST00000472760 CABP2Q9NPB3 220 aa11.48□□□□□ -0.57
PRPF40A-208ENST00000472760 HAX1O00165 279 aa11.47□□□□□ -0.57
PRPF40A-208ENST00000472760 EFCAB3Q8N7B9 438 aa11.45□□□□□ -0.58
PRPF40A-208ENST00000472760 MS4A3Q96HJ5 214 aa11.45□□□□□ -0.58
PRPF40A-208ENST00000472760 SOX12O15370 315 aa11.42□□□□□ -0.58
PRPF40A-208ENST00000472760 BCANQ96GW7 911 aa11.42□□□□□ -0.58
PRPF40A-208ENST00000472760 TMEM106CQ9BVX2 250 aa11.42□□□□□ -0.58
PRPF40A-208ENST00000472760 MFRPQ9BY79 579 aa11.42□□□□□ -0.58
PRPF40A-208ENST00000472760 GOLGA2Q08379 1002 aa11.41□□□□□ -0.58
PRPF40A-208ENST00000472760 NLRP6P59044 892 aa11.4□□□□□ -0.58
PRPF40A-208ENST00000472760 TRPC6Q9Y210 931 aa11.39□□□□□ -0.59
PRPF40A-208ENST00000472760 PHF8Q9UPP1 1060 aa11.37□□□□□ -0.59
PRPF40A-208ENST00000472760 SP7Q8TDD2 431 aaPredicted RBP11.36□□□□□ -0.59
PRPF40A-208ENST00000472760 TIE1P35590 1138 aa11.35□□□□□ -0.59
PRPF40A-208ENST00000472760 CLCN6P51797 869 aa11.35□□□□□ -0.59
PRPF40A-208ENST00000472760 EVX2Q03828 476 aa11.34□□□□□ -0.59
PRPF40A-208ENST00000472760 MKRN3Q13064 507 aaKnown RBP11.34□□□□□ -0.59
PRPF40A-208ENST00000472760 FBXO22Q8NEZ5 403 aa11.34□□□□□ -0.59
PRPF40A-208ENST00000472760 GALR2O43603 387 aaPredicted RBP11.33□□□□□ -0.6
PRPF40A-208ENST00000472760 TTLL13PA6NNM8 815 aa11.31□□□□□ -0.6
PRPF40A-208ENST00000472760 PPP1R37O75864 691 aa11.3□□□□□ -0.6
PRPF40A-208ENST00000472760 BMP2KQ9NSY1 1161 aaPredicted RBP11.3□□□□□ -0.6
PRPF40A-208ENST00000472760 CADPS2Q86UW7 1296 aa11.27□□□□□ -0.61
PRPF40A-208ENST00000472760 WDR70Q9NW82 654 aa11.26□□□□□ -0.61
PRPF40A-208ENST00000472760 TRIM35Q9UPQ4 493 aa11.25□□□□□ -0.61
PRPF40A-208ENST00000472760 MS4A4AQ96JQ5 239 aa11.24□□□□□ -0.61
PRPF40A-208ENST00000472760 NBR1Q14596 966 aa11.23□□□□□ -0.61
PRPF40A-208ENST00000472760 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.22□□□□□ -0.615e-9■■□□□ 13.7
PRPF40A-208ENST00000472760 ATN1P54259 1190 aaPredicted RBP11.18□□□□□ -0.62
PRPF40A-208ENST00000472760 GABBR2O75899 941 aa11.17□□□□□ -0.62
PRPF40A-208ENST00000472760 ATMINO43313 823 aaPredicted RBP11.16□□□□□ -0.62
PRPF40A-208ENST00000472760 P3H3Q8IVL6 736 aa11.16□□□□□ -0.62
PRPF40A-208ENST00000472760 ASTLQ6HA08 431 aaPredicted RBP11.14□□□□□ -0.63
PRPF40A-208ENST00000472760 ILDR1Q86SU0 546 aaPredicted RBP11.14□□□□□ -0.63
PRPF40A-208ENST00000472760 PDE4AP27815 886 aa11.13□□□□□ -0.63
PRPF40A-208ENST00000472760 DCBLD2Q96PD2 775 aa11.12□□□□□ -0.63
PRPF40A-208ENST00000472760 IER5LQ5T953 404 aa11.1□□□□□ -0.63
PRPF40A-208ENST00000472760 LARP6Q9BRS8 491 aaKnown RBP11.1□□□□□ -0.63
PRPF40A-208ENST00000472760 DPY19L2Q6NUT2 758 aa11.09□□□□□ -0.63
PRPF40A-208ENST00000472760 OCEL1Q9H607 264 aa11.09□□□□□ -0.63
PRPF40A-208ENST00000472760 NCKAP5LQ9HCH0 1330 aa11.09□□□□□ -0.63
PRPF40A-208ENST00000472760 KCNV2Q8TDN2 545 aa11.08□□□□□ -0.64
PRPF40A-208ENST00000472760 IRX5P78411 483 aaPredicted RBP11.07□□□□□ -0.64
PRPF40A-208ENST00000472760 E2F4Q16254 413 aa11.07□□□□□ -0.64
PRPF40A-208ENST00000472760 PLCG2P16885 1265 aa11.06□□□□□ -0.64
PRPF40A-208ENST00000472760 PDCD7Q8N8D1 485 aaKnown RBP11.06□□□□□ -0.64
PRPF40A-208ENST00000472760 G3V3G9 751 aa11.05□□□□□ -0.64
PRPF40A-208ENST00000472760 CRISPLD2Q9H0B8 497 aa11.05□□□□□ -0.64
PRPF40A-208ENST00000472760 DDX27Q96GQ7 796 aaKnown RBP11.04□□□□□ -0.64
PRPF40A-208ENST00000472760 PRKCSHP14314 528 aaPredicted RBP11.03□□□□□ -0.64
PRPF40A-208ENST00000472760 TPRNQ4KMQ1 711 aa11.03□□□□□ -0.64
PRPF40A-208ENST00000472760 MICALL2Q8IY33 904 aa11.03□□□□□ -0.64
PRPF40A-208ENST00000472760 SEC24BO95487 1268 aa11.02□□□□□ -0.65
PRPF40A-208ENST00000472760 MFSD10Q14728 455 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms